RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 UBAP1LF5GYI3 381 aa30.29■■■□□ 2.44
VPS35-202ENST00000561713 A2ML1A8K2U0 1454 aa30.27■■■□□ 2.44
VPS35-202ENST00000561713 DNMT1P26358 1616 aaKnown RBP30.25■■■□□ 2.43
VPS35-202ENST00000561713 KIF3BO15066 747 aa30.25■■■□□ 2.43
VPS35-202ENST00000561713 LRRC9Q6ZRR7 1453 aa30.25■■■□□ 2.43
VPS35-202ENST00000561713 FBXO31Q5XUX0 539 aaPredicted RBP30.24■■■□□ 2.43
VPS35-202ENST00000561713 CCDC141Q6ZP82 1450 aa30.23■■■□□ 2.43
VPS35-202ENST00000561713 TNRQ92752 1358 aa30.19■■■□□ 2.42
VPS35-202ENST00000561713 KDM5DQ9BY66 1539 aa30.17■■■□□ 2.42
VPS35-202ENST00000561713 ARHGEF5Q12774 1597 aa30.16■■■□□ 2.42
VPS35-202ENST00000561713 PZPP20742 1482 aa30.16■■■□□ 2.42
VPS35-202ENST00000561713 WASHC2CQ9Y4E1 1318 aa30.16■■■□□ 2.42
VPS35-202ENST00000561713 RSPH4AQ5TD94 716 aa30.14■■■□□ 2.42
VPS35-202ENST00000561713 NEURL4Q96JN8 1562 aa30.13■■■□□ 2.41
VPS35-202ENST00000561713 POLR1AO95602 1720 aaPredicted RBP30.11■■■□□ 2.41
VPS35-202ENST00000561713 MAP3K1Q13233 1512 aa30.11■■■□□ 2.41
VPS35-202ENST00000561713 FAM135AQ9P2D6 1515 aa30.11■■■□□ 2.41
VPS35-202ENST00000561713 KANK4Q5T7N3 995 aaPredicted RBP30.1■■■□□ 2.41
VPS35-202ENST00000561713 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP30.08■■■□□ 2.41
VPS35-202ENST00000561713 MIA2Q96PC5 1412 aa30.07■■■□□ 2.4
VPS35-202ENST00000561713 TSPY4P0CV99 314 aa30.06■■■□□ 2.4
VPS35-202ENST00000561713 TSPY10P0CW01 314 aa30.06■■■□□ 2.4
VPS35-202ENST00000561713 ANKLE2Q86XL3 938 aa30.06■■■□□ 2.4
VPS35-202ENST00000561713 SHANK2Q9UPX8 1470 aa30.06■■■□□ 2.4
VPS35-202ENST00000561713 SCAF1Q9H7N4 1312 aaKnown RBP30.04■■■□□ 2.4
VPS35-202ENST00000561713 PIP4K2BP78356 416 aa30.04■■■□□ 2.4
VPS35-202ENST00000561713 THEMISQ8N1K5 641 aaPredicted RBP30.04■■■□□ 2.4
VPS35-202ENST00000561713 CPS1P31327 1500 aa30.04■■■□□ 2.4
VPS35-202ENST00000561713 MYOM3Q5VTT5 1437 aa30.03■■■□□ 2.4
VPS35-202ENST00000561713 NLRP1Q9C000 1473 aa30.02■■■□□ 2.4
VPS35-202ENST00000561713 MAST1Q9Y2H9 1570 aa30.02■■■□□ 2.4
VPS35-202ENST00000561713 HSPA1LP34931 641 aa30.01■■■□□ 2.39
VPS35-202ENST00000561713 UGGT1Q9NYU2 1555 aa30.01■■■□□ 2.39
VPS35-202ENST00000561713 CROCC2H7BZ55 1655 aa29.99■■■□□ 2.39
VPS35-202ENST00000561713 TOM1O60784 492 aa29.99■■■□□ 2.39
VPS35-202ENST00000561713 VWDEQ8N2E2 1590 aa29.98■■■□□ 2.39
VPS35-202ENST00000561713 NPHP4O75161 1426 aaPredicted RBP29.96■■■□□ 2.39
VPS35-202ENST00000561713 MED14O60244 1454 aa29.96■■■□□ 2.39
VPS35-202ENST00000561713 RNF17Q9BXT8 1623 aaKnown RBP29.96■■■□□ 2.39
VPS35-202ENST00000561713 DEPDC5O75140 1603 aa29.94■■■□□ 2.38
VPS35-202ENST00000561713 ABCC3O15438 1527 aa29.94■■■□□ 2.38
VPS35-202ENST00000561713 PTPN23Q9H3S7 1636 aa29.93■■■□□ 2.38
VPS35-202ENST00000561713 EIF2AK4Q9P2K8 1649 aaKnown RBP29.91■■■□□ 2.38
VPS35-202ENST00000561713 CEP152O94986 1710 aa29.91■■■□□ 2.38
VPS35-202ENST00000561713 MROH1Q8NDA8 1641 aa29.89■■■□□ 2.38
VPS35-202ENST00000561713 IQGAP1P46940 1657 aa29.88■■■□□ 2.37
VPS35-202ENST00000561713 ZC3H13Q5T200 1668 aaKnown RBP29.88■■■□□ 2.37
VPS35-202ENST00000561713 ERVK-7P63135 1459 aa29.87■■■□□ 2.37
VPS35-202ENST00000561713 MED1Q15648 1581 aaPredicted RBP29.86■■■□□ 2.37
VPS35-202ENST00000561713 ALKQ9UM73 1620 aa29.86■■■□□ 2.37
VPS35-202ENST00000561713 STRCP1A6NGW2 1772 aa29.82■■■□□ 2.36
VPS35-202ENST00000561713 APLP2Q06481 763 aa29.82■■■□□ 2.36
VPS35-202ENST00000561713 CFAP65Q6ZU64 1925 aaKnown RBP29.81■■■□□ 2.36
VPS35-202ENST00000561713 DUOX2Q9NRD8 1548 aa29.8■■■□□ 2.36
VPS35-202ENST00000561713 LRRC7Q96NW7 1537 aa29.79■■■□□ 2.36
VPS35-202ENST00000561713 ABCC5O15440 1437 aa29.79■■■□□ 2.36
VPS35-202ENST00000561713 FGD6Q6ZV73 1430 aa29.79■■■□□ 2.36
VPS35-202ENST00000561713 UBR1Q8IWV7 1749 aa29.76■■■□□ 2.36
VPS35-202ENST00000561713 DAPK1P53355 1430 aa29.75■■■□□ 2.35
VPS35-202ENST00000561713 SENP3Q9H4L4 574 aaPredicted RBP29.75■■■□□ 2.35
VPS35-202ENST00000561713 KIF15Q9NS87 1388 aa29.74■■■□□ 2.35
VPS35-202ENST00000561713 PRDM15P57071 1507 aaPredicted RBP29.72■■■□□ 2.35
VPS35-202ENST00000561713 LTKP29376 864 aa29.72■■■□□ 2.35
VPS35-202ENST00000561713 SCAF11Q99590 1463 aaKnown RBP29.72■■■□□ 2.35
VPS35-202ENST00000561713 SYNMO15061 1565 aa29.71■■■□□ 2.35
VPS35-202ENST00000561713 RRP7BPQ9NSQ0 103 aa29.7■■■□□ 2.35
VPS35-202ENST00000561713 TXNDC2Q86VQ3 553 aa29.69■■■□□ 2.34
VPS35-202ENST00000561713 ARHGAP31Q2M1Z3 1444 aa29.68■■■□□ 2.34
VPS35-202ENST00000561713 ARHGAP23Q9P227 1491 aa29.68■■■□□ 2.34
VPS35-202ENST00000561713 PHF23Q9BUL5 403 aaPredicted RBP29.67■■■□□ 2.34
VPS35-202ENST00000561713 SLIT1O75093 1534 aa29.66■■■□□ 2.34
VPS35-202ENST00000561713 ERBINQ96RT1 1412 aa29.66■■■□□ 2.34
VPS35-202ENST00000561713 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.66■■■□□ 2.34
VPS35-202ENST00000561713 EID1Q9Y6B2 187 aa29.61■■■□□ 2.33
VPS35-202ENST00000561713 PIK3C2BO00750 1634 aa29.6■■■□□ 2.33
VPS35-202ENST00000561713 CHIC2Q9UKJ5 165 aa29.59■■■□□ 2.33
VPS35-202ENST00000561713 TMEM2Q9UHN6 1383 aa29.57■■■□□ 2.32
VPS35-202ENST00000561713 XIRP1Q702N8 1843 aaKnown RBP29.56■■■□□ 2.32
VPS35-202ENST00000561713 KANK1Q14678 1352 aa29.55■■■□□ 2.32
VPS35-202ENST00000561713 STAG3Q9UJ98 1225 aa29.55■■■□□ 2.32
VPS35-202ENST00000561713 ANKRD30AQ9BXX3 1397 aa29.53■■■□□ 2.32
VPS35-202ENST00000561713 IDI1Q13907 227 aa29.52■■■□□ 2.32
VPS35-202ENST00000561713 ADGRL2O95490 1459 aa29.51■■■□□ 2.31
VPS35-202ENST00000561713 FAM50AQ14320 339 aaKnown RBP29.51■■■□□ 2.31
VPS35-202ENST00000561713 EFCAB6Q5THR3 1501 aa29.5■■■□□ 2.31
VPS35-202ENST00000561713 LMTK2Q8IWU2 1503 aa29.49■■■□□ 2.31
VPS35-202ENST00000561713 KDM5AP29375 1690 aaKnown RBP29.46■■■□□ 2.31
VPS35-202ENST00000561713 TMEM94Q12767 1356 aa29.45■■■□□ 2.31
VPS35-202ENST00000561713 SLC26A8Q96RN1 970 aa29.45■■■□□ 2.31
VPS35-202ENST00000561713 RGS17Q9UGC6 210 aaPredicted RBP29.45■■■□□ 2.31
VPS35-202ENST00000561713 KCNA6P17658 529 aa29.43■■■□□ 2.3
VPS35-202ENST00000561713 FAM135BQ49AJ0 1406 aa29.43■■■□□ 2.3
VPS35-202ENST00000561713 TET3O43151 1660 aa29.43■■■□□ 2.3
VPS35-202ENST00000561713 RBM33Q96EV2 1170 aaKnown RBP29.42■■■□□ 2.3
VPS35-202ENST00000561713 NOS1P29475 1434 aa29.41■■■□□ 2.3
VPS35-202ENST00000561713 PROSER2Q86WR7 435 aaPredicted RBP29.39■■■□□ 2.3
VPS35-202ENST00000561713 ADGRB3O60242 1522 aa29.37■■■□□ 2.29
VPS35-202ENST00000561713 ANKRD50Q9ULJ7 1429 aa29.36■■■□□ 2.29
VPS35-202ENST00000561713 UNC13BO14795 1591 aa29.35■■■□□ 2.29
VPS35-202ENST00000561713 SLC52A1Q9NWF4 448 aa29.35■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms