RNA–Protein interactions for RNA: ENST00000561065.1

LMX1B-204, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMX1B, Length 1,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-204ENST00000561065 FGD6Q6ZV73 1430 aa25.1■■□□□ 1.61
LMX1B-204ENST00000561065 DNMT1P26358 1616 aaKnown RBP25.1■■□□□ 1.61
LMX1B-204ENST00000561065 CAMSAP1Q5T5Y3 1602 aa25.1■■□□□ 1.61
LMX1B-204ENST00000561065 TCOF1Q13428 1488 aaKnown RBP25.1■■□□□ 1.61
LMX1B-204ENST00000561065 SHANK2Q9UPX8 1470 aa25.09■■□□□ 1.61
LMX1B-204ENST00000561065 TSPY4P0CV99 314 aa25.09■■□□□ 1.61
LMX1B-204ENST00000561065 TSPY10P0CW01 314 aa25.09■■□□□ 1.61
LMX1B-204ENST00000561065 PPP6R1Q9UPN7 881 aa25.09■■□□□ 1.61
LMX1B-204ENST00000561065 ABCC5O15440 1437 aa25.07■■□□□ 1.6
LMX1B-204ENST00000561065 APLP2Q06481 763 aa25.07■■□□□ 1.6
LMX1B-204ENST00000561065 PZPP20742 1482 aa25.05■■□□□ 1.6
LMX1B-204ENST00000561065 ZC3H13Q5T200 1668 aaKnown RBP25.05■■□□□ 1.6
LMX1B-204ENST00000561065 ABCC3O15438 1527 aa25.03■■□□□ 1.6
LMX1B-204ENST00000561065 CEP152O94986 1710 aa25.03■■□□□ 1.6
LMX1B-204ENST00000561065 DAPK1P53355 1430 aa25.03■■□□□ 1.6
LMX1B-204ENST00000561065 DUOX2Q9NRD8 1548 aa25.03■■□□□ 1.6
LMX1B-204ENST00000561065 FBXO41Q8TF61 875 aa25.02■■□□□ 1.6
LMX1B-204ENST00000561065 PTPRTO14522 1441 aa25.01■■□□□ 1.59
LMX1B-204ENST00000561065 A2ML1A8K2U0 1454 aa24.99■■□□□ 1.59
LMX1B-204ENST00000561065 PLA2R1Q13018 1463 aa24.99■■□□□ 1.59
LMX1B-204ENST00000561065 KIF15Q9NS87 1388 aa24.98■■□□□ 1.59
LMX1B-204ENST00000561065 PRDM15P57071 1507 aaPredicted RBP24.97■■□□□ 1.59
LMX1B-204ENST00000561065 FBXO31Q5XUX0 539 aaPredicted RBP24.97■■□□□ 1.59
LMX1B-204ENST00000561065 WASHC2CQ9Y4E1 1318 aa24.96■■□□□ 1.59
LMX1B-204ENST00000561065 DEPDC5O75140 1603 aa24.96■■□□□ 1.59
LMX1B-204ENST00000561065 TNRQ92752 1358 aa24.96■■□□□ 1.59
LMX1B-204ENST00000561065 DMRT2Q9Y5R5 561 aa24.95■■□□□ 1.58
LMX1B-204ENST00000561065 ERBINQ96RT1 1412 aa24.94■■□□□ 1.58
LMX1B-204ENST00000561065 LTBP4Q8N2S1 1624 aa24.94■■□□□ 1.58
LMX1B-204ENST00000561065 CERKQ8TCT0 537 aa24.93■■□□□ 1.58
LMX1B-204ENST00000561065 SPATA31D1Q6ZQQ2 1576 aa24.93■■□□□ 1.58
LMX1B-204ENST00000561065 POLR1AO95602 1720 aaPredicted RBP24.92■■□□□ 1.58
LMX1B-204ENST00000561065 NCKAP5LQ9HCH0 1330 aa24.9■■□□□ 1.58
LMX1B-204ENST00000561065 NEURL4Q96JN8 1562 aa24.9■■□□□ 1.58
LMX1B-204ENST00000561065 ERVK-7P63135 1459 aa24.89■■□□□ 1.57
LMX1B-204ENST00000561065 ADGRL2O95490 1459 aa24.88■■□□□ 1.57
LMX1B-204ENST00000561065 RRP7BPQ9NSQ0 103 aa24.87■■□□□ 1.57
LMX1B-204ENST00000561065 CFAP65Q6ZU64 1925 aaKnown RBP24.86■■□□□ 1.57
LMX1B-204ENST00000561065 NLRP1Q9C000 1473 aa24.86■■□□□ 1.57
LMX1B-204ENST00000561065 VWDEQ8N2E2 1590 aa24.83■■□□□ 1.57
LMX1B-204ENST00000561065 UGGT1Q9NYU2 1555 aa24.83■■□□□ 1.57
LMX1B-204ENST00000561065 CHIC2Q9UKJ5 165 aa24.83■■□□□ 1.56
LMX1B-204ENST00000561065 ANKRD30AQ9BXX3 1397 aa24.82■■□□□ 1.56
LMX1B-204ENST00000561065 PKD2Q13563 968 aa24.81■■□□□ 1.56
LMX1B-204ENST00000561065 UBR1Q8IWV7 1749 aa24.79■■□□□ 1.56
LMX1B-204ENST00000561065 ARHGAP31Q2M1Z3 1444 aa24.79■■□□□ 1.56
LMX1B-204ENST00000561065 LMTK2Q8IWU2 1503 aa24.78■■□□□ 1.56
LMX1B-204ENST00000561065 FAM50AQ14320 339 aaKnown RBP24.78■■□□□ 1.56
LMX1B-204ENST00000561065 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.77■■□□□ 1.56
LMX1B-204ENST00000561065 ZNF335Q9H4Z2 1342 aaPredicted RBP24.77■■□□□ 1.56
LMX1B-204ENST00000561065 IQSEC2Q5JU85 1478 aa24.74■■□□□ 1.55
LMX1B-204ENST00000561065 EFCAB6Q5THR3 1501 aa24.73■■□□□ 1.55
LMX1B-204ENST00000561065 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.72■■□□□ 1.55
LMX1B-204ENST00000561065 IQGAP1P46940 1657 aa24.71■■□□□ 1.55
LMX1B-204ENST00000561065 PIK3C2BO00750 1634 aa24.71■■□□□ 1.55
LMX1B-204ENST00000561065 MED14O60244 1454 aa24.7■■□□□ 1.55
LMX1B-204ENST00000561065 SYNMO15061 1565 aa24.7■■□□□ 1.54
LMX1B-204ENST00000561065 ANKRD50Q9ULJ7 1429 aa24.7■■□□□ 1.54
LMX1B-204ENST00000561065 UNC13BO14795 1591 aa24.69■■□□□ 1.54
LMX1B-204ENST00000561065 KANK1Q14678 1352 aa24.68■■□□□ 1.54
LMX1B-204ENST00000561065 PPARGC1BQ86YN6 1023 aaKnown RBP24.67■■□□□ 1.54
LMX1B-204ENST00000561065 THEMISQ8N1K5 641 aaPredicted RBP24.67■■□□□ 1.54
LMX1B-204ENST00000561065 NPHP4O75161 1426 aaPredicted RBP24.66■■□□□ 1.54
LMX1B-204ENST00000561065 TET3O43151 1660 aa24.64■■□□□ 1.54
LMX1B-204ENST00000561065 ARHGAP23Q9P227 1491 aa24.64■■□□□ 1.53
LMX1B-204ENST00000561065 SLIT1O75093 1534 aa24.63■■□□□ 1.53
LMX1B-204ENST00000561065 ANKLE2Q86XL3 938 aa24.63■■□□□ 1.53
LMX1B-204ENST00000561065 STRCP1A6NGW2 1772 aa24.63■■□□□ 1.53
LMX1B-204ENST00000561065 KDM5AP29375 1690 aaKnown RBP24.63■■□□□ 1.53
LMX1B-204ENST00000561065 NOS1P29475 1434 aa24.62■■□□□ 1.53
LMX1B-204ENST00000561065 GCC2Q8IWJ2 1684 aa24.62■■□□□ 1.53
LMX1B-204ENST00000561065 ROCK1Q13464 1354 aa24.61■■□□□ 1.53
LMX1B-204ENST00000561065 SCAF11Q99590 1463 aaKnown RBP24.6■■□□□ 1.53
LMX1B-204ENST00000561065 CPS1P31327 1500 aa24.59■■□□□ 1.53
LMX1B-204ENST00000561065 IQGAP3Q86VI3 1631 aa24.58■■□□□ 1.52
LMX1B-204ENST00000561065 ADGRB3O60242 1522 aa24.57■■□□□ 1.52
LMX1B-204ENST00000561065 RPRD2Q5VT52 1461 aaKnown RBP24.56■■□□□ 1.52
LMX1B-204ENST00000561065 E9PCH4 1651 aa24.56■■□□□ 1.52
LMX1B-204ENST00000561065 MYO5BQ9ULV0 1848 aa24.54■■□□□ 1.52
LMX1B-204ENST00000561065 RRBP1Q9P2E9 1410 aaKnown RBP24.54■■□□□ 1.52
LMX1B-204ENST00000561065 LTKP29376 864 aa24.53■■□□□ 1.52
LMX1B-204ENST00000561065 TMEM2Q9UHN6 1383 aa24.51■■□□□ 1.51
LMX1B-204ENST00000561065 IDI1Q13907 227 aa24.51■■□□□ 1.51
LMX1B-204ENST00000561065 ITGAEP38570 1179 aa24.5■■□□□ 1.51
LMX1B-204ENST00000561065 ALKQ9UM73 1620 aa24.48■■□□□ 1.51
LMX1B-204ENST00000561065 TMEM131LA2VDJ0 1609 aa24.45■■□□□ 1.51
LMX1B-204ENST00000561065 UBAP1LF5GYI3 381 aa24.45■■□□□ 1.5
LMX1B-204ENST00000561065 TXNDC2Q86VQ3 553 aa24.45■■□□□ 1.5
LMX1B-204ENST00000561065 LRRC7Q96NW7 1537 aa24.45■■□□□ 1.5
LMX1B-204ENST00000561065 XIRP1Q702N8 1843 aaKnown RBP24.44■■□□□ 1.5
LMX1B-204ENST00000561065 STAG3Q9UJ98 1225 aa24.41■■□□□ 1.5
LMX1B-204ENST00000561065 ZFYVE9O95405 1425 aa24.4■■□□□ 1.5
LMX1B-204ENST00000561065 SLC52A1Q9NWF4 448 aa24.39■■□□□ 1.5
LMX1B-204ENST00000561065 NUP155O75694 1391 aa24.39■■□□□ 1.49
LMX1B-204ENST00000561065 EID1Q9Y6B2 187 aa24.38■■□□□ 1.49
LMX1B-204ENST00000561065 SPHKAPQ2M3C7 1700 aa24.38■■□□□ 1.49
LMX1B-204ENST00000561065 NAIPQ13075 1403 aa24.37■■□□□ 1.49
LMX1B-204ENST00000561065 NWD1Q149M9 1564 aa24.34■■□□□ 1.49
LMX1B-204ENST00000561065 RIMS2Q9UQ26 1411 aa24.32■■□□□ 1.48
LMX1B-204ENST00000561065 HFM1A2PYH4 1435 aa24.28■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms