RNA–Protein interactions for RNA: ENST00000565023.1

VPS9D1-204, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 5

Gene VPS9D1, Length 775 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-204ENST00000565023 WASHC2CQ9Y4E1 1318 aa21.12■□□□□ 0.97
VPS9D1-204ENST00000565023 FAM50AQ14320 339 aaKnown RBP21.12■□□□□ 0.97
VPS9D1-204ENST00000565023 CHIC2Q9UKJ5 165 aa21.12■□□□□ 0.97
VPS9D1-204ENST00000565023 PPP6R1Q9UPN7 881 aa21.12■□□□□ 0.97
VPS9D1-204ENST00000565023 TCOF1Q13428 1488 aaKnown RBP21.12■□□□□ 0.97
VPS9D1-204ENST00000565023 DAPK1P53355 1430 aa21.12■□□□□ 0.97
VPS9D1-204ENST00000565023 NPATQ14207 1427 aa21.12■□□□□ 0.97
VPS9D1-204ENST00000565023 PTPRKQ15262 1439 aa21.12■□□□□ 0.97
VPS9D1-204ENST00000565023 SPATA31D1Q6ZQQ2 1576 aa21.11■□□□□ 0.97
VPS9D1-204ENST00000565023 STRCQ7RTU9 1775 aa21.11■□□□□ 0.97
VPS9D1-204ENST00000565023 KDM5DQ9BY66 1539 aa21.11■□□□□ 0.97
VPS9D1-204ENST00000565023 RRP7BPQ9NSQ0 103 aa21.11■□□□□ 0.97
VPS9D1-204ENST00000565023 MYO3AQ8NEV4 1616 aa21.1■□□□□ 0.97
VPS9D1-204ENST00000565023 KIF15Q9NS87 1388 aa21.09■□□□□ 0.97
VPS9D1-204ENST00000565023 DUOX2Q9NRD8 1548 aa21.08■□□□□ 0.96
VPS9D1-204ENST00000565023 EIF2AK4Q9P2K8 1649 aaKnown RBP21.07■□□□□ 0.96
VPS9D1-204ENST00000565023 SHANK2Q9UPX8 1470 aa21.07■□□□□ 0.96
VPS9D1-204ENST00000565023 FBXO31Q5XUX0 539 aaPredicted RBP21.07■□□□□ 0.96
VPS9D1-204ENST00000565023 RNF17Q9BXT8 1623 aaKnown RBP21.07■□□□□ 0.96
VPS9D1-204ENST00000565023 CEP152O94986 1710 aa21.06■□□□□ 0.96
VPS9D1-204ENST00000565023 CFAP65Q6ZU64 1925 aaKnown RBP21.06■□□□□ 0.96
VPS9D1-204ENST00000565023 CAMSAP1Q5T5Y3 1602 aa21.04■□□□□ 0.96
VPS9D1-204ENST00000565023 CEP170BQ9Y4F5 1589 aaPredicted RBP21.04■□□□□ 0.96
VPS9D1-204ENST00000565023 ZNF142P52746 1687 aaPredicted RBP21.03■□□□□ 0.96
VPS9D1-204ENST00000565023 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.02■□□□□ 0.963e-7■■□□□ 13.1
VPS9D1-204ENST00000565023 MROH1Q8NDA8 1641 aa21.02■□□□□ 0.96
VPS9D1-204ENST00000565023 FAM135AQ9P2D6 1515 aa21.02■□□□□ 0.96
VPS9D1-204ENST00000565023 PZPP20742 1482 aa21.01■□□□□ 0.95
VPS9D1-204ENST00000565023 TNRQ92752 1358 aa21.01■□□□□ 0.95
VPS9D1-204ENST00000565023 ABCC3O15438 1527 aa21.01■□□□□ 0.95
VPS9D1-204ENST00000565023 ZC3H13Q5T200 1668 aaKnown RBP21.01■□□□□ 0.95
VPS9D1-204ENST00000565023 ANKRD30AQ9BXX3 1397 aa21■□□□□ 0.95
VPS9D1-204ENST00000565023 DMRT2Q9Y5R5 561 aa21■□□□□ 0.95
VPS9D1-204ENST00000565023 NCOA1Q15788 1441 aa20.99■□□□□ 0.95
VPS9D1-204ENST00000565023 NCKAP5LQ9HCH0 1330 aa20.99■□□□□ 0.95
VPS9D1-204ENST00000565023 ERBINQ96RT1 1412 aa20.98■□□□□ 0.95
VPS9D1-204ENST00000565023 A2ML1A8K2U0 1454 aa20.96■□□□□ 0.95
VPS9D1-204ENST00000565023 ITGAEP38570 1179 aa20.95■□□□□ 0.94
VPS9D1-204ENST00000565023 PRDM15P57071 1507 aaPredicted RBP20.94■□□□□ 0.94
VPS9D1-204ENST00000565023 PTPRTO14522 1441 aa20.93■□□□□ 0.94
VPS9D1-204ENST00000565023 ADGRL2O95490 1459 aa20.92■□□□□ 0.94
VPS9D1-204ENST00000565023 DEPDC5O75140 1603 aa20.91■□□□□ 0.94
VPS9D1-204ENST00000565023 KANK1Q14678 1352 aa20.91■□□□□ 0.94
VPS9D1-204ENST00000565023 ERVK-7P63135 1459 aa20.9■□□□□ 0.94
VPS9D1-204ENST00000565023 PLA2R1Q13018 1463 aa20.89■□□□□ 0.94
VPS9D1-204ENST00000565023 POLR1AO95602 1720 aaPredicted RBP20.87■□□□□ 0.93
VPS9D1-204ENST00000565023 UGGT1Q9NYU2 1555 aa20.87■□□□□ 0.93
VPS9D1-204ENST00000565023 NLRP1Q9C000 1473 aa20.87■□□□□ 0.93
VPS9D1-204ENST00000565023 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.86■□□□□ 0.93
VPS9D1-204ENST00000565023 PKD2Q13563 968 aa20.86■□□□□ 0.93
VPS9D1-204ENST00000565023 ANKRD50Q9ULJ7 1429 aa20.86■□□□□ 0.93
VPS9D1-204ENST00000565023 LTBP4Q8N2S1 1624 aa20.84■□□□□ 0.93
VPS9D1-204ENST00000565023 THEMISQ8N1K5 641 aaPredicted RBP20.83■□□□□ 0.93
VPS9D1-204ENST00000565023 IQSEC2Q5JU85 1478 aa20.81■□□□□ 0.92
VPS9D1-204ENST00000565023 ZNF335Q9H4Z2 1342 aaPredicted RBP20.81■□□□□ 0.92
VPS9D1-204ENST00000565023 VWDEQ8N2E2 1590 aa20.8■□□□□ 0.92
VPS9D1-204ENST00000565023 ARHGAP31Q2M1Z3 1444 aa20.8■□□□□ 0.92
VPS9D1-204ENST00000565023 ANKLE2Q86XL3 938 aa20.8■□□□□ 0.92
VPS9D1-204ENST00000565023 NEURL4Q96JN8 1562 aa20.8■□□□□ 0.92
VPS9D1-204ENST00000565023 UBR1Q8IWV7 1749 aa20.78■□□□□ 0.92
VPS9D1-204ENST00000565023 LMTK2Q8IWU2 1503 aa20.78■□□□□ 0.92
VPS9D1-204ENST00000565023 EFCAB6Q5THR3 1501 aa20.77■□□□□ 0.92
VPS9D1-204ENST00000565023 PIK3C2BO00750 1634 aa20.76■□□□□ 0.91
VPS9D1-204ENST00000565023 STAG3Q9UJ98 1225 aa20.76■□□□□ 0.91
VPS9D1-204ENST00000565023 ROCK1Q13464 1354 aa20.75■□□□□ 0.91
VPS9D1-204ENST00000565023 UNC13BO14795 1591 aa20.74■□□□□ 0.91
VPS9D1-204ENST00000565023 TET3O43151 1660 aa20.73■□□□□ 0.91
VPS9D1-204ENST00000565023 SYNMO15061 1565 aa20.72■□□□□ 0.91
VPS9D1-204ENST00000565023 NPHP4O75161 1426 aaPredicted RBP20.72■□□□□ 0.91
VPS9D1-204ENST00000565023 RRBP1Q9P2E9 1410 aaKnown RBP20.71■□□□□ 0.91
VPS9D1-204ENST00000565023 IQGAP1P46940 1657 aa20.71■□□□□ 0.91
VPS9D1-204ENST00000565023 GCC2Q8IWJ2 1684 aa20.71■□□□□ 0.91
VPS9D1-204ENST00000565023 IDI1Q13907 227 aa20.7■□□□□ 0.9
VPS9D1-204ENST00000565023 TXNDC2Q86VQ3 553 aa20.67■□□□□ 0.9
VPS9D1-204ENST00000565023 NUP155O75694 1391 aa20.67■□□□□ 0.9
VPS9D1-204ENST00000565023 NOS1P29475 1434 aa20.67■□□□□ 0.9
VPS9D1-204ENST00000565023 IQGAP3Q86VI3 1631 aa20.67■□□□□ 0.9
VPS9D1-204ENST00000565023 E9PCH4 1651 aa20.67■□□□□ 0.9
VPS9D1-204ENST00000565023 LTKP29376 864 aa20.66■□□□□ 0.9
VPS9D1-204ENST00000565023 MED14O60244 1454 aa20.66■□□□□ 0.9
VPS9D1-204ENST00000565023 SCAF11Q99590 1463 aaKnown RBP20.66■□□□□ 0.9
VPS9D1-204ENST00000565023 MYO5BQ9ULV0 1848 aa20.65■□□□□ 0.9
VPS9D1-204ENST00000565023 SENP3Q9H4L4 574 aaPredicted RBP20.64■□□□□ 0.89
VPS9D1-204ENST00000565023 EID1Q9Y6B2 187 aa20.64■□□□□ 0.89
VPS9D1-204ENST00000565023 SLIT1O75093 1534 aa20.63■□□□□ 0.89
VPS9D1-204ENST00000565023 RPRD2Q5VT52 1461 aaKnown RBP20.63■□□□□ 0.89
VPS9D1-204ENST00000565023 ARHGAP23Q9P227 1491 aa20.63■□□□□ 0.89
VPS9D1-204ENST00000565023 CHGAP10645 457 aaKnown RBP20.63■□□□□ 0.89
VPS9D1-204ENST00000565023 ADGRB3O60242 1522 aa20.63■□□□□ 0.89
VPS9D1-204ENST00000565023 TMEM2Q9UHN6 1383 aa20.61■□□□□ 0.89
VPS9D1-204ENST00000565023 UBAP1LF5GYI3 381 aa20.61■□□□□ 0.89
VPS9D1-204ENST00000565023 SLC52A1Q9NWF4 448 aa20.61■□□□□ 0.89
VPS9D1-204ENST00000565023 KDM5AP29375 1690 aaKnown RBP20.6■□□□□ 0.89
VPS9D1-204ENST00000565023 STRCP1A6NGW2 1772 aa20.59■□□□□ 0.89
VPS9D1-204ENST00000565023 CPS1P31327 1500 aa20.59■□□□□ 0.89
VPS9D1-204ENST00000565023 BCANQ96GW7 911 aa20.58■□□□□ 0.89
VPS9D1-204ENST00000565023 NAIPQ13075 1403 aa20.58■□□□□ 0.88
VPS9D1-204ENST00000565023 SCAF1Q9H7N4 1312 aaKnown RBP20.55■□□□□ 0.88
VPS9D1-204ENST00000565023 TRIM52Q96A61 297 aa20.55■□□□□ 0.88
VPS9D1-204ENST00000565023 MED1Q15648 1581 aaPredicted RBP20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms