RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 CAMSAP1Q5T5Y3 1602 aa23.41■■□□□ 1.34
CLN3-222ENST00000566083 PLA2R1Q13018 1463 aa23.4■■□□□ 1.34
CLN3-222ENST00000566083 ZNF142P52746 1687 aaPredicted RBP23.39■■□□□ 1.33
CLN3-222ENST00000566083 KDM5DQ9BY66 1539 aa23.38■■□□□ 1.33
CLN3-222ENST00000566083 MYO3AQ8NEV4 1616 aa23.38■■□□□ 1.33
CLN3-222ENST00000566083 CEP170BQ9Y4F5 1589 aaPredicted RBP23.37■■□□□ 1.33
CLN3-222ENST00000566083 MAST1Q9Y2H9 1570 aa23.37■■□□□ 1.33
CLN3-222ENST00000566083 A2ML1A8K2U0 1454 aa23.35■■□□□ 1.33
CLN3-222ENST00000566083 PZPP20742 1482 aa23.35■■□□□ 1.33
CLN3-222ENST00000566083 TNRQ92752 1358 aa23.34■■□□□ 1.33
CLN3-222ENST00000566083 NCKAP5LQ9HCH0 1330 aa23.32■■□□□ 1.32
CLN3-222ENST00000566083 TCOF1Q13428 1488 aaKnown RBP23.31■■□□□ 1.32
CLN3-222ENST00000566083 IQSEC2Q5JU85 1478 aa23.31■■□□□ 1.32
CLN3-222ENST00000566083 FBXO31Q5XUX0 539 aaPredicted RBP23.29■■□□□ 1.32
CLN3-222ENST00000566083 LTBP4Q8N2S1 1624 aa23.28■■□□□ 1.32
CLN3-222ENST00000566083 EIF2AK4Q9P2K8 1649 aaKnown RBP23.28■■□□□ 1.32
CLN3-222ENST00000566083 RNF17Q9BXT8 1623 aaKnown RBP23.27■■□□□ 1.31
CLN3-222ENST00000566083 NLRP1Q9C000 1473 aa23.26■■□□□ 1.31
CLN3-222ENST00000566083 THEMISQ8N1K5 641 aaPredicted RBP23.26■■□□□ 1.31
CLN3-222ENST00000566083 DNMT1P26358 1616 aaKnown RBP23.26■■□□□ 1.31
CLN3-222ENST00000566083 DUOX2Q9NRD8 1548 aa23.26■■□□□ 1.31
CLN3-222ENST00000566083 SHANK2Q9UPX8 1470 aa23.26■■□□□ 1.31
CLN3-222ENST00000566083 ZC3H13Q5T200 1668 aaKnown RBP23.24■■□□□ 1.31
CLN3-222ENST00000566083 ANKLE2Q86XL3 938 aa23.23■■□□□ 1.31
CLN3-222ENST00000566083 KIF15Q9NS87 1388 aa23.21■■□□□ 1.31
CLN3-222ENST00000566083 PTPN23Q9H3S7 1636 aa23.21■■□□□ 1.31
CLN3-222ENST00000566083 ABCC3O15438 1527 aa23.2■■□□□ 1.31
CLN3-222ENST00000566083 ABCC5O15440 1437 aa23.2■■□□□ 1.3
CLN3-222ENST00000566083 FGD6Q6ZV73 1430 aa23.2■■□□□ 1.3
CLN3-222ENST00000566083 ERBINQ96RT1 1412 aa23.2■■□□□ 1.3
CLN3-222ENST00000566083 ZNF335Q9H4Z2 1342 aaPredicted RBP23.19■■□□□ 1.3
CLN3-222ENST00000566083 UGGT1Q9NYU2 1555 aa23.18■■□□□ 1.3
CLN3-222ENST00000566083 DAPK1P53355 1430 aa23.17■■□□□ 1.3
CLN3-222ENST00000566083 RRP7BPQ9NSQ0 103 aa23.16■■□□□ 1.3
CLN3-222ENST00000566083 ANKRD30AQ9BXX3 1397 aa23.16■■□□□ 1.3
CLN3-222ENST00000566083 CROCC2H7BZ55 1655 aa23.15■■□□□ 1.3
CLN3-222ENST00000566083 SPATA31D1Q6ZQQ2 1576 aa23.15■■□□□ 1.3
CLN3-222ENST00000566083 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.15■■□□□ 1.3
CLN3-222ENST00000566083 KANK1Q14678 1352 aa23.14■■□□□ 1.29
CLN3-222ENST00000566083 POLR1AO95602 1720 aaPredicted RBP23.13■■□□□ 1.29
CLN3-222ENST00000566083 ARHGAP31Q2M1Z3 1444 aa23.13■■□□□ 1.29
CLN3-222ENST00000566083 ERVK-7P63135 1459 aa23.13■■□□□ 1.29
CLN3-222ENST00000566083 MROH1Q8NDA8 1641 aa23.12■■□□□ 1.29
CLN3-222ENST00000566083 PRDM15P57071 1507 aaPredicted RBP23.11■■□□□ 1.29
CLN3-222ENST00000566083 MED14O60244 1454 aa23.09■■□□□ 1.29
CLN3-222ENST00000566083 DEPDC5O75140 1603 aa23.09■■□□□ 1.29
CLN3-222ENST00000566083 NEURL4Q96JN8 1562 aa23.08■■□□□ 1.29
CLN3-222ENST00000566083 CPS1P31327 1500 aa23.08■■□□□ 1.28
CLN3-222ENST00000566083 UBAP1LF5GYI3 381 aa23.08■■□□□ 1.28
CLN3-222ENST00000566083 NPHP4O75161 1426 aaPredicted RBP23.07■■□□□ 1.28
CLN3-222ENST00000566083 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.07■■□□□ 1.28
CLN3-222ENST00000566083 CHIC2Q9UKJ5 165 aa23.07■■□□□ 1.28
CLN3-222ENST00000566083 CEP152O94986 1710 aa23.06■■□□□ 1.28
CLN3-222ENST00000566083 FAM50AQ14320 339 aaKnown RBP23.04■■□□□ 1.28
CLN3-222ENST00000566083 CFAP65Q6ZU64 1925 aaKnown RBP23.03■■□□□ 1.28
CLN3-222ENST00000566083 ADGRL2O95490 1459 aa23.02■■□□□ 1.28
CLN3-222ENST00000566083 TOM1O60784 492 aa23.01■■□□□ 1.27
CLN3-222ENST00000566083 LMTK2Q8IWU2 1503 aa23■■□□□ 1.27
CLN3-222ENST00000566083 EID1Q9Y6B2 187 aa22.99■■□□□ 1.27
CLN3-222ENST00000566083 IQGAP1P46940 1657 aa22.99■■□□□ 1.27
CLN3-222ENST00000566083 STAG3Q9UJ98 1225 aa22.98■■□□□ 1.27
CLN3-222ENST00000566083 UBR1Q8IWV7 1749 aa22.97■■□□□ 1.27
CLN3-222ENST00000566083 DISP3Q9P2K9 1392 aa22.97■■□□□ 1.27
CLN3-222ENST00000566083 SCAF11Q99590 1463 aaKnown RBP22.96■■□□□ 1.27
CLN3-222ENST00000566083 VWDEQ8N2E2 1590 aa22.96■■□□□ 1.27
CLN3-222ENST00000566083 TXNDC2Q86VQ3 553 aa22.96■■□□□ 1.27
CLN3-222ENST00000566083 ANKRD50Q9ULJ7 1429 aa22.95■■□□□ 1.26
CLN3-222ENST00000566083 SLIT1O75093 1534 aa22.95■■□□□ 1.26
CLN3-222ENST00000566083 ILDR2Q71H61 639 aa22.95■■□□□ 1.26
CLN3-222ENST00000566083 ARHGAP23Q9P227 1491 aa22.95■■□□□ 1.26
CLN3-222ENST00000566083 SLC52A1Q9NWF4 448 aa22.92■■□□□ 1.26
CLN3-222ENST00000566083 TMEM2Q9UHN6 1383 aa22.91■■□□□ 1.26
CLN3-222ENST00000566083 RPRD2Q5VT52 1461 aaKnown RBP22.9■■□□□ 1.26
CLN3-222ENST00000566083 KDM5AP29375 1690 aaKnown RBP22.9■■□□□ 1.26
CLN3-222ENST00000566083 LTKP29376 864 aa22.9■■□□□ 1.26
CLN3-222ENST00000566083 IDI1Q13907 227 aa22.9■■□□□ 1.26
CLN3-222ENST00000566083 EFCAB6Q5THR3 1501 aa22.88■■□□□ 1.25
CLN3-222ENST00000566083 NOS1P29475 1434 aa22.88■■□□□ 1.25
CLN3-222ENST00000566083 SCAF1Q9H7N4 1312 aaKnown RBP22.88■■□□□ 1.25
CLN3-222ENST00000566083 ROCK1Q13464 1354 aa22.87■■□□□ 1.25
CLN3-222ENST00000566083 PIK3C2BO00750 1634 aa22.86■■□□□ 1.25
CLN3-222ENST00000566083 PIP4K2BP78356 416 aa22.86■■□□□ 1.25
CLN3-222ENST00000566083 SYNMO15061 1565 aa22.84■■□□□ 1.25
CLN3-222ENST00000566083 HDGFP51858 240 aaKnown RBP22.83■■□□□ 1.25
CLN3-222ENST00000566083 LRRC7Q96NW7 1537 aa22.83■■□□□ 1.25
CLN3-222ENST00000566083 SOCS7O14512 581 aa22.8■■□□□ 1.24
CLN3-222ENST00000566083 HSPA1LP34931 641 aa22.79■■□□□ 1.24
CLN3-222ENST00000566083 TET3O43151 1660 aa22.79■■□□□ 1.24
CLN3-222ENST00000566083 ADGRB3O60242 1522 aa22.79■■□□□ 1.24
CLN3-222ENST00000566083 STRCP1A6NGW2 1772 aa22.76■■□□□ 1.23
CLN3-222ENST00000566083 UNC13BO14795 1591 aa22.76■■□□□ 1.23
CLN3-222ENST00000566083 KCNA6P17658 529 aa22.75■■□□□ 1.23
CLN3-222ENST00000566083 GCC2Q8IWJ2 1684 aa22.74■■□□□ 1.23
CLN3-222ENST00000566083 BCANQ96GW7 911 aa22.73■■□□□ 1.23
CLN3-222ENST00000566083 ITGAEP38570 1179 aa22.72■■□□□ 1.23
CLN3-222ENST00000566083 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.72■■□□□ 1.23
CLN3-222ENST00000566083 NUP155O75694 1391 aa22.71■■□□□ 1.23
CLN3-222ENST00000566083 PPP1R15AO75807 674 aaPredicted RBP22.7■■□□□ 1.22
CLN3-222ENST00000566083 SLC26A8Q96RN1 970 aa22.7■■□□□ 1.22
CLN3-222ENST00000566083 ALKQ9UM73 1620 aa22.69■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms