RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 POLR1AO95602 1720 aaPredicted RBP22.2■■□□□ 1.14
LDLR-213ENST00000560502 RSPH4AQ5TD94 716 aa22.2■■□□□ 1.14
LDLR-213ENST00000560502 ZNF335Q9H4Z2 1342 aaPredicted RBP22.2■■□□□ 1.14
LDLR-213ENST00000560502 VPS8Q8N3P4 1428 aa22.18■■□□□ 1.14
LDLR-213ENST00000560502 NEURL4Q96JN8 1562 aa22.17■■□□□ 1.14
LDLR-213ENST00000560502 LRRC9Q6ZRR7 1453 aa22.17■■□□□ 1.14
LDLR-213ENST00000560502 KIF3BO15066 747 aa22.17■■□□□ 1.14
LDLR-213ENST00000560502 SPATA31D1Q6ZQQ2 1576 aa22.16■■□□□ 1.14
LDLR-213ENST00000560502 MAST1Q9Y2H9 1570 aa22.16■■□□□ 1.14
LDLR-213ENST00000560502 TNRQ92752 1358 aa22.16■■□□□ 1.14
LDLR-213ENST00000560502 RNF17Q9BXT8 1623 aaKnown RBP22.16■■□□□ 1.14
LDLR-213ENST00000560502 DISP3Q9P2K9 1392 aa22.15■■□□□ 1.14
LDLR-213ENST00000560502 FBXO31Q5XUX0 539 aaPredicted RBP22.13■■□□□ 1.13
LDLR-213ENST00000560502 MAP3K1Q13233 1512 aa22.12■■□□□ 1.13
LDLR-213ENST00000560502 ZC3H13Q5T200 1668 aaKnown RBP22.11■■□□□ 1.13
LDLR-213ENST00000560502 EIF2AK4Q9P2K8 1649 aaKnown RBP22.11■■□□□ 1.13
LDLR-213ENST00000560502 NLRP1Q9C000 1473 aa22.1■■□□□ 1.13
LDLR-213ENST00000560502 ILDR2Q71H61 639 aa22.09■■□□□ 1.13
LDLR-213ENST00000560502 ABCC3O15438 1527 aa22.09■■□□□ 1.13
LDLR-213ENST00000560502 MROH1Q8NDA8 1641 aa22.09■■□□□ 1.13
LDLR-213ENST00000560502 WASHC2CQ9Y4E1 1318 aa22.08■■□□□ 1.13
LDLR-213ENST00000560502 MIA2Q96PC5 1412 aa22.08■■□□□ 1.13
LDLR-213ENST00000560502 TSPY4P0CV99 314 aa22.07■■□□□ 1.12
LDLR-213ENST00000560502 TSPY10P0CW01 314 aa22.07■■□□□ 1.12
LDLR-213ENST00000560502 DEPDC5O75140 1603 aa22.06■■□□□ 1.12
LDLR-213ENST00000560502 CPS1P31327 1500 aa22.06■■□□□ 1.12
LDLR-213ENST00000560502 MYOM3Q5VTT5 1437 aa22.06■■□□□ 1.12
LDLR-213ENST00000560502 UGGT1Q9NYU2 1555 aa22.05■■□□□ 1.12
LDLR-213ENST00000560502 UBAP1LF5GYI3 381 aa22.05■■□□□ 1.12
LDLR-213ENST00000560502 VWDEQ8N2E2 1590 aa22.04■■□□□ 1.12
LDLR-213ENST00000560502 MED14O60244 1454 aa22.03■■□□□ 1.12
LDLR-213ENST00000560502 LOC105371045A0A1W2PR82 267 aa22.03■■□□□ 1.12
LDLR-213ENST00000560502 KANK4Q5T7N3 995 aaPredicted RBP22.03■■□□□ 1.12
LDLR-213ENST00000560502 SHANK2Q9UPX8 1470 aa22.03■■□□□ 1.12
LDLR-213ENST00000560502 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.02■■□□□ 1.12
LDLR-213ENST00000560502 CEP152O94986 1710 aa22.02■■□□□ 1.12
LDLR-213ENST00000560502 CROCC2H7BZ55 1655 aa22.01■■□□□ 1.11
LDLR-213ENST00000560502 ERVK-7P63135 1459 aa22■■□□□ 1.11
LDLR-213ENST00000560502 IQGAP1P46940 1657 aa21.99■■□□□ 1.11
LDLR-213ENST00000560502 THEMISQ8N1K5 641 aaPredicted RBP21.99■■□□□ 1.11
LDLR-213ENST00000560502 DUOX2Q9NRD8 1548 aa21.99■■□□□ 1.11
LDLR-213ENST00000560502 NPHP4O75161 1426 aaPredicted RBP21.98■■□□□ 1.11
LDLR-213ENST00000560502 ANKLE2Q86XL3 938 aa21.98■■□□□ 1.11
LDLR-213ENST00000560502 SOCS7O14512 581 aa21.97■■□□□ 1.11
LDLR-213ENST00000560502 PRDM15P57071 1507 aaPredicted RBP21.96■■□□□ 1.11
LDLR-213ENST00000560502 UBR1Q8IWV7 1749 aa21.95■■□□□ 1.1
LDLR-213ENST00000560502 CFAP65Q6ZU64 1925 aaKnown RBP21.94■■□□□ 1.1
LDLR-213ENST00000560502 STRCP1A6NGW2 1772 aa21.94■■□□□ 1.1
LDLR-213ENST00000560502 PTPN23Q9H3S7 1636 aa21.93■■□□□ 1.1
LDLR-213ENST00000560502 ALKQ9UM73 1620 aa21.93■■□□□ 1.1
LDLR-213ENST00000560502 ABCC5O15440 1437 aa21.91■■□□□ 1.1
LDLR-213ENST00000560502 ERBINQ96RT1 1412 aa21.9■■□□□ 1.1
LDLR-213ENST00000560502 ARHGAP31Q2M1Z3 1444 aa21.89■■□□□ 1.1
LDLR-213ENST00000560502 KIF15Q9NS87 1388 aa21.89■■□□□ 1.1
LDLR-213ENST00000560502 SYNMO15061 1565 aa21.89■■□□□ 1.09
LDLR-213ENST00000560502 TOM1O60784 492 aa21.87■■□□□ 1.09
LDLR-213ENST00000560502 ARHGAP23Q9P227 1491 aa21.87■■□□□ 1.09
LDLR-213ENST00000560502 SLIT1O75093 1534 aa21.86■■□□□ 1.09
LDLR-213ENST00000560502 DAPK1P53355 1430 aa21.86■■□□□ 1.09
LDLR-213ENST00000560502 HSPA1LP34931 641 aa21.85■■□□□ 1.09
LDLR-213ENST00000560502 MED1Q15648 1581 aaPredicted RBP21.85■■□□□ 1.09
LDLR-213ENST00000560502 LRRC7Q96NW7 1537 aa21.85■■□□□ 1.09
LDLR-213ENST00000560502 SCAF11Q99590 1463 aaKnown RBP21.84■■□□□ 1.09
LDLR-213ENST00000560502 FGD6Q6ZV73 1430 aa21.83■■□□□ 1.09
LDLR-213ENST00000560502 PIP4K2BP78356 416 aa21.83■■□□□ 1.09
LDLR-213ENST00000560502 PIK3C2BO00750 1634 aa21.82■■□□□ 1.08
LDLR-213ENST00000560502 SCAF1Q9H7N4 1312 aaKnown RBP21.81■■□□□ 1.08
LDLR-213ENST00000560502 KDM5AP29375 1690 aaKnown RBP21.81■■□□□ 1.08
LDLR-213ENST00000560502 LMTK2Q8IWU2 1503 aa21.8■■□□□ 1.08
LDLR-213ENST00000560502 RRP7BPQ9NSQ0 103 aa21.79■■□□□ 1.08
LDLR-213ENST00000560502 XIRP1Q702N8 1843 aaKnown RBP21.78■■□□□ 1.08
LDLR-213ENST00000560502 LTKP29376 864 aa21.77■■□□□ 1.08
LDLR-213ENST00000560502 APLP2Q06481 763 aa21.74■■□□□ 1.07
LDLR-213ENST00000560502 KANK1Q14678 1352 aa21.74■■□□□ 1.07
LDLR-213ENST00000560502 ANKRD30AQ9BXX3 1397 aa21.74■■□□□ 1.07
LDLR-213ENST00000560502 ADGRL2O95490 1459 aa21.73■■□□□ 1.07
LDLR-213ENST00000560502 EFCAB6Q5THR3 1501 aa21.73■■□□□ 1.07
LDLR-213ENST00000560502 TMEM2Q9UHN6 1383 aa21.73■■□□□ 1.07
LDLR-213ENST00000560502 TXNDC2Q86VQ3 553 aa21.72■■□□□ 1.07
LDLR-213ENST00000560502 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.72■■□□□ 1.07
LDLR-213ENST00000560502 NOS1P29475 1434 aa21.7■■□□□ 1.06
LDLR-213ENST00000560502 ADGRB3O60242 1522 aa21.68■■□□□ 1.06
LDLR-213ENST00000560502 TET3O43151 1660 aa21.67■■□□□ 1.06
LDLR-213ENST00000560502 CHIC2Q9UKJ5 165 aa21.67■■□□□ 1.06
LDLR-213ENST00000560502 EID1Q9Y6B2 187 aa21.67■■□□□ 1.06
LDLR-213ENST00000560502 IDI1Q13907 227 aa21.65■■□□□ 1.06
LDLR-213ENST00000560502 NWD1Q149M9 1564 aa21.62■■□□□ 1.05
LDLR-213ENST00000560502 RPRD2Q5VT52 1461 aaKnown RBP21.62■■□□□ 1.05
LDLR-213ENST00000560502 STAG3Q9UJ98 1225 aa21.61■■□□□ 1.05
LDLR-213ENST00000560502 MYO5BQ9ULV0 1848 aa21.6■■□□□ 1.05
LDLR-213ENST00000560502 ANKRD50Q9ULJ7 1429 aa21.6■■□□□ 1.05
LDLR-213ENST00000560502 GCC2Q8IWJ2 1684 aa21.59■■□□□ 1.05
LDLR-213ENST00000560502 UNC13BO14795 1591 aa21.58■■□□□ 1.05
LDLR-213ENST00000560502 TMEM94Q12767 1356 aa21.57■■□□□ 1.04
LDLR-213ENST00000560502 NKTRP30414 1462 aaKnown RBP21.57■■□□□ 1.04
LDLR-213ENST00000560502 FAM135BQ49AJ0 1406 aa21.56■■□□□ 1.04
LDLR-213ENST00000560502 KCNA6P17658 529 aa21.56■■□□□ 1.04
LDLR-213ENST00000560502 SLC52A1Q9NWF4 448 aa21.56■■□□□ 1.04
LDLR-213ENST00000560502 ZFYVE9O95405 1425 aa21.55■■□□□ 1.04
LDLR-213ENST00000560502 SENP3Q9H4L4 574 aaPredicted RBP21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms