RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 KIF15Q9NS87 1388 aa20.57■□□□□ 0.88
CLK3-218ENST00000566926 UHRF1BP1Q6BDS2 1440 aa20.56■□□□□ 0.88
CLK3-218ENST00000566926 RNF17Q9BXT8 1623 aaKnown RBP20.56■□□□□ 0.88
CLK3-218ENST00000566926 NPATQ14207 1427 aa20.55■□□□□ 0.88
CLK3-218ENST00000566926 KDM5DQ9BY66 1539 aa20.55■□□□□ 0.88
CLK3-218ENST00000566926 WASHC2CQ9Y4E1 1318 aa20.54■□□□□ 0.88
CLK3-218ENST00000566926 PPARGC1BQ86YN6 1023 aaKnown RBP20.54■□□□□ 0.88
CLK3-218ENST00000566926 RRP7BPQ9NSQ0 103 aa20.54■□□□□ 0.88
CLK3-218ENST00000566926 ERBINQ96RT1 1412 aa20.53■□□□□ 0.88
CLK3-218ENST00000566926 CHIC2Q9UKJ5 165 aa20.53■□□□□ 0.88
CLK3-218ENST00000566926 ZC3H13Q5T200 1668 aaKnown RBP20.52■□□□□ 0.88
CLK3-218ENST00000566926 ADGRL2O95490 1459 aa20.51■□□□□ 0.87
CLK3-218ENST00000566926 NCOA1Q15788 1441 aa20.51■□□□□ 0.87
CLK3-218ENST00000566926 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.5■□□□□ 0.87
CLK3-218ENST00000566926 PTPRKQ15262 1439 aa20.48■□□□□ 0.87
CLK3-218ENST00000566926 HSPA2P54652 639 aa20.48■□□□□ 0.87
CLK3-218ENST00000566926 PZPP20742 1482 aa20.45■□□□□ 0.86
CLK3-218ENST00000566926 MROH1Q8NDA8 1641 aa20.45■□□□□ 0.86
CLK3-218ENST00000566926 CEP152O94986 1710 aa20.44■□□□□ 0.86
CLK3-218ENST00000566926 ABCC3O15438 1527 aa20.44■□□□□ 0.86
CLK3-218ENST00000566926 CFAP65Q6ZU64 1925 aaKnown RBP20.44■□□□□ 0.86
CLK3-218ENST00000566926 DEPDC5O75140 1603 aa20.44■□□□□ 0.86
CLK3-218ENST00000566926 KANK1Q14678 1352 aa20.44■□□□□ 0.86
CLK3-218ENST00000566926 PRDM15P57071 1507 aaPredicted RBP20.43■□□□□ 0.86
CLK3-218ENST00000566926 MYO3AQ8NEV4 1616 aa20.43■□□□□ 0.86
CLK3-218ENST00000566926 ZNF142P52746 1687 aaPredicted RBP20.42■□□□□ 0.86
CLK3-218ENST00000566926 ROCK1Q13464 1354 aa20.42■□□□□ 0.86
CLK3-218ENST00000566926 RRBP1Q9P2E9 1410 aaKnown RBP20.41■□□□□ 0.86
CLK3-218ENST00000566926 CAMSAP1Q5T5Y3 1602 aa20.41■□□□□ 0.86
CLK3-218ENST00000566926 ANKRD50Q9ULJ7 1429 aa20.4■□□□□ 0.86
CLK3-218ENST00000566926 TNRQ92752 1358 aa20.39■□□□□ 0.85
CLK3-218ENST00000566926 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.39■□□□□ 0.85
CLK3-218ENST00000566926 DMRT2Q9Y5R5 561 aa20.39■□□□□ 0.85
CLK3-218ENST00000566926 ITGAEP38570 1179 aa20.38■□□□□ 0.85
CLK3-218ENST00000566926 STRCQ7RTU9 1775 aa20.38■□□□□ 0.85
CLK3-218ENST00000566926 CEP170BQ9Y4F5 1589 aaPredicted RBP20.38■□□□□ 0.85
CLK3-218ENST00000566926 FBXO31Q5XUX0 539 aaPredicted RBP20.37■□□□□ 0.85
CLK3-218ENST00000566926 A2ML1A8K2U0 1454 aa20.36■□□□□ 0.85
CLK3-218ENST00000566926 ARHGAP31Q2M1Z3 1444 aa20.35■□□□□ 0.85
CLK3-218ENST00000566926 NLRP1Q9C000 1473 aa20.34■□□□□ 0.85
CLK3-218ENST00000566926 SPATA31D1Q6ZQQ2 1576 aa20.34■□□□□ 0.85
CLK3-218ENST00000566926 VWDEQ8N2E2 1590 aa20.34■□□□□ 0.85
CLK3-218ENST00000566926 LMTK2Q8IWU2 1503 aa20.33■□□□□ 0.85
CLK3-218ENST00000566926 ERVK-7P63135 1459 aa20.31■□□□□ 0.84
CLK3-218ENST00000566926 PLA2R1Q13018 1463 aa20.3■□□□□ 0.84
CLK3-218ENST00000566926 UNC13BO14795 1591 aa20.29■□□□□ 0.84
CLK3-218ENST00000566926 PTPRTO14522 1441 aa20.27■□□□□ 0.84
CLK3-218ENST00000566926 PKD2Q13563 968 aa20.27■□□□□ 0.84
CLK3-218ENST00000566926 THEMISQ8N1K5 641 aaPredicted RBP20.27■□□□□ 0.84
CLK3-218ENST00000566926 UGGT1Q9NYU2 1555 aa20.26■□□□□ 0.83
CLK3-218ENST00000566926 EFCAB6Q5THR3 1501 aa20.26■□□□□ 0.83
CLK3-218ENST00000566926 TET3O43151 1660 aa20.26■□□□□ 0.83
CLK3-218ENST00000566926 GCC2Q8IWJ2 1684 aa20.26■□□□□ 0.83
CLK3-218ENST00000566926 POLR1AO95602 1720 aaPredicted RBP20.24■□□□□ 0.83
CLK3-218ENST00000566926 RPRD2Q5VT52 1461 aaKnown RBP20.23■□□□□ 0.83
CLK3-218ENST00000566926 IQGAP3Q86VI3 1631 aa20.22■□□□□ 0.83
CLK3-218ENST00000566926 NCKAP5LQ9HCH0 1330 aa20.21■□□□□ 0.83
CLK3-218ENST00000566926 UBR1Q8IWV7 1749 aa20.19■□□□□ 0.82
CLK3-218ENST00000566926 ANKLE2Q86XL3 938 aa20.19■□□□□ 0.82
CLK3-218ENST00000566926 NUP155O75694 1391 aa20.19■□□□□ 0.82
CLK3-218ENST00000566926 TRIM26Q12899 539 aaPredicted RBP20.18■□□□□ 0.82
CLK3-218ENST00000566926 KDM5AP29375 1690 aaKnown RBP20.18■□□□□ 0.82
CLK3-218ENST00000566926 NAIPQ13075 1403 aa20.18■□□□□ 0.82
CLK3-218ENST00000566926 NOS1P29475 1434 aa20.17■□□□□ 0.82
CLK3-218ENST00000566926 SLC52A1Q9NWF4 448 aa20.16■□□□□ 0.82
CLK3-218ENST00000566926 STAG3Q9UJ98 1225 aa20.16■□□□□ 0.82
CLK3-218ENST00000566926 HFM1A2PYH4 1435 aa20.16■□□□□ 0.82
CLK3-218ENST00000566926 E9PCH4 1651 aa20.16■□□□□ 0.82
CLK3-218ENST00000566926 PIK3C2BO00750 1634 aa20.15■□□□□ 0.82
CLK3-218ENST00000566926 SYNMO15061 1565 aa20.14■□□□□ 0.81
CLK3-218ENST00000566926 IDI1Q13907 227 aa20.12■□□□□ 0.81
CLK3-218ENST00000566926 CERKQ8TCT0 537 aa20.11■□□□□ 0.81
CLK3-218ENST00000566926 NEURL4Q96JN8 1562 aa20.11■□□□□ 0.81
CLK3-218ENST00000566926 MED14O60244 1454 aa20.1■□□□□ 0.81
CLK3-218ENST00000566926 SLIT1O75093 1534 aa20.09■□□□□ 0.81
CLK3-218ENST00000566926 EID1Q9Y6B2 187 aa20.09■□□□□ 0.81
CLK3-218ENST00000566926 IQGAP1P46940 1657 aa20.08■□□□□ 0.81
CLK3-218ENST00000566926 NPHP4O75161 1426 aaPredicted RBP20.08■□□□□ 0.8
CLK3-218ENST00000566926 ADGRB3O60242 1522 aa20.07■□□□□ 0.8
CLK3-218ENST00000566926 ACIN1Q9UKV3 1341 aaKnown RBP20.07■□□□□ 0.8
CLK3-218ENST00000566926 ARHGAP23Q9P227 1491 aa20.07■□□□□ 0.8
CLK3-218ENST00000566926 FBXO41Q8TF61 875 aa20.07■□□□□ 0.8
CLK3-218ENST00000566926 TRIM52Q96A61 297 aa20.07■□□□□ 0.8
CLK3-218ENST00000566926 SCAF11Q99590 1463 aaKnown RBP20.06■□□□□ 0.8
CLK3-218ENST00000566926 SPHKAPQ2M3C7 1700 aa20.06■□□□□ 0.8
CLK3-218ENST00000566926 MYO5BQ9ULV0 1848 aa20.06■□□□□ 0.8
CLK3-218ENST00000566926 TXNDC2Q86VQ3 553 aa20.05■□□□□ 0.8
CLK3-218ENST00000566926 TMEM2Q9UHN6 1383 aa20.05■□□□□ 0.8
CLK3-218ENST00000566926 LTBP4Q8N2S1 1624 aa20.05■□□□□ 0.8
CLK3-218ENST00000566926 ILDR1Q86SU0 546 aaPredicted RBP20.04■□□□□ 0.8
CLK3-218ENST00000566926 HDGFP51858 240 aaKnown RBP20.03■□□□□ 0.8
CLK3-218ENST00000566926 ZNF335Q9H4Z2 1342 aaPredicted RBP20.02■□□□□ 0.79
CLK3-218ENST00000566926 IQSEC2Q5JU85 1478 aa20.01■□□□□ 0.79
CLK3-218ENST00000566926 TMEM131LA2VDJ0 1609 aa20.01■□□□□ 0.79
CLK3-218ENST00000566926 LTKP29376 864 aa20■□□□□ 0.79
CLK3-218ENST00000566926 CHGAP10645 457 aaKnown RBP19.99■□□□□ 0.79
CLK3-218ENST00000566926 SLC4A1APQ9BWU0 796 aaKnown RBP19.99■□□□□ 0.79
CLK3-218ENST00000566926 CPS1P31327 1500 aa19.97■□□□□ 0.79
CLK3-218ENST00000566926 SETD5Q9C0A6 1442 aa19.96■□□□□ 0.79
CLK3-218ENST00000566926 PCGF6Q9BYE7 350 aa19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms