RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 IQGAP3Q86VI3 1631 aa20.01■□□□□ 0.79
VPS39-206ENST00000562662 YEATS2Q9ULM3 1422 aa20.01■□□□□ 0.79
VPS39-206ENST00000562662 RNF17Q9BXT8 1623 aaKnown RBP19.99■□□□□ 0.79
VPS39-206ENST00000562662 MROH1Q8NDA8 1641 aa19.98■□□□□ 0.79
VPS39-206ENST00000562662 ARHGEF40Q8TER5 1519 aa19.97■□□□□ 0.79
VPS39-206ENST00000562662 MPHOSPH9Q99550 1183 aa19.97■□□□□ 0.79
VPS39-206ENST00000562662 FAM135AQ9P2D6 1515 aa19.97■□□□□ 0.79
VPS39-206ENST00000562662 NUP155O75694 1391 aa19.96■□□□□ 0.79
VPS39-206ENST00000562662 REREQ9P2R6 1566 aa19.96■□□□□ 0.79
VPS39-206ENST00000562662 ZEB1P37275 1124 aaPredicted RBP19.96■□□□□ 0.79
VPS39-206ENST00000562662 PRDM15P57071 1507 aaPredicted RBP19.96■□□□□ 0.79
VPS39-206ENST00000562662 VWDEQ8N2E2 1590 aa19.95■□□□□ 0.78
VPS39-206ENST00000562662 ATP10AO60312 1499 aa19.93■□□□□ 0.78
VPS39-206ENST00000562662 SLC4A1APQ9BWU0 796 aaKnown RBP19.92■□□□□ 0.78
VPS39-206ENST00000562662 SIGLEC1Q9BZZ2 1709 aa19.91■□□□□ 0.78
VPS39-206ENST00000562662 KIF3BO15066 747 aa19.89■□□□□ 0.77
VPS39-206ENST00000562662 CEP152O94986 1710 aa19.88■□□□□ 0.77
VPS39-206ENST00000562662 TET3O43151 1660 aa19.88■□□□□ 0.77
VPS39-206ENST00000562662 AGLP35573 1532 aa19.88■□□□□ 0.77
VPS39-206ENST00000562662 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.87■□□□□ 0.77
VPS39-206ENST00000562662 E9PCH4 1651 aa19.86■□□□□ 0.77
VPS39-206ENST00000562662 ANKRD30BQ9BXX2 1392 aa19.85■□□□□ 0.77
VPS39-206ENST00000562662 PKD2Q13563 968 aa19.85■□□□□ 0.77
VPS39-206ENST00000562662 FOXD1Q16676 465 aa19.85■□□□□ 0.77
VPS39-206ENST00000562662 LMTK2Q8IWU2 1503 aa19.85■□□□□ 0.77
VPS39-206ENST00000562662 KANK1Q14678 1352 aa19.83■□□□□ 0.77
VPS39-206ENST00000562662 SIN3AQ96ST3 1273 aa19.83■□□□□ 0.77
VPS39-206ENST00000562662 ZC3H13Q5T200 1668 aaKnown RBP19.83■□□□□ 0.76
VPS39-206ENST00000562662 EFCAB6Q5THR3 1501 aa19.81■□□□□ 0.76
VPS39-206ENST00000562662 ABCC3O15438 1527 aa19.8■□□□□ 0.76
VPS39-206ENST00000562662 CAMSAP1Q5T5Y3 1602 aa19.79■□□□□ 0.76
VPS39-206ENST00000562662 SPHKAPQ2M3C7 1700 aa19.79■□□□□ 0.76
VPS39-206ENST00000562662 GGT6Q6P531 493 aa19.77■□□□□ 0.76
VPS39-206ENST00000562662 RPRD2Q5VT52 1461 aaKnown RBP19.76■□□□□ 0.75
VPS39-206ENST00000562662 PLA2R1Q13018 1463 aa19.75■□□□□ 0.75
VPS39-206ENST00000562662 NEUROD1Q13562 356 aa19.75■□□□□ 0.75
VPS39-206ENST00000562662 CFAP65Q6ZU64 1925 aaKnown RBP19.72■□□□□ 0.75
VPS39-206ENST00000562662 CLTCQ00610 1675 aaKnown RBP19.71■□□□□ 0.75
VPS39-206ENST00000562662 TRPM2O94759 1503 aa19.71■□□□□ 0.75
VPS39-206ENST00000562662 PTPRTO14522 1441 aa19.71■□□□□ 0.75
VPS39-206ENST00000562662 TIMELESSQ9UNS1 1208 aa19.71■□□□□ 0.75
VPS39-206ENST00000562662 WASHC2CQ9Y4E1 1318 aa19.7■□□□□ 0.74
VPS39-206ENST00000562662 NPATQ14207 1427 aa19.68■□□□□ 0.74
VPS39-206ENST00000562662 ARHGAP31Q2M1Z3 1444 aa19.68■□□□□ 0.74
VPS39-206ENST00000562662 PPP6R1Q9UPN7 881 aa19.68■□□□□ 0.74
VPS39-206ENST00000562662 TONSLQ96HA7 1378 aa19.68■□□□□ 0.74
VPS39-206ENST00000562662 CLTCL1P53675 1640 aa19.67■□□□□ 0.74
VPS39-206ENST00000562662 CCDC144AA2RUR9 1427 aa19.66■□□□□ 0.74
VPS39-206ENST00000562662 PREX1Q8TCU6 1659 aa19.65■□□□□ 0.74
VPS39-206ENST00000562662 MROH2AA6NES4 1674 aa19.62■□□□□ 0.73
VPS39-206ENST00000562662 MLECQ14165 292 aa19.62■□□□□ 0.73
VPS39-206ENST00000562662 SYNMO15061 1565 aa19.61■□□□□ 0.73
VPS39-206ENST00000562662 NOS1P29475 1434 aa19.61■□□□□ 0.73
VPS39-206ENST00000562662 ARID4BQ4LE39 1312 aaPredicted RBP19.61■□□□□ 0.73
VPS39-206ENST00000562662 KIF1BO60333 1816 aa19.61■□□□□ 0.73
VPS39-206ENST00000562662 FER1L4A9Z1Z3 1794 aa19.61■□□□□ 0.73
VPS39-206ENST00000562662 CNTLNQ9NXG0 1405 aa19.6■□□□□ 0.73
VPS39-206ENST00000562662 PIK3C2BO00750 1634 aa19.6■□□□□ 0.73
VPS39-206ENST00000562662 UGGT1Q9NYU2 1555 aa19.6■□□□□ 0.73
VPS39-206ENST00000562662 NEURL4Q96JN8 1562 aa19.58■□□□□ 0.73
VPS39-206ENST00000562662 PPP1R15AO75807 674 aaPredicted RBP19.58■□□□□ 0.72
VPS39-206ENST00000562662 L3MBTL2Q969R5 705 aa19.58■□□□□ 0.72
VPS39-206ENST00000562662 ERVK-7P63135 1459 aa19.56■□□□□ 0.72
VPS39-206ENST00000562662 SPATA31E1Q6ZUB1 1445 aa19.56■□□□□ 0.72
VPS39-206ENST00000562662 SPATA31D1Q6ZQQ2 1576 aa19.55■□□□□ 0.72
VPS39-206ENST00000562662 ADGRB3O60242 1522 aa19.52■□□□□ 0.72
VPS39-206ENST00000562662 C3P01024 1663 aa19.52■□□□□ 0.71
VPS39-206ENST00000562662 ADAMTSL3P82987 1691 aa19.52■□□□□ 0.71
VPS39-206ENST00000562662 IFT172Q9UG01 1749 aa19.51■□□□□ 0.71
VPS39-206ENST00000562662 ZMYM3Q14202 1370 aa19.51■□□□□ 0.71
VPS39-206ENST00000562662 MADDQ8WXG6 1647 aa19.51■□□□□ 0.71
VPS39-206ENST00000562662 ESF1Q9H501 851 aaKnown RBP19.5■□□□□ 0.71
VPS39-206ENST00000562662 MYO5BQ9ULV0 1848 aa19.49■□□□□ 0.71
VPS39-206ENST00000562662 FBXO31Q5XUX0 539 aaPredicted RBP19.48■□□□□ 0.71
VPS39-206ENST00000562662 RIMS1Q86UR5 1692 aaKnown RBP19.48■□□□□ 0.71
VPS39-206ENST00000562662 UHRF1BP1Q6BDS2 1440 aa19.48■□□□□ 0.71
VPS39-206ENST00000562662 PPLO60437 1756 aa19.45■□□□□ 0.7
VPS39-206ENST00000562662 TMEM131LA2VDJ0 1609 aa19.45■□□□□ 0.7
VPS39-206ENST00000562662 RGL3Q3MIN7 710 aa19.45■□□□□ 0.7
VPS39-206ENST00000562662 NBPF8Q3BBV2 869 aa19.44■□□□□ 0.7
VPS39-206ENST00000562662 SLC52A1Q9NWF4 448 aa19.44■□□□□ 0.7
VPS39-206ENST00000562662 DCAF11Q8TEB1 546 aa19.43■□□□□ 0.7
VPS39-206ENST00000562662 IDI1Q13907 227 aa19.42■□□□□ 0.7
VPS39-206ENST00000562662 TRPM1Q7Z4N2 1603 aa19.41■□□□□ 0.7
VPS39-206ENST00000562662 PRAG1Q86YV5 1406 aa19.41■□□□□ 0.7
VPS39-206ENST00000562662 MYOM2P54296 1465 aa19.4■□□□□ 0.7
VPS39-206ENST00000562662 KDM2AQ9Y2K7 1162 aa19.39■□□□□ 0.69
VPS39-206ENST00000562662 TNRQ92752 1358 aa19.39■□□□□ 0.69
VPS39-206ENST00000562662 RALGAPBQ86X10 1494 aa19.39■□□□□ 0.69
VPS39-206ENST00000562662 KDM5AP29375 1690 aaKnown RBP19.39■□□□□ 0.69
VPS39-206ENST00000562662 NEXMIFQ5QGS0 1516 aa19.38■□□□□ 0.69
VPS39-206ENST00000562662 CHGAP10645 457 aaKnown RBP19.36■□□□□ 0.69
VPS39-206ENST00000562662 CEBPAP49715 358 aaPredicted RBP19.36■□□□□ 0.69
VPS39-206ENST00000562662 UBR1Q8IWV7 1749 aa19.36■□□□□ 0.69
VPS39-206ENST00000562662 NRXN1Q9ULB1 1477 aa19.35■□□□□ 0.69
VPS39-206ENST00000562662 KIAA1210Q9ULL0 1709 aa19.35■□□□□ 0.69
VPS39-206ENST00000562662 STAC3Q96MF2 364 aa19.35■□□□□ 0.69
VPS39-206ENST00000562662 RPGRIP1LQ68CZ1 1315 aa19.34■□□□□ 0.69
VPS39-206ENST00000562662 ZNF326Q5BKZ1 582 aaKnown RBP19.34■□□□□ 0.69
VPS39-206ENST00000562662 A2ML1A8K2U0 1454 aa19.34■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms