RNA–Protein interactions for RNA: ENST00000558314.5

TPM1-211, Transcript of tropomyosin 1, humanhuman

TSL 1 (best)

Gene TPM1, Length 1,031 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-211ENST00000558314 MYOM3Q5VTT5 1437 aa24.37■■□□□ 1.49
TPM1-211ENST00000558314 MAP3K1Q13233 1512 aa24.36■■□□□ 1.49
TPM1-211ENST00000558314 KDM5DQ9BY66 1539 aa24.35■■□□□ 1.49
TPM1-211ENST00000558314 TNRQ92752 1358 aa24.34■■□□□ 1.49
TPM1-211ENST00000558314 PKD2Q13563 968 aa24.33■■□□□ 1.49
TPM1-211ENST00000558314 ZNF142P52746 1687 aaPredicted RBP24.33■■□□□ 1.49
TPM1-211ENST00000558314 MIA2Q96PC5 1412 aa24.32■■□□□ 1.48
TPM1-211ENST00000558314 A2ML1A8K2U0 1454 aa24.31■■□□□ 1.48
TPM1-211ENST00000558314 ZNF335Q9H4Z2 1342 aaPredicted RBP24.31■■□□□ 1.48
TPM1-211ENST00000558314 PZPP20742 1482 aa24.29■■□□□ 1.48
TPM1-211ENST00000558314 PLA2R1Q13018 1463 aa24.28■■□□□ 1.48
TPM1-211ENST00000558314 MAST1Q9Y2H9 1570 aa24.27■■□□□ 1.48
TPM1-211ENST00000558314 LTBP4Q8N2S1 1624 aa24.27■■□□□ 1.48
TPM1-211ENST00000558314 DNMT1P26358 1616 aaKnown RBP24.26■■□□□ 1.47
TPM1-211ENST00000558314 RRP7BPQ9NSQ0 103 aa24.26■■□□□ 1.47
TPM1-211ENST00000558314 TCOF1Q13428 1488 aaKnown RBP24.25■■□□□ 1.47
TPM1-211ENST00000558314 FAM135AQ9P2D6 1515 aa24.23■■□□□ 1.47
TPM1-211ENST00000558314 PTPN23Q9H3S7 1636 aa24.22■■□□□ 1.47
TPM1-211ENST00000558314 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.22■■□□□ 1.479e-7■■■□□ 19
TPM1-211ENST00000558314 CHIC2Q9UKJ5 165 aa24.22■■□□□ 1.47
TPM1-211ENST00000558314 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.21■■□□□ 1.471e-7■■□□□ 13.6
TPM1-211ENST00000558314 KIF15Q9NS87 1388 aa24.21■■□□□ 1.47
TPM1-211ENST00000558314 ABCC3O15438 1527 aa24.2■■□□□ 1.47
TPM1-211ENST00000558314 ABCC5O15440 1437 aa24.2■■□□□ 1.46
TPM1-211ENST00000558314 RNF17Q9BXT8 1623 aaKnown RBP24.2■■□□□ 1.46
TPM1-211ENST00000558314 THEMISQ8N1K5 641 aaPredicted RBP24.19■■□□□ 1.46
TPM1-211ENST00000558314 DUOX2Q9NRD8 1548 aa24.19■■□□□ 1.46
TPM1-211ENST00000558314 UBAP1LF5GYI3 381 aa24.18■■□□□ 1.46
TPM1-211ENST00000558314 ANKLE2Q86XL3 938 aa24.18■■□□□ 1.46
TPM1-211ENST00000558314 FGD6Q6ZV73 1430 aa24.18■■□□□ 1.46
TPM1-211ENST00000558314 EIF2AK4Q9P2K8 1649 aaKnown RBP24.17■■□□□ 1.46
TPM1-211ENST00000558314 DAPK1P53355 1430 aa24.16■■□□□ 1.46
TPM1-211ENST00000558314 UGGT1Q9NYU2 1555 aa24.16■■□□□ 1.46
TPM1-211ENST00000558314 NLRP1Q9C000 1473 aa24.15■■□□□ 1.46
TPM1-211ENST00000558314 FAM50AQ14320 339 aaKnown RBP24.15■■□□□ 1.46
TPM1-211ENST00000558314 CEP152O94986 1710 aa24.14■■□□□ 1.45
TPM1-211ENST00000558314 ZC3H13Q5T200 1668 aaKnown RBP24.14■■□□□ 1.45
TPM1-211ENST00000558314 CROCC2H7BZ55 1655 aa24.13■■□□□ 1.45
TPM1-211ENST00000558314 MROH1Q8NDA8 1641 aa24.13■■□□□ 1.45
TPM1-211ENST00000558314 IQSEC2Q5JU85 1478 aa24.13■■□□□ 1.45
TPM1-211ENST00000558314 SHANK2Q9UPX8 1470 aa24.13■■□□□ 1.45
TPM1-211ENST00000558314 POLR1AO95602 1720 aaPredicted RBP24.13■■□□□ 1.45
TPM1-211ENST00000558314 ERVK-7P63135 1459 aa24.12■■□□□ 1.45
TPM1-211ENST00000558314 CFAP65Q6ZU64 1925 aaKnown RBP24.12■■□□□ 1.45
TPM1-211ENST00000558314 SCAF1Q9H7N4 1312 aaKnown RBP24.1■■□□□ 1.45
TPM1-211ENST00000558314 NEURL4Q96JN8 1562 aa24.1■■□□□ 1.45
TPM1-211ENST00000558314 ERBINQ96RT1 1412 aa24.1■■□□□ 1.45
TPM1-211ENST00000558314 ANKRD30AQ9BXX3 1397 aa24.09■■□□□ 1.45
TPM1-211ENST00000558314 DISP3Q9P2K9 1392 aa24.09■■□□□ 1.45
TPM1-211ENST00000558314 SPATA31D1Q6ZQQ2 1576 aa24.08■■□□□ 1.45
TPM1-211ENST00000558314 NPHP4O75161 1426 aaPredicted RBP24.08■■□□□ 1.44
TPM1-211ENST00000558314 KANK1Q14678 1352 aa24.07■■□□□ 1.44
TPM1-211ENST00000558314 PIP4K2BP78356 416 aa24.04■■□□□ 1.44
TPM1-211ENST00000558314 STAG3Q9UJ98 1225 aa24.03■■□□□ 1.44
TPM1-211ENST00000558314 PRDM15P57071 1507 aaPredicted RBP24.03■■□□□ 1.44
TPM1-211ENST00000558314 PPARGC1BQ86YN6 1023 aaKnown RBP23.99■■□□□ 1.43
TPM1-211ENST00000558314 CPS1P31327 1500 aa23.98■■□□□ 1.43
TPM1-211ENST00000558314 DEPDC5O75140 1603 aa23.97■■□□□ 1.43
TPM1-211ENST00000558314 IQGAP1P46940 1657 aa23.97■■□□□ 1.43
TPM1-211ENST00000558314 TXNDC2Q86VQ3 553 aa23.97■■□□□ 1.43
TPM1-211ENST00000558314 MED14O60244 1454 aa23.96■■□□□ 1.43
TPM1-211ENST00000558314 ARHGAP31Q2M1Z3 1444 aa23.96■■□□□ 1.43
TPM1-211ENST00000558314 TOM1O60784 492 aa23.96■■□□□ 1.43
TPM1-211ENST00000558314 VWDEQ8N2E2 1590 aa23.95■■□□□ 1.43
TPM1-211ENST00000558314 EID1Q9Y6B2 187 aa23.95■■□□□ 1.42
TPM1-211ENST00000558314 UBR1Q8IWV7 1749 aa23.95■■□□□ 1.42
TPM1-211ENST00000558314 LTKP29376 864 aa23.94■■□□□ 1.42
TPM1-211ENST00000558314 SENP3Q9H4L4 574 aaPredicted RBP23.94■■□□□ 1.42
TPM1-211ENST00000558314 ITGAEP38570 1179 aa23.93■■□□□ 1.42
TPM1-211ENST00000558314 SCAF11Q99590 1463 aaKnown RBP23.92■■□□□ 1.42
TPM1-211ENST00000558314 ADGRL2O95490 1459 aa23.9■■□□□ 1.42
TPM1-211ENST00000558314 IDI1Q13907 227 aa23.9■■□□□ 1.42
TPM1-211ENST00000558314 ILDR2Q71H61 639 aa23.9■■□□□ 1.42
TPM1-211ENST00000558314 PIK3C2BO00750 1634 aa23.9■■□□□ 1.42
TPM1-211ENST00000558314 ANKRD50Q9ULJ7 1429 aa23.9■■□□□ 1.42
TPM1-211ENST00000558314 HSPA1LP34931 641 aa23.88■■□□□ 1.41
TPM1-211ENST00000558314 LMTK2Q8IWU2 1503 aa23.86■■□□□ 1.41
TPM1-211ENST00000558314 BCANQ96GW7 911 aa23.86■■□□□ 1.41
TPM1-211ENST00000558314 TMEM2Q9UHN6 1383 aa23.85■■□□□ 1.41
TPM1-211ENST00000558314 SLIT1O75093 1534 aa23.84■■□□□ 1.41
TPM1-211ENST00000558314 ARHGAP23Q9P227 1491 aa23.84■■□□□ 1.41
TPM1-211ENST00000558314 EFCAB6Q5THR3 1501 aa23.84■■□□□ 1.41
TPM1-211ENST00000558314 STRCP1A6NGW2 1772 aa23.83■■□□□ 1.4
TPM1-211ENST00000558314 SYNMO15061 1565 aa23.82■■□□□ 1.4
TPM1-211ENST00000558314 LRRC7Q96NW7 1537 aa23.82■■□□□ 1.4
TPM1-211ENST00000558314 CHGAP10645 457 aaKnown RBP23.8■■□□□ 1.4
TPM1-211ENST00000558314 SLC26A8Q96RN1 970 aa23.8■■□□□ 1.4
TPM1-211ENST00000558314 NOS1P29475 1434 aa23.78■■□□□ 1.4
TPM1-211ENST00000558314 SLC52A1Q9NWF4 448 aa23.78■■□□□ 1.4
TPM1-211ENST00000558314 ADGRB3O60242 1522 aa23.75■■□□□ 1.39
TPM1-211ENST00000558314 PPP1R15AO75807 674 aaPredicted RBP23.75■■□□□ 1.39
TPM1-211ENST00000558314 RBM33Q96EV2 1170 aaKnown RBP23.73■■□□□ 1.39
TPM1-211ENST00000558314 TET3O43151 1660 aa23.72■■□□□ 1.39
TPM1-211ENST00000558314 ALKQ9UM73 1620 aa23.71■■□□□ 1.39
TPM1-211ENST00000558314 RPRD2Q5VT52 1461 aaKnown RBP23.71■■□□□ 1.39
TPM1-211ENST00000558314 ROCK1Q13464 1354 aa23.71■■□□□ 1.39
TPM1-211ENST00000558314 NUP155O75694 1391 aa23.7■■□□□ 1.38
TPM1-211ENST00000558314 NUTM2DQ5VT03 806 aaPredicted RBP23.7■■□□□ 1.38
TPM1-211ENST00000558314 PROSER2Q86WR7 435 aaPredicted RBP23.7■■□□□ 1.38
TPM1-211ENST00000558314 SOCS7O14512 581 aa23.69■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms