RNA–Protein interactions for RNA: ENST00000563396.1

SMPD3-204, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 3

Gene SMPD3, Length 608 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-204ENST00000563396 MROH1Q8NDA8 1641 aa22.09■■□□□ 1.13
SMPD3-204ENST00000563396 PTPRKQ15262 1439 aa22.09■■□□□ 1.13
SMPD3-204ENST00000563396 DUOX2Q9NRD8 1548 aa22.07■■□□□ 1.12
SMPD3-204ENST00000563396 TSPY4P0CV99 314 aa22.07■■□□□ 1.12
SMPD3-204ENST00000563396 TSPY10P0CW01 314 aa22.07■■□□□ 1.12
SMPD3-204ENST00000563396 ABCC5O15440 1437 aa22.06■■□□□ 1.12
SMPD3-204ENST00000563396 CEP170BQ9Y4F5 1589 aaPredicted RBP22.05■■□□□ 1.12
SMPD3-204ENST00000563396 DAPK1P53355 1430 aa22.05■■□□□ 1.12
SMPD3-204ENST00000563396 GGT6Q6P531 493 aa22.04■■□□□ 1.12
SMPD3-204ENST00000563396 PZPP20742 1482 aa22.03■■□□□ 1.12
SMPD3-204ENST00000563396 DEPDC5O75140 1603 aa22.03■■□□□ 1.12
SMPD3-204ENST00000563396 PRDM15P57071 1507 aaPredicted RBP22.03■■□□□ 1.12
SMPD3-204ENST00000563396 ABCC3O15438 1527 aa22.01■■□□□ 1.11
SMPD3-204ENST00000563396 ERBINQ96RT1 1412 aa22■■□□□ 1.11
SMPD3-204ENST00000563396 KIF3BO15066 747 aa22■■□□□ 1.11
SMPD3-204ENST00000563396 NCOA1Q15788 1441 aa21.99■■□□□ 1.11
SMPD3-204ENST00000563396 CEP152O94986 1710 aa21.99■■□□□ 1.11
SMPD3-204ENST00000563396 CAMSAP1Q5T5Y3 1602 aa21.98■■□□□ 1.11
SMPD3-204ENST00000563396 KIF15Q9NS87 1388 aa21.98■■□□□ 1.11
SMPD3-204ENST00000563396 ADGRL2O95490 1459 aa21.97■■□□□ 1.11
SMPD3-204ENST00000563396 PLA2R1Q13018 1463 aa21.97■■□□□ 1.11
SMPD3-204ENST00000563396 PTPRTO14522 1441 aa21.95■■□□□ 1.1
SMPD3-204ENST00000563396 A2ML1A8K2U0 1454 aa21.95■■□□□ 1.1
SMPD3-204ENST00000563396 SPATA31D1Q6ZQQ2 1576 aa21.95■■□□□ 1.1
SMPD3-204ENST00000563396 POLR1AO95602 1720 aaPredicted RBP21.91■■□□□ 1.1
SMPD3-204ENST00000563396 WASHC2CQ9Y4E1 1318 aa21.9■■□□□ 1.1
SMPD3-204ENST00000563396 ILDR1Q86SU0 546 aaPredicted RBP21.9■■□□□ 1.1
SMPD3-204ENST00000563396 VWDEQ8N2E2 1590 aa21.9■■□□□ 1.1
SMPD3-204ENST00000563396 TNRQ92752 1358 aa21.89■■□□□ 1.1
SMPD3-204ENST00000563396 NLRP1Q9C000 1473 aa21.89■■□□□ 1.09
SMPD3-204ENST00000563396 ANKRD30AQ9BXX3 1397 aa21.87■■□□□ 1.09
SMPD3-204ENST00000563396 DMRT2Q9Y5R5 561 aa21.87■■□□□ 1.09
SMPD3-204ENST00000563396 ERVK-7P63135 1459 aa21.87■■□□□ 1.09
SMPD3-204ENST00000563396 LMTK2Q8IWU2 1503 aa21.86■■□□□ 1.09
SMPD3-204ENST00000563396 ARHGAP31Q2M1Z3 1444 aa21.85■■□□□ 1.09
SMPD3-204ENST00000563396 NEURL4Q96JN8 1562 aa21.83■■□□□ 1.09
SMPD3-204ENST00000563396 LTBP4Q8N2S1 1624 aa21.82■■□□□ 1.08
SMPD3-204ENST00000563396 FBXO31Q5XUX0 539 aaPredicted RBP21.81■■□□□ 1.08
SMPD3-204ENST00000563396 RRP7BPQ9NSQ0 103 aa21.81■■□□□ 1.08
SMPD3-204ENST00000563396 UGGT1Q9NYU2 1555 aa21.81■■□□□ 1.08
SMPD3-204ENST00000563396 EFCAB6Q5THR3 1501 aa21.8■■□□□ 1.08
SMPD3-204ENST00000563396 UNC13BO14795 1591 aa21.8■■□□□ 1.08
SMPD3-204ENST00000563396 FBXO41Q8TF61 875 aa21.8■■□□□ 1.08
SMPD3-204ENST00000563396 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.79■■□□□ 1.08
SMPD3-204ENST00000563396 UBR1Q8IWV7 1749 aa21.79■■□□□ 1.08
SMPD3-204ENST00000563396 PKD2Q13563 968 aa21.77■■□□□ 1.08
SMPD3-204ENST00000563396 KDM5AP29375 1690 aaKnown RBP21.76■■□□□ 1.07
SMPD3-204ENST00000563396 FAM50AQ14320 339 aaKnown RBP21.76■■□□□ 1.07
SMPD3-204ENST00000563396 ROCK1Q13464 1354 aa21.75■■□□□ 1.07
SMPD3-204ENST00000563396 ANKRD50Q9ULJ7 1429 aa21.75■■□□□ 1.07
SMPD3-204ENST00000563396 IQSEC2Q5JU85 1478 aa21.75■■□□□ 1.07
SMPD3-204ENST00000563396 CFAP65Q6ZU64 1925 aaKnown RBP21.74■■□□□ 1.07
SMPD3-204ENST00000563396 CHIC2Q9UKJ5 165 aa21.74■■□□□ 1.07
SMPD3-204ENST00000563396 KANK1Q14678 1352 aa21.74■■□□□ 1.07
SMPD3-204ENST00000563396 TET3O43151 1660 aa21.73■■□□□ 1.07
SMPD3-204ENST00000563396 GCC2Q8IWJ2 1684 aa21.73■■□□□ 1.07
SMPD3-204ENST00000563396 CERKQ8TCT0 537 aa21.73■■□□□ 1.07
SMPD3-204ENST00000563396 MED14O60244 1454 aa21.72■■□□□ 1.07
SMPD3-204ENST00000563396 NCKAP5LQ9HCH0 1330 aa21.72■■□□□ 1.07
SMPD3-204ENST00000563396 SYNMO15061 1565 aa21.71■■□□□ 1.07
SMPD3-204ENST00000563396 PIK3C2BO00750 1634 aa21.71■■□□□ 1.07
SMPD3-204ENST00000563396 RRBP1Q9P2E9 1410 aaKnown RBP21.71■■□□□ 1.07
SMPD3-204ENST00000563396 RPRD2Q5VT52 1461 aaKnown RBP21.7■■□□□ 1.06
SMPD3-204ENST00000563396 IQGAP3Q86VI3 1631 aa21.69■■□□□ 1.06
SMPD3-204ENST00000563396 IQGAP1P46940 1657 aa21.69■■□□□ 1.06
SMPD3-204ENST00000563396 SLIT1O75093 1534 aa21.68■■□□□ 1.06
SMPD3-204ENST00000563396 ARHGAP23Q9P227 1491 aa21.67■■□□□ 1.06
SMPD3-204ENST00000563396 NOS1P29475 1434 aa21.67■■□□□ 1.06
SMPD3-204ENST00000563396 THEMISQ8N1K5 641 aaPredicted RBP21.65■■□□□ 1.06
SMPD3-204ENST00000563396 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.63■■□□□ 1.05
SMPD3-204ENST00000563396 ADGRB3O60242 1522 aa21.63■■□□□ 1.05
SMPD3-204ENST00000563396 E9PCH4 1651 aa21.63■■□□□ 1.05
SMPD3-204ENST00000563396 NPHP4O75161 1426 aaPredicted RBP21.62■■□□□ 1.05
SMPD3-204ENST00000563396 CPS1P31327 1500 aa21.6■■□□□ 1.05
SMPD3-204ENST00000563396 ZNF335Q9H4Z2 1342 aaPredicted RBP21.6■■□□□ 1.05
SMPD3-204ENST00000563396 SCAF11Q99590 1463 aaKnown RBP21.6■■□□□ 1.05
SMPD3-204ENST00000563396 ANKLE2Q86XL3 938 aa21.59■■□□□ 1.05
SMPD3-204ENST00000563396 PPARGC1BQ86YN6 1023 aaKnown RBP21.57■■□□□ 1.04
SMPD3-204ENST00000563396 STRCP1A6NGW2 1772 aa21.56■■□□□ 1.04
SMPD3-204ENST00000563396 MYO5BQ9ULV0 1848 aa21.54■■□□□ 1.04
SMPD3-204ENST00000563396 TMEM2Q9UHN6 1383 aa21.53■■□□□ 1.04
SMPD3-204ENST00000563396 TMEM131LA2VDJ0 1609 aa21.52■■□□□ 1.04
SMPD3-204ENST00000563396 SPHKAPQ2M3C7 1700 aa21.5■■□□□ 1.03
SMPD3-204ENST00000563396 NAIPQ13075 1403 aa21.49■■□□□ 1.03
SMPD3-204ENST00000563396 IDI1Q13907 227 aa21.48■■□□□ 1.03
SMPD3-204ENST00000563396 SLC52A1Q9NWF4 448 aa21.48■■□□□ 1.03
SMPD3-204ENST00000563396 HFM1A2PYH4 1435 aa21.46■■□□□ 1.03
SMPD3-204ENST00000563396 ITGAEP38570 1179 aa21.46■■□□□ 1.03
SMPD3-204ENST00000563396 LTKP29376 864 aa21.45■■□□□ 1.02
SMPD3-204ENST00000563396 NUP155O75694 1391 aa21.45■■□□□ 1.02
SMPD3-204ENST00000563396 ZFYVE9O95405 1425 aa21.45■■□□□ 1.02
SMPD3-204ENST00000563396 NWD1Q149M9 1564 aa21.42■■□□□ 1.02
SMPD3-204ENST00000563396 XIRP1Q702N8 1843 aaKnown RBP21.42■■□□□ 1.02
SMPD3-204ENST00000563396 ALKQ9UM73 1620 aa21.42■■□□□ 1.02
SMPD3-204ENST00000563396 LRRC7Q96NW7 1537 aa21.41■■□□□ 1.02
SMPD3-204ENST00000563396 TXNDC2Q86VQ3 553 aa21.41■■□□□ 1.02
SMPD3-204ENST00000563396 EID1Q9Y6B2 187 aa21.4■■□□□ 1.02
SMPD3-204ENST00000563396 TRPM2O94759 1503 aa21.39■■□□□ 1.02
SMPD3-204ENST00000563396 STAG3Q9UJ98 1225 aa21.39■■□□□ 1.01
SMPD3-204ENST00000563396 RIMS2Q9UQ26 1411 aa21.36■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms