RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 FHAD1B1AJZ9 1412 aa7.9□□□□□ -1.14
LDLR-209ENST00000558528 PDE4DQ08499 809 aa7.9□□□□□ -1.14
LDLR-209ENST00000558528 FBXO22Q8NEZ5 403 aa7.9□□□□□ -1.14
LDLR-209ENST00000558528 DDX27Q96GQ7 796 aaKnown RBP7.9□□□□□ -1.14
LDLR-209ENST00000558528 ARID3AQ99856 593 aa7.9□□□□□ -1.14
LDLR-209ENST00000558528 LARP6Q9BRS8 491 aaKnown RBP7.9□□□□□ -1.14
LDLR-209ENST00000558528 TRIM66O15016 1216 aa7.89□□□□□ -1.15
LDLR-209ENST00000558528 PPP1R37O75864 691 aa7.89□□□□□ -1.15
LDLR-209ENST00000558528 CAMK2BQ13554 666 aa7.89□□□□□ -1.15
LDLR-209ENST00000558528 DDRGK1Q96HY6 314 aa7.89□□□□□ -1.15
LDLR-209ENST00000558528 NCKAP5LQ9HCH0 1330 aa7.88□□□□□ -1.15
LDLR-209ENST00000558528 PTPRMP28827 1452 aa7.87□□□□□ -1.15
LDLR-209ENST00000558528 JPH4Q96JJ6 628 aa7.87□□□□□ -1.15
LDLR-209ENST00000558528 CRISPLD2Q9H0B8 497 aa7.86□□□□□ -1.15
LDLR-209ENST00000558528 PCDHB8Q9UN66 801 aa7.86□□□□□ -1.15
LDLR-209ENST00000558528 PCDHB13Q9Y5F0 798 aa7.86□□□□□ -1.15
LDLR-209ENST00000558528 CUL7Q14999 1698 aa7.86□□□□□ -1.15
LDLR-209ENST00000558528 APBB1O00213 710 aa7.85□□□□□ -1.15
LDLR-209ENST00000558528 MKRN3Q13064 507 aaKnown RBP7.85□□□□□ -1.15
LDLR-209ENST00000558528 RBM26Q5T8P6 1007 aaKnown RBP7.85□□□□□ -1.15
LDLR-209ENST00000558528 C1orf115Q9H7X2 142 aa7.85□□□□□ -1.15
LDLR-209ENST00000558528 CEP162Q5TB80 1403 aa7.85□□□□□ -1.15
LDLR-209ENST00000558528 MAP3K4Q9Y6R4 1608 aa7.85□□□□□ -1.15
LDLR-209ENST00000558528 ADAMTSL3P82987 1691 aa7.84□□□□□ -1.15
LDLR-209ENST00000558528 PLB1Q6P1J6 1458 aa7.84□□□□□ -1.15
LDLR-209ENST00000558528 TEX14Q8IWB6 1497 aa7.84□□□□□ -1.15
LDLR-209ENST00000558528 ZNF316A6NFI3 1004 aaPredicted RBP7.84□□□□□ -1.15
LDLR-209ENST00000558528 TSPYL2Q9H2G4 693 aaPredicted RBP7.84□□□□□ -1.15
LDLR-209ENST00000558528 GOPCQ9HD26 462 aa7.84□□□□□ -1.15
LDLR-209ENST00000558528 CLIP1P30622 1438 aa7.84□□□□□ -1.15
LDLR-209ENST00000558528 EFCAB3Q8N7B9 438 aa7.83□□□□□ -1.16
LDLR-209ENST00000558528 ASXL2Q76L83 1435 aa7.83□□□□□ -1.16
LDLR-209ENST00000558528 A6NJR5 290 aa7.82□□□□□ -1.16
LDLR-209ENST00000558528 SPDYE16A6NNV3 312 aaPredicted RBP7.82□□□□□ -1.16
LDLR-209ENST00000558528 PHF8Q9UPP1 1060 aa7.82□□□□□ -1.16
LDLR-209ENST00000558528 REM2Q8IYK8 340 aaPredicted RBP7.81□□□□□ -1.16
LDLR-209ENST00000558528 CABP2Q9NPB3 220 aa7.81□□□□□ -1.16
LDLR-209ENST00000558528 MINK1Q8N4C8 1332 aaPredicted RBP7.8□□□□□ -1.16
LDLR-209ENST00000558528 ABCC2Q92887 1545 aa7.8□□□□□ -1.16
LDLR-209ENST00000558528 EPRSP07814 1512 aaKnown RBP7.79□□□□□ -1.16
LDLR-209ENST00000558528 KIAA0586Q9BVV6 1533 aa7.79□□□□□ -1.16
LDLR-209ENST00000558528 FAM117AQ9C073 453 aa7.79□□□□□ -1.16
LDLR-209ENST00000558528 CCDC61Q9Y6R9 512 aa7.79□□□□□ -1.16
LDLR-209ENST00000558528 ARID3CA6NKF2 412 aa7.78□□□□□ -1.16
LDLR-209ENST00000558528 MLLT3P42568 568 aaPredicted RBP7.78□□□□□ -1.16
LDLR-209ENST00000558528 HSPA2P54652 639 aa7.78□□□□□ -1.16
LDLR-209ENST00000558528 AMHR2Q16671 573 aa7.77□□□□□ -1.17
LDLR-209ENST00000558528 MAP2K5Q13163 448 aa7.76□□□□□ -1.17
LDLR-209ENST00000558528 KCTD17Q8N5Z5 321 aa7.76□□□□□ -1.17
LDLR-209ENST00000558528 VPS8Q8N3P4 1428 aa7.76□□□□□ -1.17
LDLR-209ENST00000558528 EFCAB5A4FU69 1503 aa7.75□□□□□ -1.17
LDLR-209ENST00000558528 TRAK2O60296 914 aa7.75□□□□□ -1.17
LDLR-209ENST00000558528 PAK3O75914 559 aaPredicted RBP7.75□□□□□ -1.17
LDLR-209ENST00000558528 PDIA6Q15084 440 aa7.75□□□□□ -1.17
LDLR-209ENST00000558528 FMN1Q68DA7 1419 aa7.75□□□□□ -1.17
LDLR-209ENST00000558528 CARMIL2Q6F5E8 1435 aa7.75□□□□□ -1.17
LDLR-209ENST00000558528 MADDQ8WXG6 1647 aa7.74□□□□□ -1.17
LDLR-209ENST00000558528 PLEKHG3A1L390 1219 aa7.74□□□□□ -1.17
LDLR-209ENST00000558528 ONECUT3O60422 494 aaPredicted RBP7.74□□□□□ -1.17
LDLR-209ENST00000558528 CCDC82Q8N4S0 544 aa7.74□□□□□ -1.17
LDLR-209ENST00000558528 BCORL1Q5H9F3 1711 aa7.73□□□□□ -1.17
LDLR-209ENST00000558528 PPP1R15BQ5SWA1 713 aa7.73□□□□□ -1.17
LDLR-209ENST00000558528 PCMTD1Q96MG8 357 aaPredicted RBP7.73□□□□□ -1.17
LDLR-209ENST00000558528 TRAIPQ9BWF2 469 aa7.73□□□□□ -1.17
LDLR-209ENST00000558528 UHRF1BP1LA0JNW5 1464 aa7.73□□□□□ -1.17
LDLR-209ENST00000558528 PTPRGP23470 1445 aa7.72□□□□□ -1.17
LDLR-209ENST00000558528 GPR37O15354 613 aa7.72□□□□□ -1.17
LDLR-209ENST00000558528 IFNL1Q8IU54 200 aa7.72□□□□□ -1.17
LDLR-209ENST00000558528 FARP1Q9Y4F1 1045 aaPredicted RBP7.72□□□□□ -1.17
LDLR-209ENST00000558528 IQSEC2Q5JU85 1478 aa7.72□□□□□ -1.17
LDLR-209ENST00000558528 ARHGAP35Q9NRY4 1499 aa7.72□□□□□ -1.17
LDLR-209ENST00000558528 MAGI3Q5TCQ9 1506 aa7.72□□□□□ -1.17
LDLR-209ENST00000558528 CCDC102AQ96A19 550 aa7.71□□□□□ -1.18
LDLR-209ENST00000558528 UGGT2Q9NYU1 1516 aa7.7□□□□□ -1.18
LDLR-209ENST00000558528 KDM5BQ9UGL1 1544 aa7.7□□□□□ -1.18
LDLR-209ENST00000558528 PITPNM1O00562 1244 aa7.7□□□□□ -1.18
LDLR-209ENST00000558528 IRF6O14896 467 aa7.7□□□□□ -1.18
LDLR-209ENST00000558528 GOLGA2Q08379 1002 aa7.7□□□□□ -1.18
LDLR-209ENST00000558528 PARP9Q8IXQ6 854 aa7.7□□□□□ -1.18
LDLR-209ENST00000558528 GPHNQ9NQX3 736 aaPredicted RBP7.7□□□□□ -1.18
LDLR-209ENST00000558528 SERPINA10Q9UK55 444 aa7.7□□□□□ -1.18
LDLR-209ENST00000558528 IQGAP2Q13576 1575 aa7.7□□□□□ -1.18
LDLR-209ENST00000558528 MED1Q15648 1581 aaPredicted RBP7.69□□□□□ -1.18
LDLR-209ENST00000558528 MS4A4AQ96JQ5 239 aa7.69□□□□□ -1.18
LDLR-209ENST00000558528 ATP1B4Q9UN42 357 aaPredicted RBP7.69□□□□□ -1.18
LDLR-209ENST00000558528 CDK11AQ9UQ88 783 aaPredicted RBP7.69□□□□□ -1.18
LDLR-209ENST00000558528 ARAP3Q8WWN8 1544 aa7.68□□□□□ -1.18
LDLR-209ENST00000558528 DPYSL4O14531 572 aa7.68□□□□□ -1.18
LDLR-209ENST00000558528 NECTIN2Q92692 538 aa7.68□□□□□ -1.18
LDLR-209ENST00000558528 CCDC97Q96F63 343 aaPredicted RBP7.68□□□□□ -1.18
LDLR-209ENST00000558528 CASKIN1Q8WXD9 1431 aa7.68□□□□□ -1.18
LDLR-209ENST00000558528 YEATS2Q9ULM3 1422 aa7.68□□□□□ -1.18
LDLR-209ENST00000558528 MAP3K1Q13233 1512 aa7.68□□□□□ -1.18
LDLR-209ENST00000558528 LTBP4Q8N2S1 1624 aa7.67□□□□□ -1.18
LDLR-209ENST00000558528 RIMS1Q86UR5 1692 aaKnown RBP7.67□□□□□ -1.18
LDLR-209ENST00000558528 GNPATO15228 680 aa7.67□□□□□ -1.18
LDLR-209ENST00000558528 STRCQ7RTU9 1775 aa7.66□□□□□ -1.18
LDLR-209ENST00000558528 TTLL12Q14166 644 aaPredicted RBP7.66□□□□□ -1.18
LDLR-209ENST00000558528 HIC1Q14526 733 aa7.66□□□□□ -1.18
LDLR-209ENST00000558528 MCM6Q14566 821 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms