RNA–Protein interactions for RNA: ENST00000558739.1

SMAD3-206, Transcript of SMAD family member 3, humanhuman

TSL 3

Gene SMAD3, Length 586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-206ENST00000558739 LRRC7Q96NW7 1537 aa19.92■□□□□ 0.78
SMAD3-206ENST00000558739 TNRQ92752 1358 aa19.9■□□□□ 0.78
SMAD3-206ENST00000558739 NPHP4O75161 1426 aaPredicted RBP19.9■□□□□ 0.78
SMAD3-206ENST00000558739 GPATCH8Q9UKJ3 1502 aaKnown RBP19.9■□□□□ 0.78
SMAD3-206ENST00000558739 IQGAP1P46940 1657 aa19.9■□□□□ 0.78
SMAD3-206ENST00000558739 ADGBQ8N7X0 1667 aa19.9■□□□□ 0.78
SMAD3-206ENST00000558739 POTEAQ6S8J7 498 aa19.88■□□□□ 0.77
SMAD3-206ENST00000558739 DEPDC5O75140 1603 aa19.87■□□□□ 0.77
SMAD3-206ENST00000558739 CCDC18Q5T9S5 1454 aa19.87■□□□□ 0.77
SMAD3-206ENST00000558739 SYNMO15061 1565 aa19.87■□□□□ 0.77
SMAD3-206ENST00000558739 MED14O60244 1454 aa19.86■□□□□ 0.77
SMAD3-206ENST00000558739 UBTFP17480 764 aaKnown RBP19.86■□□□□ 0.77
SMAD3-206ENST00000558739 PZPP20742 1482 aa19.85■□□□□ 0.77
SMAD3-206ENST00000558739 CASKIN1Q8WXD9 1431 aa19.85■□□□□ 0.77
SMAD3-206ENST00000558739 ANKLE2Q86XL3 938 aa19.84■□□□□ 0.77
SMAD3-206ENST00000558739 UGGT1Q9NYU2 1555 aa19.83■□□□□ 0.77
SMAD3-206ENST00000558739 KIAA1107Q9UPP5 1409 aa19.83■□□□□ 0.76
SMAD3-206ENST00000558739 XIRP1Q702N8 1843 aaKnown RBP19.83■□□□□ 0.76
SMAD3-206ENST00000558739 KDM5DQ9BY66 1539 aa19.81■□□□□ 0.76
SMAD3-206ENST00000558739 ZC3H13Q5T200 1668 aaKnown RBP19.8■□□□□ 0.76
SMAD3-206ENST00000558739 PLEKHH2Q8IVE3 1493 aa19.78■□□□□ 0.76
SMAD3-206ENST00000558739 FAM135AQ9P2D6 1515 aa19.77■□□□□ 0.76
SMAD3-206ENST00000558739 NLRP1Q9C000 1473 aa19.77■□□□□ 0.76
SMAD3-206ENST00000558739 ZNF644Q9H582 1327 aaPredicted RBP19.76■□□□□ 0.75
SMAD3-206ENST00000558739 MIA2Q96PC5 1412 aa19.76■□□□□ 0.75
SMAD3-206ENST00000558739 THEMISQ8N1K5 641 aaPredicted RBP19.75■□□□□ 0.75
SMAD3-206ENST00000558739 CFDP1Q9UEE9 299 aaPredicted RBP19.75■□□□□ 0.75
SMAD3-206ENST00000558739 FYCO1Q9BQS8 1478 aa19.73■□□□□ 0.75
SMAD3-206ENST00000558739 MBD5Q9P267 1494 aa19.73■□□□□ 0.75
SMAD3-206ENST00000558739 DHX29Q7Z478 1369 aaKnown RBP19.72■□□□□ 0.75
SMAD3-206ENST00000558739 KIF3BO15066 747 aa19.71■□□□□ 0.75
SMAD3-206ENST00000558739 TIAM1Q13009 1591 aa19.7■□□□□ 0.74
SMAD3-206ENST00000558739 CCNB3Q8WWL7 1395 aa19.7■□□□□ 0.74
SMAD3-206ENST00000558739 ROBO1Q9Y6N7 1651 aa19.68■□□□□ 0.74
SMAD3-206ENST00000558739 WASHC2CQ9Y4E1 1318 aa19.68■□□□□ 0.74
SMAD3-206ENST00000558739 UBR1Q8IWV7 1749 aa19.66■□□□□ 0.74
SMAD3-206ENST00000558739 RTEL1-TNFRSF6BF6WH68 1400 aa19.66■□□□□ 0.74
SMAD3-206ENST00000558739 FAM135BQ49AJ0 1406 aa19.65■□□□□ 0.74
SMAD3-206ENST00000558739 SCAF11Q99590 1463 aaKnown RBP19.64■□□□□ 0.73
SMAD3-206ENST00000558739 ABCC3O15438 1527 aa19.61■□□□□ 0.73
SMAD3-206ENST00000558739 ERVK-7P63135 1459 aa19.61■□□□□ 0.73
SMAD3-206ENST00000558739 NCOA2Q15596 1464 aa19.61■□□□□ 0.73
SMAD3-206ENST00000558739 CFAP65Q6ZU64 1925 aaKnown RBP19.61■□□□□ 0.73
SMAD3-206ENST00000558739 MAP3K1Q13233 1512 aa19.61■□□□□ 0.73
SMAD3-206ENST00000558739 LTKP29376 864 aa19.6■□□□□ 0.73
SMAD3-206ENST00000558739 CHIC1Q5VXU3 224 aa19.6■□□□□ 0.73
SMAD3-206ENST00000558739 UPF1Q92900 1129 aaKnown RBP eCLIP19.59■□□□□ 0.73
SMAD3-206ENST00000558739 CCDC141Q6ZP82 1450 aa19.58■□□□□ 0.72
SMAD3-206ENST00000558739 TMEM94Q12767 1356 aa19.57■□□□□ 0.72
SMAD3-206ENST00000558739 RBM33Q96EV2 1170 aaKnown RBP19.57■□□□□ 0.72
SMAD3-206ENST00000558739 ARHGAP23Q9P227 1491 aa19.56■□□□□ 0.72
SMAD3-206ENST00000558739 CEP152O94986 1710 aa19.56■□□□□ 0.72
SMAD3-206ENST00000558739 MTUS2Q5JR59 1369 aa19.56■□□□□ 0.72
SMAD3-206ENST00000558739 LRP6O75581 1613 aa19.55■□□□□ 0.72
SMAD3-206ENST00000558739 MROH1Q8NDA8 1641 aa19.55■□□□□ 0.72
SMAD3-206ENST00000558739 PHLPP1O60346 1717 aa19.55■□□□□ 0.72
SMAD3-206ENST00000558739 SLIT1O75093 1534 aa19.55■□□□□ 0.72
SMAD3-206ENST00000558739 CAMSAP2Q08AD1 1489 aa19.54■□□□□ 0.72
SMAD3-206ENST00000558739 TRIM52Q96A61 297 aa19.52■□□□□ 0.72
SMAD3-206ENST00000558739 TXNDC2Q86VQ3 553 aa19.5■□□□□ 0.71
SMAD3-206ENST00000558739 COL16A1Q07092 1604 aaPredicted RBP19.5■□□□□ 0.71
SMAD3-206ENST00000558739 EHBP1L1Q8N3D4 1523 aa19.5■□□□□ 0.71
SMAD3-206ENST00000558739 PIK3C2BO00750 1634 aa19.47■□□□□ 0.71
SMAD3-206ENST00000558739 LRRC9Q6ZRR7 1453 aa19.47■□□□□ 0.71
SMAD3-206ENST00000558739 JCADQ9P266 1359 aa19.46■□□□□ 0.71
SMAD3-206ENST00000558739 CEP162Q5TB80 1403 aa19.45■□□□□ 0.7
SMAD3-206ENST00000558739 PRDM15P57071 1507 aaPredicted RBP19.44■□□□□ 0.7
SMAD3-206ENST00000558739 ARHGEF5Q12774 1597 aa19.44■□□□□ 0.7
SMAD3-206ENST00000558739 NWD1Q149M9 1564 aa19.42■□□□□ 0.7
SMAD3-206ENST00000558739 EIF2AK4Q9P2K8 1649 aaKnown RBP19.42■□□□□ 0.7
SMAD3-206ENST00000558739 EP400Q96L91 3159 aa19.41■□□□□ 0.7
SMAD3-206ENST00000558739 TMEM2Q9UHN6 1383 aa19.41■□□□□ 0.7
SMAD3-206ENST00000558739 TET3O43151 1660 aa19.4■□□□□ 0.7
SMAD3-206ENST00000558739 PROSER2Q86WR7 435 aaPredicted RBP19.4■□□□□ 0.7
SMAD3-206ENST00000558739 KCNA6P17658 529 aa19.39■□□□□ 0.69
SMAD3-206ENST00000558739 SLC26A8Q96RN1 970 aa19.39■□□□□ 0.69
SMAD3-206ENST00000558739 NKTRP30414 1462 aaKnown RBP19.38■□□□□ 0.69
SMAD3-206ENST00000558739 EID1Q9Y6B2 187 aa19.38■□□□□ 0.69
SMAD3-206ENST00000558739 SLAIN2Q9P270 581 aa19.37■□□□□ 0.69
SMAD3-206ENST00000558739 MEX3CQ5U5Q3 659 aaKnown RBP19.36■□□□□ 0.69
SMAD3-206ENST00000558739 KDM5AP29375 1690 aaKnown RBP19.36■□□□□ 0.69
SMAD3-206ENST00000558739 SHPRHQ149N8 1683 aa19.36■□□□□ 0.69
SMAD3-206ENST00000558739 MAST1Q9Y2H9 1570 aa19.36■□□□□ 0.69
SMAD3-206ENST00000558739 MSH6P52701 1360 aa19.35■□□□□ 0.69
SMAD3-206ENST00000558739 ZNF772Q68DY9 489 aaPredicted RBP19.35■□□□□ 0.69
SMAD3-206ENST00000558739 EFCAB6Q5THR3 1501 aa19.35■□□□□ 0.69
SMAD3-206ENST00000558739 SPATA31A6Q5VVP1 1343 aa19.32■□□□□ 0.68
SMAD3-206ENST00000558739 FGD6Q6ZV73 1430 aa19.32■□□□□ 0.68
SMAD3-206ENST00000558739 CDK12Q9NYV4 1490 aaPredicted RBP19.31■□□□□ 0.68
SMAD3-206ENST00000558739 RXRBP28702 533 aa19.31■□□□□ 0.68
SMAD3-206ENST00000558739 RGS12O14924 1447 aa19.31■□□□□ 0.68
SMAD3-206ENST00000558739 ARHGAP31Q2M1Z3 1444 aa19.31■□□□□ 0.68
SMAD3-206ENST00000558739 AHDC1Q5TGY3 1603 aaPredicted RBP19.3■□□□□ 0.68
SMAD3-206ENST00000558739 TSPY4P0CV99 314 aa19.3■□□□□ 0.68
SMAD3-206ENST00000558739 TSPY10P0CW01 314 aa19.3■□□□□ 0.68
SMAD3-206ENST00000558739 RSPH4AQ5TD94 716 aa19.3■□□□□ 0.68
SMAD3-206ENST00000558739 DIP2AQ14689 1571 aa19.29■□□□□ 0.68
SMAD3-206ENST00000558739 CHD2O14647 1828 aaKnown RBP19.28■□□□□ 0.68
SMAD3-206ENST00000558739 STAG3Q9UJ98 1225 aa19.26■□□□□ 0.67
SMAD3-206ENST00000558739 ADGRB3O60242 1522 aa19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms