RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 ESF1Q9H501 851 aaKnown RBP13.77□□□□□ -0.21
LDLR-210ENST00000559340 NAIPQ13075 1403 aa13.76□□□□□ -0.21
LDLR-210ENST00000559340 SETD5Q9C0A6 1442 aa13.76□□□□□ -0.21
LDLR-210ENST00000559340 KANK1Q14678 1352 aa13.75□□□□□ -0.21
LDLR-210ENST00000559340 HRCP23327 699 aa13.75□□□□□ -0.21
LDLR-210ENST00000559340 GGT6Q6P531 493 aa13.74□□□□□ -0.21
LDLR-210ENST00000559340 FBXO41Q8TF61 875 aa13.74□□□□□ -0.21
LDLR-210ENST00000559340 MLECQ14165 292 aa13.73□□□□□ -0.21
LDLR-210ENST00000559340 RNF17Q9BXT8 1623 aaKnown RBP13.72□□□□□ -0.21
LDLR-210ENST00000559340 FAM135AQ9P2D6 1515 aa13.72□□□□□ -0.21
LDLR-210ENST00000559340 TRIM52Q96A61 297 aa13.71□□□□□ -0.21
LDLR-210ENST00000559340 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.71□□□□□ -0.215e-12■■■□□ 18.2
LDLR-210ENST00000559340 PCGF6Q9BYE7 350 aa13.71□□□□□ -0.21
LDLR-210ENST00000559340 MADDQ8WXG6 1647 aa13.71□□□□□ -0.22
LDLR-210ENST00000559340 SIGLEC1Q9BZZ2 1709 aa13.7□□□□□ -0.22
LDLR-210ENST00000559340 DEPDC5O75140 1603 aa13.7□□□□□ -0.22
LDLR-210ENST00000559340 FER1L4A9Z1Z3 1794 aa13.7□□□□□ -0.22
LDLR-210ENST00000559340 WASHC2CQ9Y4E1 1318 aa13.69□□□□□ -0.22
LDLR-210ENST00000559340 LMTK3Q96Q04 1460 aa13.69□□□□□ -0.22
LDLR-210ENST00000559340 CNTLNQ9NXG0 1405 aa13.69□□□□□ -0.22
LDLR-210ENST00000559340 UNC13BO14795 1591 aa13.69□□□□□ -0.22
LDLR-210ENST00000559340 ZC3H13Q5T200 1668 aaKnown RBP13.69□□□□□ -0.22
LDLR-210ENST00000559340 NUP155O75694 1391 aa13.68□□□□□ -0.22
LDLR-210ENST00000559340 CFAP65Q6ZU64 1925 aaKnown RBP13.68□□□□□ -0.22
LDLR-210ENST00000559340 RAB3GAP2Q9H2M9 1393 aa13.68□□□□□ -0.22
LDLR-210ENST00000559340 SETD1BQ9UPS6 1966 aaKnown RBP13.67□□□□□ -0.22
LDLR-210ENST00000559340 PRDM15P57071 1507 aaPredicted RBP13.66□□□□□ -0.22
LDLR-210ENST00000559340 MROH2AA6NES4 1674 aa13.66□□□□□ -0.22
LDLR-210ENST00000559340 KDM5DQ9BY66 1539 aa13.65□□□□□ -0.22
LDLR-210ENST00000559340 CEP152O94986 1710 aa13.65□□□□□ -0.22
LDLR-210ENST00000559340 CLTCQ00610 1675 aaKnown RBP13.65□□□□□ -0.22
LDLR-210ENST00000559340 IQGAP3Q86VI3 1631 aa13.64□□□□□ -0.23
LDLR-210ENST00000559340 MROH1Q8NDA8 1641 aa13.64□□□□□ -0.23
LDLR-210ENST00000559340 RIMS1Q86UR5 1692 aaKnown RBP13.64□□□□□ -0.23
LDLR-210ENST00000559340 TET3O43151 1660 aa13.63□□□□□ -0.23
LDLR-210ENST00000559340 VWDEQ8N2E2 1590 aa13.62□□□□□ -0.23
LDLR-210ENST00000559340 SLC4A1APQ9BWU0 796 aaKnown RBP13.62□□□□□ -0.23
LDLR-210ENST00000559340 ABCC3O15438 1527 aa13.62□□□□□ -0.23
LDLR-210ENST00000559340 LMTK2Q8IWU2 1503 aa13.62□□□□□ -0.23
LDLR-210ENST00000559340 CAMSAP1Q5T5Y3 1602 aa13.61□□□□□ -0.23
LDLR-210ENST00000559340 ZMYM3Q14202 1370 aa13.6□□□□□ -0.23
LDLR-210ENST00000559340 MPHOSPH9Q99550 1183 aa13.6□□□□□ -0.23
LDLR-210ENST00000559340 ARHGAP31Q2M1Z3 1444 aa13.59□□□□□ -0.23
LDLR-210ENST00000559340 HSPA2P54652 639 aa13.58□□□□□ -0.24
LDLR-210ENST00000559340 PLPPR3Q6T4P5 718 aa13.58□□□□□ -0.24
LDLR-210ENST00000559340 RPRD2Q5VT52 1461 aaKnown RBP13.58□□□□□ -0.24
LDLR-210ENST00000559340 C3P01024 1663 aa13.58□□□□□ -0.24
LDLR-210ENST00000559340 EFCAB6Q5THR3 1501 aa13.56□□□□□ -0.24
LDLR-210ENST00000559340 PKD2Q13563 968 aa13.56□□□□□ -0.24
LDLR-210ENST00000559340 PZPP20742 1482 aa13.55□□□□□ -0.24
LDLR-210ENST00000559340 E9PCH4 1651 aa13.55□□□□□ -0.24
LDLR-210ENST00000559340 NPATQ14207 1427 aa13.54□□□□□ -0.24
LDLR-210ENST00000559340 PREX1Q8TCU6 1659 aa13.53□□□□□ -0.24
LDLR-210ENST00000559340 CEBPAP49715 358 aaPredicted RBP13.52□□□□□ -0.25
LDLR-210ENST00000559340 CERKQ8TCT0 537 aa13.52□□□□□ -0.25
LDLR-210ENST00000559340 SPHKAPQ2M3C7 1700 aa13.52□□□□□ -0.25
LDLR-210ENST00000559340 SLC52A1Q9NWF4 448 aa13.51□□□□□ -0.25
LDLR-210ENST00000559340 ERVK-7P63135 1459 aa13.5□□□□□ -0.25
LDLR-210ENST00000559340 TNRQ92752 1358 aa13.5□□□□□ -0.25
LDLR-210ENST00000559340 DMRT2Q9Y5R5 561 aa13.5□□□□□ -0.25
LDLR-210ENST00000559340 SPATA31D1Q6ZQQ2 1576 aa13.49□□□□□ -0.25
LDLR-210ENST00000559340 FBXO31Q5XUX0 539 aaPredicted RBP13.49□□□□□ -0.25
LDLR-210ENST00000559340 NOS1P29475 1434 aa13.48□□□□□ -0.25
LDLR-210ENST00000559340 UHRF1BP1Q6BDS2 1440 aa13.48□□□□□ -0.25
LDLR-210ENST00000559340 KIF1BO60333 1816 aa13.48□□□□□ -0.25
LDLR-210ENST00000559340 PTPRTO14522 1441 aa13.47□□□□□ -0.25
LDLR-210ENST00000559340 DHX57Q6P158 1386 aaKnown RBP13.46□□□□□ -0.25
LDLR-210ENST00000559340 STAG3Q9UJ98 1225 aa13.46□□□□□ -0.25
LDLR-210ENST00000559340 NLRP1Q9C000 1473 aa13.46□□□□□ -0.25
LDLR-210ENST00000559340 TRPM2O94759 1503 aa13.45□□□□□ -0.26
LDLR-210ENST00000559340 FOXD1Q16676 465 aa13.45□□□□□ -0.26
LDLR-210ENST00000559340 CLSPNQ9HAW4 1339 aa13.44□□□□□ -0.26
LDLR-210ENST00000559340 CCER1Q8TC90 406 aaPredicted RBP13.44□□□□□ -0.26
LDLR-210ENST00000559340 CCDC144AA2RUR9 1427 aa13.44□□□□□ -0.26
LDLR-210ENST00000559340 ANKRD30BQ9BXX2 1392 aa13.44□□□□□ -0.26
LDLR-210ENST00000559340 SYNMO15061 1565 aa13.43□□□□□ -0.26
LDLR-210ENST00000559340 IDI1Q13907 227 aa13.43□□□□□ -0.26
LDLR-210ENST00000559340 KDM5AP29375 1690 aaKnown RBP13.43□□□□□ -0.26
LDLR-210ENST00000559340 HDGFP51858 240 aaKnown RBP13.42□□□□□ -0.26
LDLR-210ENST00000559340 THEMISQ8N1K5 641 aaPredicted RBP13.42□□□□□ -0.26
LDLR-210ENST00000559340 PIK3C2BO00750 1634 aa13.42□□□□□ -0.26
LDLR-210ENST00000559340 MYO3AQ8NEV4 1616 aa13.42□□□□□ -0.26
LDLR-210ENST00000559340 A2ML1A8K2U0 1454 aa13.42□□□□□ -0.26
LDLR-210ENST00000559340 CHGAP10645 457 aaKnown RBP13.41□□□□□ -0.26
LDLR-210ENST00000559340 PLA2R1Q13018 1463 aa13.41□□□□□ -0.26
LDLR-210ENST00000559340 ZNF142P52746 1687 aaPredicted RBP13.4□□□□□ -0.26
LDLR-210ENST00000559340 CLTCL1P53675 1640 aa13.39□□□□□ -0.27
LDLR-210ENST00000559340 MYO5BQ9ULV0 1848 aa13.39□□□□□ -0.27
LDLR-210ENST00000559340 CEP170BQ9Y4F5 1589 aaPredicted RBP13.39□□□□□ -0.27
LDLR-210ENST00000559340 STRCQ7RTU9 1775 aa13.38□□□□□ -0.27
LDLR-210ENST00000559340 UGGT1Q9NYU2 1555 aa13.38□□□□□ -0.27
LDLR-210ENST00000559340 UBR1Q8IWV7 1749 aa13.38□□□□□ -0.27
LDLR-210ENST00000559340 ZNF326Q5BKZ1 582 aaKnown RBP13.37□□□□□ -0.27
LDLR-210ENST00000559340 ADGRB3O60242 1522 aa13.37□□□□□ -0.27
LDLR-210ENST00000559340 RPGRIP1LQ68CZ1 1315 aa13.37□□□□□ -0.27
LDLR-210ENST00000559340 TMEM131LA2VDJ0 1609 aa13.36□□□□□ -0.27
LDLR-210ENST00000559340 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.36□□□□□ -0.27
LDLR-210ENST00000559340 STAC3Q96MF2 364 aa13.36□□□□□ -0.27
LDLR-210ENST00000559340 NEURL4Q96JN8 1562 aa13.36□□□□□ -0.27
LDLR-210ENST00000559340 NEUROD1Q13562 356 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 159.1 ms