RNA–Protein interactions for RNA: ENST00000566121.1

CMTM3-212, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 3 BASIC

Gene CMTM3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-212ENST00000566121 PKD2Q13563 968 aa23.82■■□□□ 1.4
CMTM3-212ENST00000566121 KDM5DQ9BY66 1539 aa23.81■■□□□ 1.4
CMTM3-212ENST00000566121 WASHC2CQ9Y4E1 1318 aa23.81■■□□□ 1.4
CMTM3-212ENST00000566121 ZNF142P52746 1687 aaPredicted RBP23.8■■□□□ 1.4
CMTM3-212ENST00000566121 PZPP20742 1482 aa23.8■■□□□ 1.4
CMTM3-212ENST00000566121 SHANK2Q9UPX8 1470 aa23.78■■□□□ 1.4
CMTM3-212ENST00000566121 CAMSAP1Q5T5Y3 1602 aa23.77■■□□□ 1.4
CMTM3-212ENST00000566121 A2ML1A8K2U0 1454 aa23.77■■□□□ 1.4
CMTM3-212ENST00000566121 TCOF1Q13428 1488 aaKnown RBP23.77■■□□□ 1.4
CMTM3-212ENST00000566121 CEP170BQ9Y4F5 1589 aaPredicted RBP23.76■■□□□ 1.39
CMTM3-212ENST00000566121 RNF17Q9BXT8 1623 aaKnown RBP23.76■■□□□ 1.39
CMTM3-212ENST00000566121 EIF2AK4Q9P2K8 1649 aaKnown RBP23.76■■□□□ 1.39
CMTM3-212ENST00000566121 MYO3AQ8NEV4 1616 aa23.75■■□□□ 1.39
CMTM3-212ENST00000566121 TNRQ92752 1358 aa23.74■■□□□ 1.39
CMTM3-212ENST00000566121 IQSEC2Q5JU85 1478 aa23.74■■□□□ 1.39
CMTM3-212ENST00000566121 DUOX2Q9NRD8 1548 aa23.74■■□□□ 1.39
CMTM3-212ENST00000566121 ABCC5O15440 1437 aa23.73■■□□□ 1.39
CMTM3-212ENST00000566121 FGD6Q6ZV73 1430 aa23.72■■□□□ 1.39
CMTM3-212ENST00000566121 LTBP4Q8N2S1 1624 aa23.7■■□□□ 1.39
CMTM3-212ENST00000566121 NLRP1Q9C000 1473 aa23.7■■□□□ 1.38
CMTM3-212ENST00000566121 FBXO31Q5XUX0 539 aaPredicted RBP23.7■■□□□ 1.38
CMTM3-212ENST00000566121 PTPN23Q9H3S7 1636 aa23.69■■□□□ 1.38
CMTM3-212ENST00000566121 ERBINQ96RT1 1412 aa23.68■■□□□ 1.38
CMTM3-212ENST00000566121 NCKAP5LQ9HCH0 1330 aa23.68■■□□□ 1.38
CMTM3-212ENST00000566121 ZC3H13Q5T200 1668 aaKnown RBP23.68■■□□□ 1.38
CMTM3-212ENST00000566121 DNMT1P26358 1616 aaKnown RBP23.68■■□□□ 1.38
CMTM3-212ENST00000566121 THEMISQ8N1K5 641 aaPredicted RBP23.67■■□□□ 1.38
CMTM3-212ENST00000566121 ABCC3O15438 1527 aa23.67■■□□□ 1.38
CMTM3-212ENST00000566121 KIF15Q9NS87 1388 aa23.66■■□□□ 1.38
CMTM3-212ENST00000566121 DAPK1P53355 1430 aa23.66■■□□□ 1.38
CMTM3-212ENST00000566121 ARHGAP31Q2M1Z3 1444 aa23.66■■□□□ 1.38
CMTM3-212ENST00000566121 MROH1Q8NDA8 1641 aa23.63■■□□□ 1.37
CMTM3-212ENST00000566121 SPATA31D1Q6ZQQ2 1576 aa23.62■■□□□ 1.37
CMTM3-212ENST00000566121 CROCC2H7BZ55 1655 aa23.61■■□□□ 1.37
CMTM3-212ENST00000566121 ANKRD30AQ9BXX3 1397 aa23.61■■□□□ 1.37
CMTM3-212ENST00000566121 PRDM15P57071 1507 aaPredicted RBP23.59■■□□□ 1.37
CMTM3-212ENST00000566121 ANKLE2Q86XL3 938 aa23.59■■□□□ 1.37
CMTM3-212ENST00000566121 MED14O60244 1454 aa23.58■■□□□ 1.37
CMTM3-212ENST00000566121 RRP7BPQ9NSQ0 103 aa23.58■■□□□ 1.37
CMTM3-212ENST00000566121 ADGRL2O95490 1459 aa23.57■■□□□ 1.36
CMTM3-212ENST00000566121 ERVK-7P63135 1459 aa23.57■■□□□ 1.36
CMTM3-212ENST00000566121 UGGT1Q9NYU2 1555 aa23.56■■□□□ 1.36
CMTM3-212ENST00000566121 DEPDC5O75140 1603 aa23.55■■□□□ 1.36
CMTM3-212ENST00000566121 LMTK2Q8IWU2 1503 aa23.54■■□□□ 1.36
CMTM3-212ENST00000566121 ZNF335Q9H4Z2 1342 aaPredicted RBP23.53■■□□□ 1.36
CMTM3-212ENST00000566121 KANK1Q14678 1352 aa23.52■■□□□ 1.36
CMTM3-212ENST00000566121 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.52■■□□□ 1.36
CMTM3-212ENST00000566121 VWDEQ8N2E2 1590 aa23.51■■□□□ 1.35
CMTM3-212ENST00000566121 NEURL4Q96JN8 1562 aa23.51■■□□□ 1.35
CMTM3-212ENST00000566121 POLR1AO95602 1720 aaPredicted RBP23.49■■□□□ 1.35
CMTM3-212ENST00000566121 CPS1P31327 1500 aa23.46■■□□□ 1.35
CMTM3-212ENST00000566121 CHIC2Q9UKJ5 165 aa23.46■■□□□ 1.35
CMTM3-212ENST00000566121 NPHP4O75161 1426 aaPredicted RBP23.45■■□□□ 1.34
CMTM3-212ENST00000566121 CEP152O94986 1710 aa23.45■■□□□ 1.34
CMTM3-212ENST00000566121 ARHGAP23Q9P227 1491 aa23.43■■□□□ 1.34
CMTM3-212ENST00000566121 SLIT1O75093 1534 aa23.43■■□□□ 1.34
CMTM3-212ENST00000566121 ANKRD50Q9ULJ7 1429 aa23.42■■□□□ 1.34
CMTM3-212ENST00000566121 ROCK1Q13464 1354 aa23.42■■□□□ 1.34
CMTM3-212ENST00000566121 FAM50AQ14320 339 aaKnown RBP23.42■■□□□ 1.34
CMTM3-212ENST00000566121 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.41■■□□□ 1.34
CMTM3-212ENST00000566121 SLC52A1Q9NWF4 448 aa23.4■■□□□ 1.34
CMTM3-212ENST00000566121 KDM5AP29375 1690 aaKnown RBP23.4■■□□□ 1.34
CMTM3-212ENST00000566121 NOS1P29475 1434 aa23.4■■□□□ 1.34
CMTM3-212ENST00000566121 UBR1Q8IWV7 1749 aa23.39■■□□□ 1.34
CMTM3-212ENST00000566121 RPRD2Q5VT52 1461 aaKnown RBP23.39■■□□□ 1.34
CMTM3-212ENST00000566121 CFAP65Q6ZU64 1925 aaKnown RBP23.36■■□□□ 1.33
CMTM3-212ENST00000566121 SCAF11Q99590 1463 aaKnown RBP23.36■■□□□ 1.33
CMTM3-212ENST00000566121 EFCAB6Q5THR3 1501 aa23.35■■□□□ 1.33
CMTM3-212ENST00000566121 UBAP1LF5GYI3 381 aa23.35■■□□□ 1.33
CMTM3-212ENST00000566121 IDI1Q13907 227 aa23.35■■□□□ 1.33
CMTM3-212ENST00000566121 TMEM2Q9UHN6 1383 aa23.35■■□□□ 1.33
CMTM3-212ENST00000566121 IQGAP1P46940 1657 aa23.35■■□□□ 1.33
CMTM3-212ENST00000566121 LTKP29376 864 aa23.34■■□□□ 1.33
CMTM3-212ENST00000566121 EID1Q9Y6B2 187 aa23.34■■□□□ 1.33
CMTM3-212ENST00000566121 TXNDC2Q86VQ3 553 aa23.33■■□□□ 1.33
CMTM3-212ENST00000566121 TOM1O60784 492 aa23.31■■□□□ 1.32
CMTM3-212ENST00000566121 PIK3C2BO00750 1634 aa23.27■■□□□ 1.32
CMTM3-212ENST00000566121 SYNMO15061 1565 aa23.27■■□□□ 1.32
CMTM3-212ENST00000566121 STAG3Q9UJ98 1225 aa23.26■■□□□ 1.31
CMTM3-212ENST00000566121 UNC13BO14795 1591 aa23.25■■□□□ 1.31
CMTM3-212ENST00000566121 TET3O43151 1660 aa23.25■■□□□ 1.31
CMTM3-212ENST00000566121 LRRC7Q96NW7 1537 aa23.23■■□□□ 1.31
CMTM3-212ENST00000566121 HDGFP51858 240 aaKnown RBP23.22■■□□□ 1.31
CMTM3-212ENST00000566121 ADGRB3O60242 1522 aa23.21■■□□□ 1.31
CMTM3-212ENST00000566121 RRBP1Q9P2E9 1410 aaKnown RBP23.2■■□□□ 1.3
CMTM3-212ENST00000566121 GCC2Q8IWJ2 1684 aa23.19■■□□□ 1.3
CMTM3-212ENST00000566121 STRCP1A6NGW2 1772 aa23.17■■□□□ 1.3
CMTM3-212ENST00000566121 KCNA6P17658 529 aa23.17■■□□□ 1.3
CMTM3-212ENST00000566121 IQGAP3Q86VI3 1631 aa23.17■■□□□ 1.3
CMTM3-212ENST00000566121 ZFYVE9O95405 1425 aa23.16■■□□□ 1.3
CMTM3-212ENST00000566121 ALKQ9UM73 1620 aa23.15■■□□□ 1.3
CMTM3-212ENST00000566121 NUP155O75694 1391 aa23.14■■□□□ 1.3
CMTM3-212ENST00000566121 DISP3Q9P2K9 1392 aa23.14■■□□□ 1.29
CMTM3-212ENST00000566121 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.13■■□□□ 1.29
CMTM3-212ENST00000566121 PLEKHG1Q9ULL1 1385 aa23.12■■□□□ 1.29
CMTM3-212ENST00000566121 TMEM131LA2VDJ0 1609 aa23.11■■□□□ 1.29
CMTM3-212ENST00000566121 TBX22Q9Y458 520 aa23.1■■□□□ 1.29
CMTM3-212ENST00000566121 HSPA1LP34931 641 aa23.09■■□□□ 1.29
CMTM3-212ENST00000566121 E9PCH4 1651 aa23.09■■□□□ 1.29
CMTM3-212ENST00000566121 PIP4K2BP78356 416 aa23.08■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms