RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 TCOF1Q13428 1488 aaKnown RBP26.12■■□□□ 1.77
CLK3-210ENST00000563112 SHANK2Q9UPX8 1470 aa26.11■■□□□ 1.77
CLK3-210ENST00000563112 FBXO41Q8TF61 875 aa26.11■■□□□ 1.77
CLK3-210ENST00000563112 DUOX2Q9NRD8 1548 aa26.1■■□□□ 1.77
CLK3-210ENST00000563112 EIF2AK4Q9P2K8 1649 aaKnown RBP26.1■■□□□ 1.77
CLK3-210ENST00000563112 DAPK1P53355 1430 aa26.09■■□□□ 1.77
CLK3-210ENST00000563112 MYO3AQ8NEV4 1616 aa26.09■■□□□ 1.77
CLK3-210ENST00000563112 CROCC2H7BZ55 1655 aa26.09■■□□□ 1.77
CLK3-210ENST00000563112 DNMT1P26358 1616 aaKnown RBP26.08■■□□□ 1.77
CLK3-210ENST00000563112 KIF15Q9NS87 1388 aa26.07■■□□□ 1.76
CLK3-210ENST00000563112 RNF17Q9BXT8 1623 aaKnown RBP26.07■■□□□ 1.76
CLK3-210ENST00000563112 NCOA1Q15788 1441 aa26.07■■□□□ 1.76
CLK3-210ENST00000563112 PZPP20742 1482 aa26.07■■□□□ 1.76
CLK3-210ENST00000563112 RRP7BPQ9NSQ0 103 aa26.07■■□□□ 1.76
CLK3-210ENST00000563112 CAMSAP1Q5T5Y3 1602 aa26.06■■□□□ 1.76
CLK3-210ENST00000563112 PTPRTO14522 1441 aa26.06■■□□□ 1.76
CLK3-210ENST00000563112 FBXO31Q5XUX0 539 aaPredicted RBP26.06■■□□□ 1.76
CLK3-210ENST00000563112 ZNF142P52746 1687 aaPredicted RBP26.06■■□□□ 1.76
CLK3-210ENST00000563112 CEP170BQ9Y4F5 1589 aaPredicted RBP26.05■■□□□ 1.76
CLK3-210ENST00000563112 TNRQ92752 1358 aa26.05■■□□□ 1.76
CLK3-210ENST00000563112 FAM50AQ14320 339 aaKnown RBP26.04■■□□□ 1.76
CLK3-210ENST00000563112 CERKQ8TCT0 537 aa26.04■■□□□ 1.76
CLK3-210ENST00000563112 CHIC2Q9UKJ5 165 aa26.03■■□□□ 1.76
CLK3-210ENST00000563112 ANKRD30AQ9BXX3 1397 aa26.03■■□□□ 1.76
CLK3-210ENST00000563112 A2ML1A8K2U0 1454 aa26.02■■□□□ 1.76
CLK3-210ENST00000563112 ZC3H13Q5T200 1668 aaKnown RBP26.01■■□□□ 1.75
CLK3-210ENST00000563112 ERBINQ96RT1 1412 aa26.01■■□□□ 1.75
CLK3-210ENST00000563112 ABCC3O15438 1527 aa25.99■■□□□ 1.75
CLK3-210ENST00000563112 PKD2Q13563 968 aa25.99■■□□□ 1.75
CLK3-210ENST00000563112 PLA2R1Q13018 1463 aa25.98■■□□□ 1.75
CLK3-210ENST00000563112 NCKAP5LQ9HCH0 1330 aa25.98■■□□□ 1.75
CLK3-210ENST00000563112 MROH1Q8NDA8 1641 aa25.96■■□□□ 1.75
CLK3-210ENST00000563112 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.94■■□□□ 1.74
CLK3-210ENST00000563112 KANK1Q14678 1352 aa25.94■■□□□ 1.74
CLK3-210ENST00000563112 NLRP1Q9C000 1473 aa25.93■■□□□ 1.74
CLK3-210ENST00000563112 CEP152O94986 1710 aa25.92■■□□□ 1.74
CLK3-210ENST00000563112 THEMISQ8N1K5 641 aaPredicted RBP25.91■■□□□ 1.74
CLK3-210ENST00000563112 PRDM15P57071 1507 aaPredicted RBP25.9■■□□□ 1.74
CLK3-210ENST00000563112 ADGRL2O95490 1459 aa25.9■■□□□ 1.74
CLK3-210ENST00000563112 SPATA31D1Q6ZQQ2 1576 aa25.88■■□□□ 1.73
CLK3-210ENST00000563112 ERVK-7P63135 1459 aa25.87■■□□□ 1.73
CLK3-210ENST00000563112 DEPDC5O75140 1603 aa25.86■■□□□ 1.73
CLK3-210ENST00000563112 PPARGC1BQ86YN6 1023 aaKnown RBP25.86■■□□□ 1.73
CLK3-210ENST00000563112 CFAP65Q6ZU64 1925 aaKnown RBP25.86■■□□□ 1.73
CLK3-210ENST00000563112 UGGT1Q9NYU2 1555 aa25.86■■□□□ 1.73
CLK3-210ENST00000563112 ANKLE2Q86XL3 938 aa25.85■■□□□ 1.73
CLK3-210ENST00000563112 ARHGAP31Q2M1Z3 1444 aa25.85■■□□□ 1.73
CLK3-210ENST00000563112 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.83■■□□□ 1.73
CLK3-210ENST00000563112 LTBP4Q8N2S1 1624 aa25.81■■□□□ 1.72
CLK3-210ENST00000563112 ANKRD50Q9ULJ7 1429 aa25.8■■□□□ 1.72
CLK3-210ENST00000563112 POLR1AO95602 1720 aaPredicted RBP25.8■■□□□ 1.72
CLK3-210ENST00000563112 ZNF335Q9H4Z2 1342 aaPredicted RBP25.78■■□□□ 1.72
CLK3-210ENST00000563112 LMTK2Q8IWU2 1503 aa25.77■■□□□ 1.72
CLK3-210ENST00000563112 VWDEQ8N2E2 1590 aa25.76■■□□□ 1.71
CLK3-210ENST00000563112 IQSEC2Q5JU85 1478 aa25.74■■□□□ 1.71
CLK3-210ENST00000563112 ROCK1Q13464 1354 aa25.74■■□□□ 1.71
CLK3-210ENST00000563112 ITGAEP38570 1179 aa25.74■■□□□ 1.71
CLK3-210ENST00000563112 NEURL4Q96JN8 1562 aa25.73■■□□□ 1.71
CLK3-210ENST00000563112 STAG3Q9UJ98 1225 aa25.71■■□□□ 1.71
CLK3-210ENST00000563112 NPHP4O75161 1426 aaPredicted RBP25.71■■□□□ 1.71
CLK3-210ENST00000563112 UBR1Q8IWV7 1749 aa25.69■■□□□ 1.7
CLK3-210ENST00000563112 MED14O60244 1454 aa25.69■■□□□ 1.7
CLK3-210ENST00000563112 EFCAB6Q5THR3 1501 aa25.68■■□□□ 1.7
CLK3-210ENST00000563112 IDI1Q13907 227 aa25.64■■□□□ 1.7
CLK3-210ENST00000563112 TXNDC2Q86VQ3 553 aa25.64■■□□□ 1.7
CLK3-210ENST00000563112 EID1Q9Y6B2 187 aa25.64■■□□□ 1.7
CLK3-210ENST00000563112 PIK3C2BO00750 1634 aa25.63■■□□□ 1.69
CLK3-210ENST00000563112 RPRD2Q5VT52 1461 aaKnown RBP25.63■■□□□ 1.69
CLK3-210ENST00000563112 IQGAP1P46940 1657 aa25.63■■□□□ 1.69
CLK3-210ENST00000563112 NOS1P29475 1434 aa25.63■■□□□ 1.69
CLK3-210ENST00000563112 UNC13BO14795 1591 aa25.62■■□□□ 1.69
CLK3-210ENST00000563112 SLC52A1Q9NWF4 448 aa25.62■■□□□ 1.69
CLK3-210ENST00000563112 SCAF11Q99590 1463 aaKnown RBP25.61■■□□□ 1.69
CLK3-210ENST00000563112 SLIT1O75093 1534 aa25.61■■□□□ 1.69
CLK3-210ENST00000563112 TET3O43151 1660 aa25.61■■□□□ 1.69
CLK3-210ENST00000563112 CPS1P31327 1500 aa25.6■■□□□ 1.69
CLK3-210ENST00000563112 RRBP1Q9P2E9 1410 aaKnown RBP25.6■■□□□ 1.69
CLK3-210ENST00000563112 ARHGAP23Q9P227 1491 aa25.6■■□□□ 1.69
CLK3-210ENST00000563112 UBAP1LF5GYI3 381 aa25.59■■□□□ 1.69
CLK3-210ENST00000563112 SYNMO15061 1565 aa25.59■■□□□ 1.69
CLK3-210ENST00000563112 LTKP29376 864 aa25.58■■□□□ 1.69
CLK3-210ENST00000563112 KDM5AP29375 1690 aaKnown RBP25.58■■□□□ 1.68
CLK3-210ENST00000563112 TMEM2Q9UHN6 1383 aa25.57■■□□□ 1.68
CLK3-210ENST00000563112 GCC2Q8IWJ2 1684 aa25.57■■□□□ 1.68
CLK3-210ENST00000563112 NUP155O75694 1391 aa25.56■■□□□ 1.68
CLK3-210ENST00000563112 IQGAP3Q86VI3 1631 aa25.52■■□□□ 1.68
CLK3-210ENST00000563112 ADGRB3O60242 1522 aa25.51■■□□□ 1.67
CLK3-210ENST00000563112 TOM1O60784 492 aa25.48■■□□□ 1.67
CLK3-210ENST00000563112 E9PCH4 1651 aa25.48■■□□□ 1.67
CLK3-210ENST00000563112 HDGFP51858 240 aaKnown RBP25.47■■□□□ 1.67
CLK3-210ENST00000563112 CHGAP10645 457 aaKnown RBP25.45■■□□□ 1.66
CLK3-210ENST00000563112 BCANQ96GW7 911 aa25.44■■□□□ 1.66
CLK3-210ENST00000563112 STRCP1A6NGW2 1772 aa25.41■■□□□ 1.66
CLK3-210ENST00000563112 SCAF1Q9H7N4 1312 aaKnown RBP25.41■■□□□ 1.66
CLK3-210ENST00000563112 NAIPQ13075 1403 aa25.41■■□□□ 1.66
CLK3-210ENST00000563112 PPP1R15AO75807 674 aaPredicted RBP25.41■■□□□ 1.66
CLK3-210ENST00000563112 LRRC7Q96NW7 1537 aa25.4■■□□□ 1.66
CLK3-210ENST00000563112 TMEM131LA2VDJ0 1609 aa25.39■■□□□ 1.66
CLK3-210ENST00000563112 PIP4K2BP78356 416 aa25.39■■□□□ 1.66
CLK3-210ENST00000563112 SLC26A8Q96RN1 970 aa25.39■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms