RNA–Protein interactions for RNA: ENST00000559401.1

SNX1-207, Transcript of sorting nexin 1, humanhuman

TSL 2

Gene SNX1, Length 408 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-207ENST00000559401 DUOX2Q9NRD8 1548 aa12.65□□□□□ -0.38
SNX1-207ENST00000559401 MYO3AQ8NEV4 1616 aa12.64□□□□□ -0.39
SNX1-207ENST00000559401 RNF17Q9BXT8 1623 aaKnown RBP12.64□□□□□ -0.39
SNX1-207ENST00000559401 CHIC2Q9UKJ5 165 aa12.64□□□□□ -0.39
SNX1-207ENST00000559401 KIF15Q9NS87 1388 aa12.64□□□□□ -0.39
SNX1-207ENST00000559401 WASHC2CQ9Y4E1 1318 aa12.63□□□□□ -0.39
SNX1-207ENST00000559401 NPATQ14207 1427 aa12.63□□□□□ -0.39
SNX1-207ENST00000559401 FAM135AQ9P2D6 1515 aa12.63□□□□□ -0.39
SNX1-207ENST00000559401 PPP6R1Q9UPN7 881 aa12.63□□□□□ -0.39
SNX1-207ENST00000559401 ZC3H13Q5T200 1668 aaKnown RBP12.63□□□□□ -0.39
SNX1-207ENST00000559401 RRP7BPQ9NSQ0 103 aa12.62□□□□□ -0.39
SNX1-207ENST00000559401 CEP152O94986 1710 aa12.62□□□□□ -0.39
SNX1-207ENST00000559401 ANKRD30AQ9BXX3 1397 aa12.61□□□□□ -0.39
SNX1-207ENST00000559401 PTPRKQ15262 1439 aa12.61□□□□□ -0.39
SNX1-207ENST00000559401 ERBINQ96RT1 1412 aa12.6□□□□□ -0.39
SNX1-207ENST00000559401 ZNF142P52746 1687 aaPredicted RBP12.6□□□□□ -0.39
SNX1-207ENST00000559401 MROH1Q8NDA8 1641 aa12.59□□□□□ -0.39
SNX1-207ENST00000559401 ABCC3O15438 1527 aa12.59□□□□□ -0.39
SNX1-207ENST00000559401 CEP170BQ9Y4F5 1589 aaPredicted RBP12.59□□□□□ -0.39
SNX1-207ENST00000559401 PZPP20742 1482 aa12.59□□□□□ -0.39
SNX1-207ENST00000559401 CAMSAP1Q5T5Y3 1602 aa12.59□□□□□ -0.39
SNX1-207ENST00000559401 STRCQ7RTU9 1775 aa12.58□□□□□ -0.39
SNX1-207ENST00000559401 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.57□□□□□ -0.42e-6■■□□□ 13.6
SNX1-207ENST00000559401 PRDM15P57071 1507 aaPredicted RBP12.57□□□□□ -0.4
SNX1-207ENST00000559401 TNRQ92752 1358 aa12.56□□□□□ -0.4
SNX1-207ENST00000559401 NCOA1Q15788 1441 aa12.56□□□□□ -0.4
SNX1-207ENST00000559401 ITGAEP38570 1179 aa12.56□□□□□ -0.4
SNX1-207ENST00000559401 FBXO31Q5XUX0 539 aaPredicted RBP12.56□□□□□ -0.4
SNX1-207ENST00000559401 ADGRL2O95490 1459 aa12.56□□□□□ -0.4
SNX1-207ENST00000559401 CFAP65Q6ZU64 1925 aaKnown RBP12.56□□□□□ -0.4
SNX1-207ENST00000559401 KANK1Q14678 1352 aa12.56□□□□□ -0.4
SNX1-207ENST00000559401 DEPDC5O75140 1603 aa12.55□□□□□ -0.4
SNX1-207ENST00000559401 A2ML1A8K2U0 1454 aa12.54□□□□□ -0.4
SNX1-207ENST00000559401 DMRT2Q9Y5R5 561 aa12.53□□□□□ -0.4
SNX1-207ENST00000559401 ANKRD50Q9ULJ7 1429 aa12.51□□□□□ -0.41
SNX1-207ENST00000559401 ERVK-7P63135 1459 aa12.51□□□□□ -0.41
SNX1-207ENST00000559401 SPATA31D1Q6ZQQ2 1576 aa12.51□□□□□ -0.41
SNX1-207ENST00000559401 PLA2R1Q13018 1463 aa12.5□□□□□ -0.41
SNX1-207ENST00000559401 NLRP1Q9C000 1473 aa12.5□□□□□ -0.41
SNX1-207ENST00000559401 POLR1AO95602 1720 aaPredicted RBP12.5□□□□□ -0.41
SNX1-207ENST00000559401 UGGT1Q9NYU2 1555 aa12.49□□□□□ -0.41
SNX1-207ENST00000559401 PTPRTO14522 1441 aa12.49□□□□□ -0.41
SNX1-207ENST00000559401 NCKAP5LQ9HCH0 1330 aa12.49□□□□□ -0.41
SNX1-207ENST00000559401 ILDR1Q86SU0 546 aaPredicted RBP12.48□□□□□ -0.41
SNX1-207ENST00000559401 VWDEQ8N2E2 1590 aa12.47□□□□□ -0.41
SNX1-207ENST00000559401 ROCK1Q13464 1354 aa12.47□□□□□ -0.41
SNX1-207ENST00000559401 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.47□□□□□ -0.41
SNX1-207ENST00000559401 UNC13BO14795 1591 aa12.47□□□□□ -0.41
SNX1-207ENST00000559401 EFCAB6Q5THR3 1501 aa12.47□□□□□ -0.41
SNX1-207ENST00000559401 LMTK2Q8IWU2 1503 aa12.47□□□□□ -0.41
SNX1-207ENST00000559401 ARHGAP31Q2M1Z3 1444 aa12.46□□□□□ -0.41
SNX1-207ENST00000559401 RRBP1Q9P2E9 1410 aaKnown RBP12.46□□□□□ -0.41
SNX1-207ENST00000559401 PKD2Q13563 968 aa12.46□□□□□ -0.41
SNX1-207ENST00000559401 THEMISQ8N1K5 641 aaPredicted RBP12.45□□□□□ -0.42
SNX1-207ENST00000559401 UBR1Q8IWV7 1749 aa12.45□□□□□ -0.42
SNX1-207ENST00000559401 TET3O43151 1660 aa12.45□□□□□ -0.42
SNX1-207ENST00000559401 GCC2Q8IWJ2 1684 aa12.45□□□□□ -0.42
SNX1-207ENST00000559401 PIK3C2BO00750 1634 aa12.44□□□□□ -0.42
SNX1-207ENST00000559401 CERKQ8TCT0 537 aa12.43□□□□□ -0.42
SNX1-207ENST00000559401 NEURL4Q96JN8 1562 aa12.43□□□□□ -0.42
SNX1-207ENST00000559401 FBXO41Q8TF61 875 aa12.42□□□□□ -0.42
SNX1-207ENST00000559401 STAG3Q9UJ98 1225 aa12.42□□□□□ -0.42
SNX1-207ENST00000559401 IQGAP3Q86VI3 1631 aa12.41□□□□□ -0.42
SNX1-207ENST00000559401 SYNMO15061 1565 aa12.41□□□□□ -0.42
SNX1-207ENST00000559401 ANKLE2Q86XL3 938 aa12.41□□□□□ -0.42
SNX1-207ENST00000559401 E9PCH4 1651 aa12.4□□□□□ -0.42
SNX1-207ENST00000559401 IQGAP1P46940 1657 aa12.4□□□□□ -0.42
SNX1-207ENST00000559401 RPRD2Q5VT52 1461 aaKnown RBP12.4□□□□□ -0.43
SNX1-207ENST00000559401 ZNF335Q9H4Z2 1342 aaPredicted RBP12.39□□□□□ -0.43
SNX1-207ENST00000559401 LTBP4Q8N2S1 1624 aa12.39□□□□□ -0.43
SNX1-207ENST00000559401 NUP155O75694 1391 aa12.39□□□□□ -0.43
SNX1-207ENST00000559401 NPHP4O75161 1426 aaPredicted RBP12.38□□□□□ -0.43
SNX1-207ENST00000559401 NOS1P29475 1434 aa12.37□□□□□ -0.43
SNX1-207ENST00000559401 ADGRB3O60242 1522 aa12.37□□□□□ -0.43
SNX1-207ENST00000559401 KDM5AP29375 1690 aaKnown RBP12.37□□□□□ -0.43
SNX1-207ENST00000559401 SCAF11Q99590 1463 aaKnown RBP12.36□□□□□ -0.43
SNX1-207ENST00000559401 IDI1Q13907 227 aa12.36□□□□□ -0.43
SNX1-207ENST00000559401 MYO5BQ9ULV0 1848 aa12.36□□□□□ -0.43
SNX1-207ENST00000559401 NAIPQ13075 1403 aa12.36□□□□□ -0.43
SNX1-207ENST00000559401 MED14O60244 1454 aa12.35□□□□□ -0.43
SNX1-207ENST00000559401 EID1Q9Y6B2 187 aa12.35□□□□□ -0.43
SNX1-207ENST00000559401 SLIT1O75093 1534 aa12.35□□□□□ -0.43
SNX1-207ENST00000559401 ARHGAP23Q9P227 1491 aa12.34□□□□□ -0.43
SNX1-207ENST00000559401 TXNDC2Q86VQ3 553 aa12.34□□□□□ -0.43
SNX1-207ENST00000559401 TMEM2Q9UHN6 1383 aa12.33□□□□□ -0.44
SNX1-207ENST00000559401 CHGAP10645 457 aaKnown RBP12.33□□□□□ -0.44
SNX1-207ENST00000559401 SLC52A1Q9NWF4 448 aa12.33□□□□□ -0.44
SNX1-207ENST00000559401 HFM1A2PYH4 1435 aa12.33□□□□□ -0.44
SNX1-207ENST00000559401 SPHKAPQ2M3C7 1700 aa12.33□□□□□ -0.44
SNX1-207ENST00000559401 TRIM52Q96A61 297 aa12.32□□□□□ -0.44
SNX1-207ENST00000559401 IQSEC2Q5JU85 1478 aa12.32□□□□□ -0.44
SNX1-207ENST00000559401 CPS1P31327 1500 aa12.32□□□□□ -0.44
SNX1-207ENST00000559401 LTKP29376 864 aa12.31□□□□□ -0.44
SNX1-207ENST00000559401 TMEM131LA2VDJ0 1609 aa12.3□□□□□ -0.44
SNX1-207ENST00000559401 BCANQ96GW7 911 aa12.3□□□□□ -0.44
SNX1-207ENST00000559401 PPP1R15AO75807 674 aaPredicted RBP12.29□□□□□ -0.44
SNX1-207ENST00000559401 SENP3Q9H4L4 574 aaPredicted RBP12.29□□□□□ -0.44
SNX1-207ENST00000559401 STRCP1A6NGW2 1772 aa12.28□□□□□ -0.44
SNX1-207ENST00000559401 RIMS2Q9UQ26 1411 aa12.28□□□□□ -0.44
SNX1-207ENST00000559401 UBAP1LF5GYI3 381 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms