RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 ALKQ9UM73 1620 aa27.63■■■□□ 2.01
CDH3-205ENST00000566808 PZPP20742 1482 aa27.62■■■□□ 2.01
CDH3-205ENST00000566808 KDM5DQ9BY66 1539 aa27.62■■■□□ 2.01
CDH3-205ENST00000566808 CCNB3Q8WWL7 1395 aa27.61■■■□□ 2.01
CDH3-205ENST00000566808 TNRQ92752 1358 aa27.61■■■□□ 2.01
CDH3-205ENST00000566808 DEPDC5O75140 1603 aa27.61■■■□□ 2.01
CDH3-205ENST00000566808 PHF23Q9BUL5 403 aaPredicted RBP27.6■■■□□ 2.01
CDH3-205ENST00000566808 TIAM1Q13009 1591 aa27.56■■■□□ 2
CDH3-205ENST00000566808 RTEL1-TNFRSF6BF6WH68 1400 aa27.56■■■□□ 2
CDH3-205ENST00000566808 RNF17Q9BXT8 1623 aaKnown RBP27.56■■■□□ 2
CDH3-205ENST00000566808 MED14O60244 1454 aa27.55■■■□□ 2
CDH3-205ENST00000566808 SYNMO15061 1565 aa27.55■■■□□ 2
CDH3-205ENST00000566808 IQGAP1P46940 1657 aa27.55■■■□□ 2
CDH3-205ENST00000566808 NLRP1Q9C000 1473 aa27.54■■■□□ 2
CDH3-205ENST00000566808 MBD5Q9P267 1494 aa27.54■■■□□ 2
CDH3-205ENST00000566808 DHX29Q7Z478 1369 aaKnown RBP27.52■■■□□ 2
CDH3-205ENST00000566808 UGGT1Q9NYU2 1555 aa27.52■■■□□ 2
CDH3-205ENST00000566808 NPHP4O75161 1426 aaPredicted RBP27.51■■□□□ 1.99
CDH3-205ENST00000566808 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.5■■□□□ 1.99
CDH3-205ENST00000566808 ANKLE2Q86XL3 938 aa27.5■■□□□ 1.99
CDH3-205ENST00000566808 MTUS2Q5JR59 1369 aa27.49■■□□□ 1.99
CDH3-205ENST00000566808 STRCP1A6NGW2 1772 aa27.48■■□□□ 1.99
CDH3-205ENST00000566808 EHBP1L1Q8N3D4 1523 aa27.47■■□□□ 1.99
CDH3-205ENST00000566808 FBXO31Q5XUX0 539 aaPredicted RBP27.47■■□□□ 1.99
CDH3-205ENST00000566808 THEMISQ8N1K5 641 aaPredicted RBP27.46■■□□□ 1.99
CDH3-205ENST00000566808 MIA2Q96PC5 1412 aa27.45■■□□□ 1.98
CDH3-205ENST00000566808 CCDC141Q6ZP82 1450 aa27.44■■□□□ 1.98
CDH3-205ENST00000566808 ZNF644Q9H582 1327 aaPredicted RBP27.43■■□□□ 1.98
CDH3-205ENST00000566808 LRRC7Q96NW7 1537 aa27.43■■□□□ 1.98
CDH3-205ENST00000566808 KIF3BO15066 747 aa27.41■■□□□ 1.98
CDH3-205ENST00000566808 ZC3H13Q5T200 1668 aaKnown RBP27.4■■□□□ 1.98
CDH3-205ENST00000566808 WASHC2CQ9Y4E1 1318 aa27.39■■□□□ 1.97
CDH3-205ENST00000566808 CEP162Q5TB80 1403 aa27.37■■□□□ 1.97
CDH3-205ENST00000566808 CAMSAP2Q08AD1 1489 aa27.35■■□□□ 1.97
CDH3-205ENST00000566808 CHIC1Q5VXU3 224 aa27.31■■□□□ 1.96
CDH3-205ENST00000566808 ABCC3O15438 1527 aa27.31■■□□□ 1.96
CDH3-205ENST00000566808 ARHGEF5Q12774 1597 aa27.31■■□□□ 1.96
CDH3-205ENST00000566808 UBR1Q8IWV7 1749 aa27.3■■□□□ 1.96
CDH3-205ENST00000566808 SENP3Q9H4L4 574 aaPredicted RBP27.29■■□□□ 1.96
CDH3-205ENST00000566808 XIRP1Q702N8 1843 aaKnown RBP27.28■■□□□ 1.96
CDH3-205ENST00000566808 ERVK-7P63135 1459 aa27.28■■□□□ 1.96
CDH3-205ENST00000566808 EIF2AK4Q9P2K8 1649 aaKnown RBP27.27■■□□□ 1.96
CDH3-205ENST00000566808 SCAF11Q99590 1463 aaKnown RBP27.25■■□□□ 1.95
CDH3-205ENST00000566808 RSPH4AQ5TD94 716 aa27.25■■□□□ 1.95
CDH3-205ENST00000566808 RGS17Q9UGC6 210 aaPredicted RBP27.24■■□□□ 1.95
CDH3-205ENST00000566808 NCOA2Q15596 1464 aa27.22■■□□□ 1.95
CDH3-205ENST00000566808 CEP152O94986 1710 aa27.21■■□□□ 1.95
CDH3-205ENST00000566808 MROH1Q8NDA8 1641 aa27.2■■□□□ 1.95
CDH3-205ENST00000566808 MAST1Q9Y2H9 1570 aa27.19■■□□□ 1.94
CDH3-205ENST00000566808 SLIT1O75093 1534 aa27.19■■□□□ 1.94
CDH3-205ENST00000566808 ARHGAP23Q9P227 1491 aa27.18■■□□□ 1.94
CDH3-205ENST00000566808 CFAP65Q6ZU64 1925 aaKnown RBP27.16■■□□□ 1.94
CDH3-205ENST00000566808 FAM135BQ49AJ0 1406 aa27.14■■□□□ 1.93
CDH3-205ENST00000566808 TSPY4P0CV99 314 aa27.12■■□□□ 1.93
CDH3-205ENST00000566808 TSPY10P0CW01 314 aa27.12■■□□□ 1.93
CDH3-205ENST00000566808 ROBO1Q9Y6N7 1651 aa27.1■■□□□ 1.93
CDH3-205ENST00000566808 SETD1AO15047 1707 aaKnown RBP27.08■■□□□ 1.93
CDH3-205ENST00000566808 PRDM15P57071 1507 aaPredicted RBP27.06■■□□□ 1.92
CDH3-205ENST00000566808 POTEAQ6S8J7 498 aa27.06■■□□□ 1.92
CDH3-205ENST00000566808 LRRC9Q6ZRR7 1453 aa27.06■■□□□ 1.92
CDH3-205ENST00000566808 KDM5AP29375 1690 aaKnown RBP27.05■■□□□ 1.92
CDH3-205ENST00000566808 LTKP29376 864 aa27.05■■□□□ 1.92
CDH3-205ENST00000566808 PIK3C2BO00750 1634 aa27.05■■□□□ 1.92
CDH3-205ENST00000566808 MAP3K1Q13233 1512 aa27.04■■□□□ 1.92
CDH3-205ENST00000566808 ARHGAP31Q2M1Z3 1444 aa27.03■■□□□ 1.92
CDH3-205ENST00000566808 TXNDC2Q86VQ3 553 aa27.03■■□□□ 1.92
CDH3-205ENST00000566808 DUOX2Q9NRD8 1548 aa27.01■■□□□ 1.91
CDH3-205ENST00000566808 EID1Q9Y6B2 187 aa27.01■■□□□ 1.91
CDH3-205ENST00000566808 TMEM94Q12767 1356 aa27■■□□□ 1.91
CDH3-205ENST00000566808 TMEM2Q9UHN6 1383 aa26.97■■□□□ 1.91
CDH3-205ENST00000566808 NWD1Q149M9 1564 aa26.97■■□□□ 1.91
CDH3-205ENST00000566808 NKTRP30414 1462 aaKnown RBP26.96■■□□□ 1.91
CDH3-205ENST00000566808 PHLPP1O60346 1717 aa26.96■■□□□ 1.91
CDH3-205ENST00000566808 EFCAB6Q5THR3 1501 aa26.95■■□□□ 1.91
CDH3-205ENST00000566808 CROCC2H7BZ55 1655 aa26.92■■□□□ 1.9
CDH3-205ENST00000566808 TET3O43151 1660 aa26.92■■□□□ 1.9
CDH3-205ENST00000566808 ERBINQ96RT1 1412 aa26.91■■□□□ 1.9
CDH3-205ENST00000566808 KCNA6P17658 529 aa26.89■■□□□ 1.9
CDH3-205ENST00000566808 MYOM3Q5VTT5 1437 aa26.87■■□□□ 1.89
CDH3-205ENST00000566808 KIF15Q9NS87 1388 aa26.86■■□□□ 1.89
CDH3-205ENST00000566808 JCADQ9P266 1359 aa26.86■■□□□ 1.89
CDH3-205ENST00000566808 COL16A1Q07092 1604 aaPredicted RBP26.85■■□□□ 1.89
CDH3-205ENST00000566808 ADGRB3O60242 1522 aa26.85■■□□□ 1.89
CDH3-205ENST00000566808 MSH6P52701 1360 aa26.84■■□□□ 1.89
CDH3-205ENST00000566808 PROSER2Q86WR7 435 aaPredicted RBP26.84■■□□□ 1.89
CDH3-205ENST00000566808 STAG3Q9UJ98 1225 aa26.84■■□□□ 1.89
CDH3-205ENST00000566808 LMTK2Q8IWU2 1503 aa26.82■■□□□ 1.88
CDH3-205ENST00000566808 KANK1Q14678 1352 aa26.8■■□□□ 1.88
CDH3-205ENST00000566808 SLC26A8Q96RN1 970 aa26.78■■□□□ 1.88
CDH3-205ENST00000566808 CHD2O14647 1828 aaKnown RBP26.77■■□□□ 1.88
CDH3-205ENST00000566808 RBM33Q96EV2 1170 aaKnown RBP26.77■■□□□ 1.88
CDH3-205ENST00000566808 LRP6O75581 1613 aa26.76■■□□□ 1.87
CDH3-205ENST00000566808 FGD6Q6ZV73 1430 aa26.76■■□□□ 1.87
CDH3-205ENST00000566808 SLAIN2Q9P270 581 aa26.75■■□□□ 1.87
CDH3-205ENST00000566808 SHPRHQ149N8 1683 aa26.75■■□□□ 1.87
CDH3-205ENST00000566808 VPS8Q8N3P4 1428 aa26.74■■□□□ 1.87
CDH3-205ENST00000566808 IDI1Q13907 227 aa26.73■■□□□ 1.87
CDH3-205ENST00000566808 NOS1P29475 1434 aa26.73■■□□□ 1.87
CDH3-205ENST00000566808 SPATA31A6Q5VVP1 1343 aa26.72■■□□□ 1.87
CDH3-205ENST00000566808 AHDC1Q5TGY3 1603 aaPredicted RBP26.72■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms