RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 CAMSAP1Q5T5Y3 1602 aa16.99■□□□□ 0.31
VPS39-208ENST00000564994 FAM135AQ9P2D6 1515 aa16.98■□□□□ 0.31
VPS39-208ENST00000564994 RNF17Q9BXT8 1623 aaKnown RBP16.98■□□□□ 0.31
VPS39-208ENST00000564994 CEP170BQ9Y4F5 1589 aaPredicted RBP16.98■□□□□ 0.31
VPS39-208ENST00000564994 EIF2AK4Q9P2K8 1649 aaKnown RBP16.97■□□□□ 0.31
VPS39-208ENST00000564994 DMRT2Q9Y5R5 561 aa16.97■□□□□ 0.31
VPS39-208ENST00000564994 PTPRTO14522 1441 aa16.96■□□□□ 0.31
VPS39-208ENST00000564994 ABCC5O15440 1437 aa16.96■□□□□ 0.31
VPS39-208ENST00000564994 FGD6Q6ZV73 1430 aa16.96■□□□□ 0.31
VPS39-208ENST00000564994 TCOF1Q13428 1488 aaKnown RBP16.96■□□□□ 0.31
VPS39-208ENST00000564994 FBXO31Q5XUX0 539 aaPredicted RBP16.95■□□□□ 0.3
VPS39-208ENST00000564994 DNMT1P26358 1616 aaKnown RBP16.95■□□□□ 0.3
VPS39-208ENST00000564994 MROH1Q8NDA8 1641 aa16.95■□□□□ 0.3
VPS39-208ENST00000564994 WASHC2CQ9Y4E1 1318 aa16.95■□□□□ 0.3
VPS39-208ENST00000564994 PZPP20742 1482 aa16.94■□□□□ 0.3
VPS39-208ENST00000564994 SHANK2Q9UPX8 1470 aa16.94■□□□□ 0.3
VPS39-208ENST00000564994 CERKQ8TCT0 537 aa16.94■□□□□ 0.3
VPS39-208ENST00000564994 DUOX2Q9NRD8 1548 aa16.93■□□□□ 0.3
VPS39-208ENST00000564994 DAPK1P53355 1430 aa16.93■□□□□ 0.3
VPS39-208ENST00000564994 ZC3H13Q5T200 1668 aaKnown RBP16.92■□□□□ 0.3
VPS39-208ENST00000564994 ABCC3O15438 1527 aa16.91■□□□□ 0.3
VPS39-208ENST00000564994 CEP152O94986 1710 aa16.91■□□□□ 0.3
VPS39-208ENST00000564994 A2ML1A8K2U0 1454 aa16.91■□□□□ 0.3
VPS39-208ENST00000564994 PLA2R1Q13018 1463 aa16.91■□□□□ 0.3
VPS39-208ENST00000564994 NCKAP5LQ9HCH0 1330 aa16.91■□□□□ 0.3
VPS39-208ENST00000564994 TNRQ92752 1358 aa16.9■□□□□ 0.3
VPS39-208ENST00000564994 KIF15Q9NS87 1388 aa16.89■□□□□ 0.3
VPS39-208ENST00000564994 CFAP65Q6ZU64 1925 aaKnown RBP16.89■□□□□ 0.29
VPS39-208ENST00000564994 RRP7BPQ9NSQ0 103 aa16.88■□□□□ 0.29
VPS39-208ENST00000564994 LTBP4Q8N2S1 1624 aa16.88■□□□□ 0.29
VPS39-208ENST00000564994 ERBINQ96RT1 1412 aa16.87■□□□□ 0.29
VPS39-208ENST00000564994 PRDM15P57071 1507 aaPredicted RBP16.86■□□□□ 0.29
VPS39-208ENST00000564994 DEPDC5O75140 1603 aa16.85■□□□□ 0.29
VPS39-208ENST00000564994 SPATA31D1Q6ZQQ2 1576 aa16.85■□□□□ 0.29
VPS39-208ENST00000564994 POLR1AO95602 1720 aaPredicted RBP16.84■□□□□ 0.29
VPS39-208ENST00000564994 PKD2Q13563 968 aa16.84■□□□□ 0.29
VPS39-208ENST00000564994 CHIC2Q9UKJ5 165 aa16.84■□□□□ 0.29
VPS39-208ENST00000564994 NLRP1Q9C000 1473 aa16.84■□□□□ 0.29
VPS39-208ENST00000564994 NEURL4Q96JN8 1562 aa16.82■□□□□ 0.28
VPS39-208ENST00000564994 ERVK-7P63135 1459 aa16.82■□□□□ 0.28
VPS39-208ENST00000564994 ANKRD30AQ9BXX3 1397 aa16.82■□□□□ 0.28
VPS39-208ENST00000564994 UGGT1Q9NYU2 1555 aa16.81■□□□□ 0.28
VPS39-208ENST00000564994 FAM50AQ14320 339 aaKnown RBP16.81■□□□□ 0.28
VPS39-208ENST00000564994 ADGRL2O95490 1459 aa16.8■□□□□ 0.28
VPS39-208ENST00000564994 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.79■□□□□ 0.28
VPS39-208ENST00000564994 ZNF335Q9H4Z2 1342 aaPredicted RBP16.79■□□□□ 0.28
VPS39-208ENST00000564994 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.78■□□□□ 0.28
VPS39-208ENST00000564994 ARHGAP31Q2M1Z3 1444 aa16.78■□□□□ 0.28
VPS39-208ENST00000564994 VWDEQ8N2E2 1590 aa16.77■□□□□ 0.28
VPS39-208ENST00000564994 THEMISQ8N1K5 641 aaPredicted RBP16.77■□□□□ 0.28
VPS39-208ENST00000564994 UBR1Q8IWV7 1749 aa16.76■□□□□ 0.27
VPS39-208ENST00000564994 IQSEC2Q5JU85 1478 aa16.75■□□□□ 0.27
VPS39-208ENST00000564994 LMTK2Q8IWU2 1503 aa16.75■□□□□ 0.27
VPS39-208ENST00000564994 ANKLE2Q86XL3 938 aa16.73■□□□□ 0.27
VPS39-208ENST00000564994 PPARGC1BQ86YN6 1023 aaKnown RBP16.73■□□□□ 0.27
VPS39-208ENST00000564994 KANK1Q14678 1352 aa16.73■□□□□ 0.27
VPS39-208ENST00000564994 MED14O60244 1454 aa16.73■□□□□ 0.27
VPS39-208ENST00000564994 ANKRD50Q9ULJ7 1429 aa16.71■□□□□ 0.27
VPS39-208ENST00000564994 IQGAP1P46940 1657 aa16.71■□□□□ 0.27
VPS39-208ENST00000564994 NPHP4O75161 1426 aaPredicted RBP16.7■□□□□ 0.26
VPS39-208ENST00000564994 EFCAB6Q5THR3 1501 aa16.7■□□□□ 0.26
VPS39-208ENST00000564994 PIK3C2BO00750 1634 aa16.7■□□□□ 0.26
VPS39-208ENST00000564994 SYNMO15061 1565 aa16.69■□□□□ 0.26
VPS39-208ENST00000564994 UNC13BO14795 1591 aa16.67■□□□□ 0.26
VPS39-208ENST00000564994 ARHGAP23Q9P227 1491 aa16.67■□□□□ 0.26
VPS39-208ENST00000564994 SLIT1O75093 1534 aa16.66■□□□□ 0.26
VPS39-208ENST00000564994 NOS1P29475 1434 aa16.66■□□□□ 0.26
VPS39-208ENST00000564994 STRCP1A6NGW2 1772 aa16.66■□□□□ 0.26
VPS39-208ENST00000564994 KDM5AP29375 1690 aaKnown RBP16.65■□□□□ 0.26
VPS39-208ENST00000564994 ROCK1Q13464 1354 aa16.65■□□□□ 0.26
VPS39-208ENST00000564994 TET3O43151 1660 aa16.65■□□□□ 0.26
VPS39-208ENST00000564994 CPS1P31327 1500 aa16.65■□□□□ 0.26
VPS39-208ENST00000564994 LTKP29376 864 aa16.64■□□□□ 0.25
VPS39-208ENST00000564994 IDI1Q13907 227 aa16.64■□□□□ 0.25
VPS39-208ENST00000564994 SCAF11Q99590 1463 aaKnown RBP16.64■□□□□ 0.25
VPS39-208ENST00000564994 GCC2Q8IWJ2 1684 aa16.63■□□□□ 0.25
VPS39-208ENST00000564994 ITGAEP38570 1179 aa16.62■□□□□ 0.25
VPS39-208ENST00000564994 RPRD2Q5VT52 1461 aaKnown RBP16.61■□□□□ 0.25
VPS39-208ENST00000564994 UBAP1LF5GYI3 381 aa16.61■□□□□ 0.25
VPS39-208ENST00000564994 TXNDC2Q86VQ3 553 aa16.61■□□□□ 0.25
VPS39-208ENST00000564994 TMEM2Q9UHN6 1383 aa16.61■□□□□ 0.25
VPS39-208ENST00000564994 E9PCH4 1651 aa16.6■□□□□ 0.25
VPS39-208ENST00000564994 MYO5BQ9ULV0 1848 aa16.6■□□□□ 0.25
VPS39-208ENST00000564994 ADGRB3O60242 1522 aa16.6■□□□□ 0.25
VPS39-208ENST00000564994 IQGAP3Q86VI3 1631 aa16.59■□□□□ 0.25
VPS39-208ENST00000564994 STAG3Q9UJ98 1225 aa16.58■□□□□ 0.24
VPS39-208ENST00000564994 RRBP1Q9P2E9 1410 aaKnown RBP16.58■□□□□ 0.24
VPS39-208ENST00000564994 SLC52A1Q9NWF4 448 aa16.56■□□□□ 0.24
VPS39-208ENST00000564994 EID1Q9Y6B2 187 aa16.56■□□□□ 0.24
VPS39-208ENST00000564994 ALKQ9UM73 1620 aa16.56■□□□□ 0.24
VPS39-208ENST00000564994 LRRC7Q96NW7 1537 aa16.55■□□□□ 0.24
VPS39-208ENST00000564994 TMEM131LA2VDJ0 1609 aa16.54■□□□□ 0.24
VPS39-208ENST00000564994 XIRP1Q702N8 1843 aaKnown RBP16.54■□□□□ 0.24
VPS39-208ENST00000564994 NUP155O75694 1391 aa16.53■□□□□ 0.24
VPS39-208ENST00000564994 TOM1O60784 492 aa16.5■□□□□ 0.23
VPS39-208ENST00000564994 ZFYVE9O95405 1425 aa16.5■□□□□ 0.23
VPS39-208ENST00000564994 PIP4K2BP78356 416 aa16.49■□□□□ 0.23
VPS39-208ENST00000564994 NAIPQ13075 1403 aa16.48■□□□□ 0.23
VPS39-208ENST00000564994 SLC26A8Q96RN1 970 aa16.48■□□□□ 0.23
VPS39-208ENST00000564994 SCAF1Q9H7N4 1312 aaKnown RBP16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 92.6 ms