RNA–Protein interactions for RNA: ENST00000560975.5

TPM1-228, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 2,855 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-228ENST00000560975 C8orf34Q49A92 452 aa21.57■■□□□ 1.04
TPM1-228ENST00000560975 KDM2BQ8NHM5 1336 aa21.56■■□□□ 1.04
TPM1-228ENST00000560975 CFDP1Q9UEE9 299 aaPredicted RBP21.56■■□□□ 1.04
TPM1-228ENST00000560975 WDR62O43379 1518 aa21.56■■□□□ 1.04
TPM1-228ENST00000560975 PARD3Q8TEW0 1356 aa21.56■■□□□ 1.04
TPM1-228ENST00000560975 UHRF1BP1Q6BDS2 1440 aa21.54■■□□□ 1.04
TPM1-228ENST00000560975 CENPQQ7L2Z9 268 aaPredicted RBP21.54■■□□□ 1.04
TPM1-228ENST00000560975 NUP155O75694 1391 aa21.51■■□□□ 1.03
TPM1-228ENST00000560975 FAM43AQ8N2R8 423 aa21.5■■□□□ 1.03
TPM1-228ENST00000560975 PER1O15534 1290 aaPredicted RBP21.5■■□□□ 1.03
TPM1-228ENST00000560975 IQGAP2Q13576 1575 aa21.49■■□□□ 1.03
TPM1-228ENST00000560975 RSPH6AQ9H0K4 717 aa21.49■■□□□ 1.03
TPM1-228ENST00000560975 CAMSAP2Q08AD1 1489 aa21.48■■□□□ 1.03
TPM1-228ENST00000560975 KIAA0586Q9BVV6 1533 aa21.46■■□□□ 1.03
TPM1-228ENST00000560975 POGKQ9P215 609 aa21.46■■□□□ 1.03
TPM1-228ENST00000560975 E9PCH4 1651 aa21.46■■□□□ 1.03
TPM1-228ENST00000560975 ADAMTS8Q9UP79 889 aa21.45■■□□□ 1.02
TPM1-228ENST00000560975 ANKRD50Q9ULJ7 1429 aa21.45■■□□□ 1.02
TPM1-228ENST00000560975 BLMP54132 1417 aaPredicted RBP21.44■■□□□ 1.02
TPM1-228ENST00000560975 NBPF1Q3BBV0 1214 aa21.44■■□□□ 1.02
TPM1-228ENST00000560975 PANK3Q9H999 370 aa21.44■■□□□ 1.02
TPM1-228ENST00000560975 PRG4Q92954 1404 aaPredicted RBP21.44■■□□□ 1.02
TPM1-228ENST00000560975 ANKRD30AQ9BXX3 1397 aa21.44■■□□□ 1.02
TPM1-228ENST00000560975 RGL3Q3MIN7 710 aa21.43■■□□□ 1.02
TPM1-228ENST00000560975 ARXQ96QS3 562 aa21.42■■□□□ 1.02
TPM1-228ENST00000560975 DUSP27Q5VZP5 1158 aa21.4■■□□□ 1.02
TPM1-228ENST00000560975 SLKQ9H2G2 1235 aaPredicted RBP21.4■■□□□ 1.02
TPM1-228ENST00000560975 NUP153P49790 1475 aaKnown RBP21.39■■□□□ 1.02
TPM1-228ENST00000560975 ARHGEF12Q9NZN5 1544 aa21.39■■□□□ 1.01
TPM1-228ENST00000560975 ZMYM4Q5VZL5 1548 aa21.38■■□□□ 1.01
TPM1-228ENST00000560975 PLEKHH1Q9ULM0 1364 aa21.38■■□□□ 1.01
TPM1-228ENST00000560975 RRAGDQ9NQL2 400 aaPredicted RBP21.38■■□□□ 1.01
TPM1-228ENST00000560975 ADGBQ8N7X0 1667 aa21.37■■□□□ 1.01
TPM1-228ENST00000560975 DISP3Q9P2K9 1392 aa21.37■■□□□ 1.01
TPM1-228ENST00000560975 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.37■■□□□ 1.01
TPM1-228ENST00000560975 WDR43Q15061 677 aaKnown RBP eCLIP21.35■■□□□ 1.01
TPM1-228ENST00000560975 ADGRL2O95490 1459 aa21.34■■□□□ 1.01
TPM1-228ENST00000560975 GOLGA2Q08379 1002 aa21.34■■□□□ 1.01
TPM1-228ENST00000560975 GPATCH8Q9UKJ3 1502 aaKnown RBP21.34■■□□□ 1.01
TPM1-228ENST00000560975 SEC24BO95487 1268 aa21.34■■□□□ 1.01
TPM1-228ENST00000560975 PDS5BQ9NTI5 1447 aa21.34■■□□□ 1.01
TPM1-228ENST00000560975 PLEKHH2Q8IVE3 1493 aa21.33■■□□□ 1.01
TPM1-228ENST00000560975 ZNF608Q9ULD9 1512 aaPredicted RBP21.32■■□□□ 1
TPM1-228ENST00000560975 TROQ12816 1431 aaPredicted RBP21.31■■□□□ 1
TPM1-228ENST00000560975 USP19O94966 1318 aa21.31■■□□□ 1
TPM1-228ENST00000560975 BCAR3O75815 825 aa21.3■■□□□ 1
TPM1-228ENST00000560975 IGHDP01880 384 aa21.3■■□□□ 1
TPM1-228ENST00000560975 CCDC146Q8IYE0 955 aa21.3■■□□□ 1
TPM1-228ENST00000560975 TESK2Q96S53 571 aa21.3■■□□□ 1
TPM1-228ENST00000560975 INSRP06213 1382 aa21.28■■□□□ 1
TPM1-228ENST00000560975 PRAG1Q86YV5 1406 aa21.28■■□□□ 1
TPM1-228ENST00000560975 BECN1Q14457 450 aa21.27■■□□□ 1
TPM1-228ENST00000560975 TSPY4P0CV99 314 aa21.26■□□□□ 0.99
TPM1-228ENST00000560975 TSPY10P0CW01 314 aa21.26■□□□□ 0.99
TPM1-228ENST00000560975 COL17A1Q9UMD9 1497 aaPredicted RBP21.26■□□□□ 0.99
TPM1-228ENST00000560975 RAPGEF6Q8TEU7 1601 aa21.26■□□□□ 0.99
TPM1-228ENST00000560975 SPINK5Q9NQ38 1064 aaPredicted RBP21.26■□□□□ 0.99
TPM1-228ENST00000560975 CEP170Q5SW79 1584 aa21.26■□□□□ 0.99
TPM1-228ENST00000560975 PPP2R1AP30153 589 aa21.26■□□□□ 0.99
TPM1-228ENST00000560975 C9orf84Q5VXU9 1444 aa21.25■□□□□ 0.99
TPM1-228ENST00000560975 TMF1P82094 1093 aa21.25■□□□□ 0.99
TPM1-228ENST00000560975 SLFN5Q08AF3 891 aa21.25■□□□□ 0.99
TPM1-228ENST00000560975 DISP1Q96F81 1524 aa21.25■□□□□ 0.99
TPM1-228ENST00000560975 L1TD1Q5T7N2 865 aaKnown RBP21.25■□□□□ 0.99
TPM1-228ENST00000560975 TARBP1Q13395 1621 aaKnown RBP21.25■□□□□ 0.99
TPM1-228ENST00000560975 CROCC2H7BZ55 1655 aa21.24■□□□□ 0.99
TPM1-228ENST00000560975 PBRM1Q86U86 1689 aa21.24■□□□□ 0.99
TPM1-228ENST00000560975 ERBINQ96RT1 1412 aa21.24■□□□□ 0.99
TPM1-228ENST00000560975 ZNF521Q96K83 1311 aa21.23■□□□□ 0.99
TPM1-228ENST00000560975 KDM5DQ9BY66 1539 aa21.23■□□□□ 0.99
TPM1-228ENST00000560975 SPRYD3Q8NCJ5 442 aa21.23■□□□□ 0.99
TPM1-228ENST00000560975 ITSN2Q9NZM3 1697 aa21.23■□□□□ 0.99
TPM1-228ENST00000560975 NAP1L5Q96NT1 182 aaPredicted RBP21.23■□□□□ 0.99
TPM1-228ENST00000560975 KIAA0556O60303 1618 aa21.23■□□□□ 0.99
TPM1-228ENST00000560975 ADAMTS12P58397 1594 aa21.23■□□□□ 0.99
TPM1-228ENST00000560975 KNSTRNQ9Y448 316 aa21.22■□□□□ 0.99
TPM1-228ENST00000560975 HNRNPMP52272 730 aaKnown RBP eCLIP21.22■□□□□ 0.99
TPM1-228ENST00000560975 GZF1Q9H116 711 aaPredicted RBP21.22■□□□□ 0.99
TPM1-228ENST00000560975 TRPM1Q7Z4N2 1603 aa21.22■□□□□ 0.99
TPM1-228ENST00000560975 CCDC144AA2RUR9 1427 aa21.21■□□□□ 0.99
TPM1-228ENST00000560975 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.2■□□□□ 0.989e-7■■■□□ 19
TPM1-228ENST00000560975 APAF1O14727 1248 aa21.19■□□□□ 0.98
TPM1-228ENST00000560975 PLB1Q6P1J6 1458 aa21.19■□□□□ 0.98
TPM1-228ENST00000560975 EIF3AQ14152 1382 aaKnown RBP21.19■□□□□ 0.98
TPM1-228ENST00000560975 XRCC6P12956 609 aaKnown RBP eCLIP21.18■□□□□ 0.98
TPM1-228ENST00000560975 COG6Q9Y2V7 657 aa21.18■□□□□ 0.98
TPM1-228ENST00000560975 CANXP27824 592 aaKnown RBP21.18■□□□□ 0.98
TPM1-228ENST00000560975 PANK1Q8TE04 598 aa21.18■□□□□ 0.98
TPM1-228ENST00000560975 PANK2Q9BZ23 570 aa21.18■□□□□ 0.98
TPM1-228ENST00000560975 PKNOX2Q96KN3 472 aa21.16■□□□□ 0.98
TPM1-228ENST00000560975 ANTXR1Q9H6X2 564 aa21.16■□□□□ 0.98
TPM1-228ENST00000560975 GOLGA6L3A6NEY3 463 aa21.15■□□□□ 0.98
TPM1-228ENST00000560975 PNNQ9H307 717 aaKnown RBP21.15■□□□□ 0.98
TPM1-228ENST00000560975 DMRT2Q9Y5R5 561 aa21.15■□□□□ 0.98
TPM1-228ENST00000560975 GPRASP1Q5JY77 1395 aa21.15■□□□□ 0.98
TPM1-228ENST00000560975 MAPK8IP3Q9UPT6 1336 aa21.13■□□□□ 0.97
TPM1-228ENST00000560975 CLUAP1Q96AJ1 413 aa21.13■□□□□ 0.97
TPM1-228ENST00000560975 TBC1D2Q9BYX2 928 aa21.13■□□□□ 0.97
TPM1-228ENST00000560975 A2MP01023 1474 aa21.13■□□□□ 0.97
TPM1-228ENST00000560975 MAGI2Q86UL8 1455 aa21.13■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms