RNA–Protein interactions for RNA: ENST00000560959.5

TPM1-226, Transcript of tropomyosin 1, humanhuman

TSL 2 BASIC

Gene TPM1, Length 925 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-226ENST00000560959 CEP162Q5TB80 1403 aa29.93■■■□□ 2.38
TPM1-226ENST00000560959 TIAM1Q13009 1591 aa29.93■■■□□ 2.38
TPM1-226ENST00000560959 KIF3BO15066 747 aa29.91■■■□□ 2.38
TPM1-226ENST00000560959 FBXO31Q5XUX0 539 aaPredicted RBP29.91■■■□□ 2.38
TPM1-226ENST00000560959 CPS1P31327 1500 aa29.91■■■□□ 2.38
TPM1-226ENST00000560959 EHBP1L1Q8N3D4 1523 aa29.9■■■□□ 2.38
TPM1-226ENST00000560959 PZPP20742 1482 aa29.89■■■□□ 2.38
TPM1-226ENST00000560959 ANKLE2Q86XL3 938 aa29.89■■■□□ 2.38
TPM1-226ENST00000560959 THEMISQ8N1K5 641 aaPredicted RBP29.88■■■□□ 2.37
TPM1-226ENST00000560959 SHANK2Q9UPX8 1470 aa29.87■■■□□ 2.37
TPM1-226ENST00000560959 WASHC2CQ9Y4E1 1318 aa29.87■■■□□ 2.37
TPM1-226ENST00000560959 HSPA1LP34931 641 aa29.85■■■□□ 2.37
TPM1-226ENST00000560959 KDM5DQ9BY66 1539 aa29.85■■■□□ 2.37
TPM1-226ENST00000560959 MIA2Q96PC5 1412 aa29.84■■■□□ 2.37
TPM1-226ENST00000560959 CCDC141Q6ZP82 1450 aa29.84■■■□□ 2.37
TPM1-226ENST00000560959 NEURL4Q96JN8 1562 aa29.83■■■□□ 2.37
TPM1-226ENST00000560959 PIP4K2BP78356 416 aa29.82■■■□□ 2.36
TPM1-226ENST00000560959 NLRP1Q9C000 1473 aa29.81■■■□□ 2.36
TPM1-226ENST00000560959 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.8■■■□□ 2.36
TPM1-226ENST00000560959 SCAF1Q9H7N4 1312 aaKnown RBP29.8■■■□□ 2.36
TPM1-226ENST00000560959 MED14O60244 1454 aa29.79■■■□□ 2.36
TPM1-226ENST00000560959 POLR1AO95602 1720 aaPredicted RBP29.79■■■□□ 2.36
TPM1-226ENST00000560959 TSPY4P0CV99 314 aa29.76■■■□□ 2.35
TPM1-226ENST00000560959 TSPY10P0CW01 314 aa29.76■■■□□ 2.35
TPM1-226ENST00000560959 CAMSAP2Q08AD1 1489 aa29.74■■■□□ 2.35
TPM1-226ENST00000560959 NCOA2Q15596 1464 aa29.74■■■□□ 2.35
TPM1-226ENST00000560959 UGGT1Q9NYU2 1555 aa29.73■■■□□ 2.35
TPM1-226ENST00000560959 NPHP4O75161 1426 aaPredicted RBP29.73■■■□□ 2.35
TPM1-226ENST00000560959 VWDEQ8N2E2 1590 aa29.73■■■□□ 2.35
TPM1-226ENST00000560959 DEPDC5O75140 1603 aa29.72■■■□□ 2.35
TPM1-226ENST00000560959 MED1Q15648 1581 aaPredicted RBP29.72■■■□□ 2.35
TPM1-226ENST00000560959 ARHGEF5Q12774 1597 aa29.69■■■□□ 2.34
TPM1-226ENST00000560959 ALKQ9UM73 1620 aa29.6■■■□□ 2.33
TPM1-226ENST00000560959 ABCC3O15438 1527 aa29.58■■■□□ 2.33
TPM1-226ENST00000560959 IQGAP1P46940 1657 aa29.58■■■□□ 2.33
TPM1-226ENST00000560959 PHF23Q9BUL5 403 aaPredicted RBP29.58■■■□□ 2.33
TPM1-226ENST00000560959 RNF17Q9BXT8 1623 aaKnown RBP29.58■■■□□ 2.33
TPM1-226ENST00000560959 LRRC7Q96NW7 1537 aa29.57■■■□□ 2.32
TPM1-226ENST00000560959 ZC3H13Q5T200 1668 aaKnown RBP29.55■■■□□ 2.32
TPM1-226ENST00000560959 MAST1Q9Y2H9 1570 aa29.55■■■□□ 2.32
TPM1-226ENST00000560959 ERVK-7P63135 1459 aa29.55■■■□□ 2.32
TPM1-226ENST00000560959 EIF2AK4Q9P2K8 1649 aaKnown RBP29.5■■■□□ 2.31
TPM1-226ENST00000560959 LRRC9Q6ZRR7 1453 aa29.49■■■□□ 2.31
TPM1-226ENST00000560959 SYNMO15061 1565 aa29.49■■■□□ 2.31
TPM1-226ENST00000560959 STRCP1A6NGW2 1772 aa29.47■■■□□ 2.31
TPM1-226ENST00000560959 SCAF11Q99590 1463 aaKnown RBP29.46■■■□□ 2.31
TPM1-226ENST00000560959 ARHGAP31Q2M1Z3 1444 aa29.45■■■□□ 2.3
TPM1-226ENST00000560959 LTKP29376 864 aa29.44■■■□□ 2.3
TPM1-226ENST00000560959 TXNDC2Q86VQ3 553 aa29.44■■■□□ 2.3
TPM1-226ENST00000560959 ARHGAP23Q9P227 1491 aa29.43■■■□□ 2.3
TPM1-226ENST00000560959 MROH1Q8NDA8 1641 aa29.43■■■□□ 2.3
TPM1-226ENST00000560959 SLIT1O75093 1534 aa29.42■■■□□ 2.3
TPM1-226ENST00000560959 MYOM3Q5VTT5 1437 aa29.42■■■□□ 2.3
TPM1-226ENST00000560959 DUOX2Q9NRD8 1548 aa29.41■■■□□ 2.3
TPM1-226ENST00000560959 UBR1Q8IWV7 1749 aa29.41■■■□□ 2.3
TPM1-226ENST00000560959 VPS8Q8N3P4 1428 aa29.4■■■□□ 2.3
TPM1-226ENST00000560959 EID1Q9Y6B2 187 aa29.4■■■□□ 2.3
TPM1-226ENST00000560959 MAP3K1Q13233 1512 aa29.39■■■□□ 2.3
TPM1-226ENST00000560959 KANK4Q5T7N3 995 aaPredicted RBP29.36■■■□□ 2.29
TPM1-226ENST00000560959 SENP3Q9H4L4 574 aaPredicted RBP29.34■■■□□ 2.29
TPM1-226ENST00000560959 RGS17Q9UGC6 210 aaPredicted RBP29.33■■■□□ 2.29
TPM1-226ENST00000560959 FAM135BQ49AJ0 1406 aa29.33■■■□□ 2.29
TPM1-226ENST00000560959 ERBINQ96RT1 1412 aa29.33■■■□□ 2.29
TPM1-226ENST00000560959 CEP152O94986 1710 aa29.32■■■□□ 2.28
TPM1-226ENST00000560959 PRDM15P57071 1507 aaPredicted RBP29.31■■■□□ 2.28
TPM1-226ENST00000560959 KIF15Q9NS87 1388 aa29.31■■■□□ 2.28
TPM1-226ENST00000560959 TMEM2Q9UHN6 1383 aa29.31■■■□□ 2.28
TPM1-226ENST00000560959 CFAP65Q6ZU64 1925 aaKnown RBP29.28■■■□□ 2.28
TPM1-226ENST00000560959 RRP7BPQ9NSQ0 103 aa29.27■■■□□ 2.28
TPM1-226ENST00000560959 STAG3Q9UJ98 1225 aa29.26■■■□□ 2.27
TPM1-226ENST00000560959 KCNA6P17658 529 aa29.25■■■□□ 2.27
TPM1-226ENST00000560959 ABCC5O15440 1437 aa29.25■■■□□ 2.27
TPM1-226ENST00000560959 KANK1Q14678 1352 aa29.25■■■□□ 2.27
TPM1-226ENST00000560959 IDI1Q13907 227 aa29.22■■■□□ 2.27
TPM1-226ENST00000560959 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.22■■■□□ 2.271e-6■■■□□ 19
TPM1-226ENST00000560959 XIRP1Q702N8 1843 aaKnown RBP29.22■■■□□ 2.27
TPM1-226ENST00000560959 TMEM94Q12767 1356 aa29.21■■■□□ 2.27
TPM1-226ENST00000560959 KDM5AP29375 1690 aaKnown RBP29.21■■■□□ 2.27
TPM1-226ENST00000560959 PIK3C2BO00750 1634 aa29.2■■■□□ 2.26
TPM1-226ENST00000560959 LMTK2Q8IWU2 1503 aa29.19■■■□□ 2.26
TPM1-226ENST00000560959 EFCAB6Q5THR3 1501 aa29.18■■■□□ 2.26
TPM1-226ENST00000560959 PROSER2Q86WR7 435 aaPredicted RBP29.16■■■□□ 2.26
TPM1-226ENST00000560959 TET3O43151 1660 aa29.15■■■□□ 2.26
TPM1-226ENST00000560959 DAPK1P53355 1430 aa29.14■■■□□ 2.26
TPM1-226ENST00000560959 LOC105371045A0A1W2PR82 267 aa29.14■■■□□ 2.26
TPM1-226ENST00000560959 SLC52A1Q9NWF4 448 aa29.14■■■□□ 2.26
TPM1-226ENST00000560959 SLC26A8Q96RN1 970 aa29.13■■■□□ 2.25
TPM1-226ENST00000560959 ANKRD30AQ9BXX3 1397 aa29.12■■■□□ 2.25
TPM1-226ENST00000560959 CROCC2H7BZ55 1655 aa29.12■■■□□ 2.25
TPM1-226ENST00000560959 NOS1P29475 1434 aa29.11■■■□□ 2.25
TPM1-226ENST00000560959 POTEAQ6S8J7 498 aa29.11■■■□□ 2.25
TPM1-226ENST00000560959 PTPN23Q9H3S7 1636 aa29.1■■■□□ 2.25
TPM1-226ENST00000560959 NKTRP30414 1462 aaKnown RBP29.09■■■□□ 2.25
TPM1-226ENST00000560959 APLP2Q06481 763 aa29.07■■■□□ 2.24
TPM1-226ENST00000560959 FGD6Q6ZV73 1430 aa29.05■■■□□ 2.24
TPM1-226ENST00000560959 MSH6P52701 1360 aa29.05■■■□□ 2.24
TPM1-226ENST00000560959 SLAIN2Q9P270 581 aa29.05■■■□□ 2.24
TPM1-226ENST00000560959 ROBO1Q9Y6N7 1651 aa29.05■■■□□ 2.24
TPM1-226ENST00000560959 RBM33Q96EV2 1170 aaKnown RBP29.03■■■□□ 2.24
TPM1-226ENST00000560959 CHIC2Q9UKJ5 165 aa29.03■■■□□ 2.24
Retrieved 100 of 20,778 RNA–protein pairs in 139.8 ms