RNA–Protein interactions for RNA: ENST00000560424.1

SMAD3-215, Transcript of SMAD family member 3, humanhuman

TSL 3

Gene SMAD3, Length 775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-215ENST00000560424 GPATCH8Q9UKJ3 1502 aaKnown RBP15.12■□□□□ 0.01
SMAD3-215ENST00000560424 THEMISQ8N1K5 641 aaPredicted RBP15.12■□□□□ 0.01
SMAD3-215ENST00000560424 CCNB3Q8WWL7 1395 aa15.11■□□□□ 0.01
SMAD3-215ENST00000560424 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.11■□□□□ 0.01
SMAD3-215ENST00000560424 NPHP4O75161 1426 aaPredicted RBP15.1■□□□□ 0.01
SMAD3-215ENST00000560424 VWDEQ8N2E2 1590 aa15.1■□□□□ 0.01
SMAD3-215ENST00000560424 FAM135AQ9P2D6 1515 aa15.09■□□□□ 0.01
SMAD3-215ENST00000560424 FYCO1Q9BQS8 1478 aa15.08■□□□□ 0.01
SMAD3-215ENST00000560424 FBXO31Q5XUX0 539 aaPredicted RBP15.08■□□□□ 0
SMAD3-215ENST00000560424 UGGT1Q9NYU2 1555 aa15.07■□□□□ 0
SMAD3-215ENST00000560424 RNF17Q9BXT8 1623 aaKnown RBP15.07■□□□□ 0
SMAD3-215ENST00000560424 WASHC2CQ9Y4E1 1318 aa15.07■□□□□ 0
SMAD3-215ENST00000560424 PZPP20742 1482 aa15.07■□□□□ 0
SMAD3-215ENST00000560424 KDM5DQ9BY66 1539 aa15.07■□□□□ 0
SMAD3-215ENST00000560424 KIF3BO15066 747 aa15.06■□□□□ 0
SMAD3-215ENST00000560424 NLRP1Q9C000 1473 aa15.06■□□□□ 0
SMAD3-215ENST00000560424 DEPDC5O75140 1603 aa15.06■□□□□ 0
SMAD3-215ENST00000560424 ALKQ9UM73 1620 aa15.06■□□□□ 0
SMAD3-215ENST00000560424 IQGAP1P46940 1657 aa15.06■□□□□ 0
SMAD3-215ENST00000560424 DHX29Q7Z478 1369 aaKnown RBP15.05■□□□□ -0
SMAD3-215ENST00000560424 MED14O60244 1454 aa15.05■□□□□ -0
SMAD3-215ENST00000560424 SYNMO15061 1565 aa15.05■□□□□ -0
SMAD3-215ENST00000560424 MTUS2Q5JR59 1369 aa15.04■□□□□ -0
SMAD3-215ENST00000560424 RTEL1-TNFRSF6BF6WH68 1400 aa15.03■□□□□ -0
SMAD3-215ENST00000560424 MIA2Q96PC5 1412 aa15.03■□□□□ -0
SMAD3-215ENST00000560424 LRRC7Q96NW7 1537 aa15.02■□□□□ -0
SMAD3-215ENST00000560424 RGS17Q9UGC6 210 aaPredicted RBP15□□□□□ -0.01
SMAD3-215ENST00000560424 CHIC1Q5VXU3 224 aa14.99□□□□□ -0.01
SMAD3-215ENST00000560424 ZNF644Q9H582 1327 aaPredicted RBP14.98□□□□□ -0.01
SMAD3-215ENST00000560424 STRCP1A6NGW2 1772 aa14.98□□□□□ -0.01
SMAD3-215ENST00000560424 MBD5Q9P267 1494 aa14.96□□□□□ -0.01
SMAD3-215ENST00000560424 TIAM1Q13009 1591 aa14.95□□□□□ -0.02
SMAD3-215ENST00000560424 CCDC141Q6ZP82 1450 aa14.95□□□□□ -0.02
SMAD3-215ENST00000560424 POTEAQ6S8J7 498 aa14.94□□□□□ -0.02
SMAD3-215ENST00000560424 RSPH4AQ5TD94 716 aa14.93□□□□□ -0.02
SMAD3-215ENST00000560424 EHBP1L1Q8N3D4 1523 aa14.92□□□□□ -0.02
SMAD3-215ENST00000560424 SCAF11Q99590 1463 aaKnown RBP14.91□□□□□ -0.02
SMAD3-215ENST00000560424 TSPY4P0CV99 314 aa14.91□□□□□ -0.02
SMAD3-215ENST00000560424 TSPY10P0CW01 314 aa14.91□□□□□ -0.02
SMAD3-215ENST00000560424 ZC3H13Q5T200 1668 aaKnown RBP14.9□□□□□ -0.02
SMAD3-215ENST00000560424 EID1Q9Y6B2 187 aa14.9□□□□□ -0.02
SMAD3-215ENST00000560424 FAM135BQ49AJ0 1406 aa14.9□□□□□ -0.02
SMAD3-215ENST00000560424 TXNDC2Q86VQ3 553 aa14.89□□□□□ -0.03
SMAD3-215ENST00000560424 ERVK-7P63135 1459 aa14.88□□□□□ -0.03
SMAD3-215ENST00000560424 CAMSAP2Q08AD1 1489 aa14.88□□□□□ -0.03
SMAD3-215ENST00000560424 SETD1AO15047 1707 aaKnown RBP14.87□□□□□ -0.03
SMAD3-215ENST00000560424 CEP162Q5TB80 1403 aa14.87□□□□□ -0.03
SMAD3-215ENST00000560424 ABCC3O15438 1527 aa14.87□□□□□ -0.03
SMAD3-215ENST00000560424 UBR1Q8IWV7 1749 aa14.86□□□□□ -0.03
SMAD3-215ENST00000560424 XIRP1Q702N8 1843 aaKnown RBP14.85□□□□□ -0.03
SMAD3-215ENST00000560424 ROBO1Q9Y6N7 1651 aa14.85□□□□□ -0.03
SMAD3-215ENST00000560424 STAG3Q9UJ98 1225 aa14.85□□□□□ -0.03
SMAD3-215ENST00000560424 LRRC9Q6ZRR7 1453 aa14.83□□□□□ -0.03
SMAD3-215ENST00000560424 LTKP29376 864 aa14.83□□□□□ -0.04
SMAD3-215ENST00000560424 CFAP65Q6ZU64 1925 aaKnown RBP14.83□□□□□ -0.04
SMAD3-215ENST00000560424 TMEM94Q12767 1356 aa14.83□□□□□ -0.04
SMAD3-215ENST00000560424 SLIT1O75093 1534 aa14.82□□□□□ -0.04
SMAD3-215ENST00000560424 MEX3CQ5U5Q3 659 aaKnown RBP14.81□□□□□ -0.04
SMAD3-215ENST00000560424 PROSER2Q86WR7 435 aaPredicted RBP14.81□□□□□ -0.04
SMAD3-215ENST00000560424 ARHGAP23Q9P227 1491 aa14.81□□□□□ -0.04
SMAD3-215ENST00000560424 ARHGEF5Q12774 1597 aa14.81□□□□□ -0.04
SMAD3-215ENST00000560424 EIF2AK4Q9P2K8 1649 aaKnown RBP14.81□□□□□ -0.04
SMAD3-215ENST00000560424 CEP152O94986 1710 aa14.8□□□□□ -0.04
SMAD3-215ENST00000560424 JCADQ9P266 1359 aa14.8□□□□□ -0.04
SMAD3-215ENST00000560424 NCOA2Q15596 1464 aa14.8□□□□□ -0.04
SMAD3-215ENST00000560424 KCNA6P17658 529 aa14.79□□□□□ -0.04
SMAD3-215ENST00000560424 MSH6P52701 1360 aa14.79□□□□□ -0.04
SMAD3-215ENST00000560424 PHLPP1O60346 1717 aa14.78□□□□□ -0.04
SMAD3-215ENST00000560424 ZNF772Q68DY9 489 aaPredicted RBP14.77□□□□□ -0.05
SMAD3-215ENST00000560424 UPF1Q92900 1129 aaKnown RBP eCLIP14.77□□□□□ -0.05
SMAD3-215ENST00000560424 TRIM52Q96A61 297 aa14.77□□□□□ -0.05
SMAD3-215ENST00000560424 RBM33Q96EV2 1170 aaKnown RBP14.77□□□□□ -0.05
SMAD3-215ENST00000560424 BCANQ96GW7 911 aa14.77□□□□□ -0.05
SMAD3-215ENST00000560424 TMEM2Q9UHN6 1383 aa14.76□□□□□ -0.05
SMAD3-215ENST00000560424 SLC26A8Q96RN1 970 aa14.75□□□□□ -0.05
SMAD3-215ENST00000560424 MAP3K1Q13233 1512 aa14.75□□□□□ -0.05
SMAD3-215ENST00000560424 PIK3C2BO00750 1634 aa14.74□□□□□ -0.05
SMAD3-215ENST00000560424 MAST1Q9Y2H9 1570 aa14.74□□□□□ -0.05
SMAD3-215ENST00000560424 SLAIN2Q9P270 581 aa14.74□□□□□ -0.05
SMAD3-215ENST00000560424 PRDM15P57071 1507 aaPredicted RBP14.74□□□□□ -0.05
SMAD3-215ENST00000560424 MROH1Q8NDA8 1641 aa14.74□□□□□ -0.05
SMAD3-215ENST00000560424 NKTRP30414 1462 aaKnown RBP14.73□□□□□ -0.05
SMAD3-215ENST00000560424 EFCAB6Q5THR3 1501 aa14.72□□□□□ -0.05
SMAD3-215ENST00000560424 SPATA31A6Q5VVP1 1343 aa14.72□□□□□ -0.05
SMAD3-215ENST00000560424 ARHGAP31Q2M1Z3 1444 aa14.72□□□□□ -0.05
SMAD3-215ENST00000560424 DUOX2Q9NRD8 1548 aa14.71□□□□□ -0.05
SMAD3-215ENST00000560424 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.71□□□□□ -0.059e-7■□□□□ 9.1
SMAD3-215ENST00000560424 KANK1Q14678 1352 aa14.71□□□□□ -0.06
SMAD3-215ENST00000560424 RXRBP28702 533 aa14.7□□□□□ -0.06
SMAD3-215ENST00000560424 C14orf37Q86TY3 774 aa14.7□□□□□ -0.06
SMAD3-215ENST00000560424 KDM5AP29375 1690 aaKnown RBP14.68□□□□□ -0.06
SMAD3-215ENST00000560424 FGD6Q6ZV73 1430 aa14.68□□□□□ -0.06
SMAD3-215ENST00000560424 NWD1Q149M9 1564 aa14.68□□□□□ -0.06
SMAD3-215ENST00000560424 COL16A1Q07092 1604 aaPredicted RBP14.67□□□□□ -0.06
SMAD3-215ENST00000560424 LRP6O75581 1613 aa14.66□□□□□ -0.06
SMAD3-215ENST00000560424 TET3O43151 1660 aa14.66□□□□□ -0.06
SMAD3-215ENST00000560424 IDI1Q13907 227 aa14.66□□□□□ -0.06
SMAD3-215ENST00000560424 ERBINQ96RT1 1412 aa14.66□□□□□ -0.06
SMAD3-215ENST00000560424 KIF15Q9NS87 1388 aa14.65□□□□□ -0.06
SMAD3-215ENST00000560424 PPP1R15AO75807 674 aaPredicted RBP14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 115.8 ms