RNA–Protein interactions for RNA: ENST00000558890.5

LRRC28-211, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 978 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-211ENST00000558890 DUOX2Q9NRD8 1548 aa11.48□□□□□ -0.57
LRRC28-211ENST00000558890 FAM135AQ9P2D6 1515 aa11.48□□□□□ -0.57
LRRC28-211ENST00000558890 PTPRMP28827 1452 aa11.47□□□□□ -0.57
LRRC28-211ENST00000558890 HFM1A2PYH4 1435 aa11.47□□□□□ -0.57
LRRC28-211ENST00000558890 ANKRD30AQ9BXX3 1397 aa11.47□□□□□ -0.57
LRRC28-211ENST00000558890 FAM50AQ14320 339 aaKnown RBP11.47□□□□□ -0.57
LRRC28-211ENST00000558890 ERBINQ96RT1 1412 aa11.46□□□□□ -0.57
LRRC28-211ENST00000558890 CCER1Q8TC90 406 aaPredicted RBP11.46□□□□□ -0.57
LRRC28-211ENST00000558890 CHIC2Q9UKJ5 165 aa11.46□□□□□ -0.57
LRRC28-211ENST00000558890 RRP7BPQ9NSQ0 103 aa11.45□□□□□ -0.58
LRRC28-211ENST00000558890 KIF3BO15066 747 aa11.44□□□□□ -0.58
LRRC28-211ENST00000558890 MADDQ8WXG6 1647 aa11.44□□□□□ -0.58
LRRC28-211ENST00000558890 DEPDC5O75140 1603 aa11.43□□□□□ -0.58
LRRC28-211ENST00000558890 RNF17Q9BXT8 1623 aaKnown RBP11.43□□□□□ -0.58
LRRC28-211ENST00000558890 CEBPAP49715 358 aaPredicted RBP11.43□□□□□ -0.58
LRRC28-211ENST00000558890 KIF15Q9NS87 1388 aa11.42□□□□□ -0.58
LRRC28-211ENST00000558890 GGT6Q6P531 493 aa11.42□□□□□ -0.58
LRRC28-211ENST00000558890 NAIPQ13075 1403 aa11.41□□□□□ -0.58
LRRC28-211ENST00000558890 UNC13BO14795 1591 aa11.41□□□□□ -0.58
LRRC28-211ENST00000558890 ZMYM3Q14202 1370 aa11.41□□□□□ -0.58
LRRC28-211ENST00000558890 ZC3H13Q5T200 1668 aaKnown RBP11.4□□□□□ -0.58
LRRC28-211ENST00000558890 PRDM15P57071 1507 aaPredicted RBP11.4□□□□□ -0.59
LRRC28-211ENST00000558890 SCAF1Q9H7N4 1312 aaKnown RBP11.39□□□□□ -0.59
LRRC28-211ENST00000558890 ANKRD50Q9ULJ7 1429 aa11.39□□□□□ -0.59
LRRC28-211ENST00000558890 KDM5DQ9BY66 1539 aa11.39□□□□□ -0.59
LRRC28-211ENST00000558890 CNTLNQ9NXG0 1405 aa11.38□□□□□ -0.59
LRRC28-211ENST00000558890 MROH1Q8NDA8 1641 aa11.38□□□□□ -0.59
LRRC28-211ENST00000558890 RIMS1Q86UR5 1692 aaKnown RBP11.37□□□□□ -0.59
LRRC28-211ENST00000558890 VWDEQ8N2E2 1590 aa11.37□□□□□ -0.59
LRRC28-211ENST00000558890 SETD5Q9C0A6 1442 aa11.36□□□□□ -0.59
LRRC28-211ENST00000558890 SETD1BQ9UPS6 1966 aaKnown RBP11.36□□□□□ -0.59
LRRC28-211ENST00000558890 FER1L4A9Z1Z3 1794 aa11.36□□□□□ -0.59
LRRC28-211ENST00000558890 IQGAP3Q86VI3 1631 aa11.35□□□□□ -0.59
LRRC28-211ENST00000558890 FBXO31Q5XUX0 539 aaPredicted RBP11.35□□□□□ -0.59
LRRC28-211ENST00000558890 LMTK2Q8IWU2 1503 aa11.35□□□□□ -0.59
LRRC28-211ENST00000558890 WASHC2CQ9Y4E1 1318 aa11.35□□□□□ -0.59
LRRC28-211ENST00000558890 MROH2AA6NES4 1674 aa11.34□□□□□ -0.59
LRRC28-211ENST00000558890 ITGAEP38570 1179 aa11.34□□□□□ -0.59
LRRC28-211ENST00000558890 ABCC3O15438 1527 aa11.33□□□□□ -0.6
LRRC28-211ENST00000558890 NPATQ14207 1427 aa11.33□□□□□ -0.6
LRRC28-211ENST00000558890 LMTK3Q96Q04 1460 aa11.32□□□□□ -0.6
LRRC28-211ENST00000558890 ESF1Q9H501 851 aaKnown RBP11.32□□□□□ -0.6
LRRC28-211ENST00000558890 C3P01024 1663 aa11.32□□□□□ -0.6
LRRC28-211ENST00000558890 TET3O43151 1660 aa11.31□□□□□ -0.6
LRRC28-211ENST00000558890 ARHGAP31Q2M1Z3 1444 aa11.31□□□□□ -0.6
LRRC28-211ENST00000558890 CLTCQ00610 1675 aaKnown RBP11.3□□□□□ -0.6
LRRC28-211ENST00000558890 PZPP20742 1482 aa11.3□□□□□ -0.6
LRRC28-211ENST00000558890 RPRD2Q5VT52 1461 aaKnown RBP11.3□□□□□ -0.6
LRRC28-211ENST00000558890 RAB3GAP2Q9H2M9 1393 aa11.29□□□□□ -0.6
LRRC28-211ENST00000558890 KCNA4P22459 653 aa11.29□□□□□ -0.6
LRRC28-211ENST00000558890 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.29□□□□□ -0.6
LRRC28-211ENST00000558890 HSPA2P54652 639 aa11.28□□□□□ -0.6
LRRC28-211ENST00000558890 KANK1Q14678 1352 aa11.28□□□□□ -0.6
LRRC28-211ENST00000558890 EFCAB6Q5THR3 1501 aa11.27□□□□□ -0.61
LRRC28-211ENST00000558890 CAMSAP1Q5T5Y3 1602 aa11.27□□□□□ -0.61
LRRC28-211ENST00000558890 NCBP3Q53F19 620 aaKnown RBP11.25□□□□□ -0.61
LRRC28-211ENST00000558890 CEP152O94986 1710 aa11.25□□□□□ -0.61
LRRC28-211ENST00000558890 NUP155O75694 1391 aa11.25□□□□□ -0.61
LRRC28-211ENST00000558890 TNRQ92752 1358 aa11.25□□□□□ -0.61
LRRC28-211ENST00000558890 NOS1P29475 1434 aa11.25□□□□□ -0.61
LRRC28-211ENST00000558890 ERVK-7P63135 1459 aa11.24□□□□□ -0.61
LRRC28-211ENST00000558890 SPATA31D1Q6ZQQ2 1576 aa11.24□□□□□ -0.61
LRRC28-211ENST00000558890 UHRF1BP1Q6BDS2 1440 aa11.23□□□□□ -0.61
LRRC28-211ENST00000558890 E9PCH4 1651 aa11.22□□□□□ -0.61
LRRC28-211ENST00000558890 MAPK8IP2Q13387 824 aaPredicted RBP11.22□□□□□ -0.61
LRRC28-211ENST00000558890 IDI1Q13907 227 aa11.22□□□□□ -0.61
LRRC28-211ENST00000558890 CLSPNQ9HAW4 1339 aa11.22□□□□□ -0.61
LRRC28-211ENST00000558890 KDM5AP29375 1690 aaKnown RBP11.21□□□□□ -0.61
LRRC28-211ENST00000558890 PREX1Q8TCU6 1659 aa11.21□□□□□ -0.61
LRRC28-211ENST00000558890 NEURL4Q96JN8 1562 aa11.21□□□□□ -0.61
LRRC28-211ENST00000558890 A2ML1A8K2U0 1454 aa11.21□□□□□ -0.61
LRRC28-211ENST00000558890 SPHKAPQ2M3C7 1700 aa11.21□□□□□ -0.62
LRRC28-211ENST00000558890 CFAP65Q6ZU64 1925 aaKnown RBP11.2□□□□□ -0.62
LRRC28-211ENST00000558890 NLRP1Q9C000 1473 aa11.19□□□□□ -0.62
LRRC28-211ENST00000558890 PTPRTO14522 1441 aa11.19□□□□□ -0.62
LRRC28-211ENST00000558890 TRPM2O94759 1503 aa11.19□□□□□ -0.62
LRRC28-211ENST00000558890 PLA2R1Q13018 1463 aa11.19□□□□□ -0.62
LRRC28-211ENST00000558890 PIK3C2BO00750 1634 aa11.18□□□□□ -0.62
LRRC28-211ENST00000558890 CNKSR2Q8WXI2 1034 aa11.18□□□□□ -0.62
LRRC28-211ENST00000558890 SLC52A1Q9NWF4 448 aa11.18□□□□□ -0.62
LRRC28-211ENST00000558890 STRCQ7RTU9 1775 aa11.18□□□□□ -0.62
LRRC28-211ENST00000558890 NCKAP5LQ9HCH0 1330 aa11.17□□□□□ -0.62
LRRC28-211ENST00000558890 SYNMO15061 1565 aa11.17□□□□□ -0.62
LRRC28-211ENST00000558890 CEP170BQ9Y4F5 1589 aaPredicted RBP11.17□□□□□ -0.62
LRRC28-211ENST00000558890 THEMISQ8N1K5 641 aaPredicted RBP11.17□□□□□ -0.62
LRRC28-211ENST00000558890 MYO3AQ8NEV4 1616 aa11.17□□□□□ -0.62
LRRC28-211ENST00000558890 DHX57Q6P158 1386 aaKnown RBP11.16□□□□□ -0.62
LRRC28-211ENST00000558890 LTKP29376 864 aa11.16□□□□□ -0.62
LRRC28-211ENST00000558890 PKD2Q13563 968 aa11.16□□□□□ -0.62
LRRC28-211ENST00000558890 ZNF142P52746 1687 aaPredicted RBP11.16□□□□□ -0.62
LRRC28-211ENST00000558890 MPHOSPH9Q99550 1183 aa11.15□□□□□ -0.62
LRRC28-211ENST00000558890 ARHGAP23Q9P227 1491 aa11.14□□□□□ -0.63
LRRC28-211ENST00000558890 TRIM52Q96A61 297 aa11.14□□□□□ -0.63
LRRC28-211ENST00000558890 SLC4A1APQ9BWU0 796 aaKnown RBP11.14□□□□□ -0.63
LRRC28-211ENST00000558890 UGGT1Q9NYU2 1555 aa11.13□□□□□ -0.63
LRRC28-211ENST00000558890 DMRT2Q9Y5R5 561 aa11.12□□□□□ -0.63
LRRC28-211ENST00000558890 ANKRD30BQ9BXX2 1392 aa11.12□□□□□ -0.63
LRRC28-211ENST00000558890 SLIT1O75093 1534 aa11.11□□□□□ -0.63
LRRC28-211ENST00000558890 ZNF316A6NFI3 1004 aaPredicted RBP11.11□□□□□ -0.63
LRRC28-211ENST00000558890 ANKLE2Q86XL3 938 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms