RNA–Protein interactions for RNA: ENST00000558172.5

LRRC28-204, Transcript of leucine rich repeat containing 28, humanhuman

TSL 5

Gene LRRC28, Length 644 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-204ENST00000558172 GGT6Q6P531 493 aa15.71■□□□□ 0.11
LRRC28-204ENST00000558172 FER1L4A9Z1Z3 1794 aa15.7■□□□□ 0.1
LRRC28-204ENST00000558172 DEPDC5O75140 1603 aa15.7■□□□□ 0.1
LRRC28-204ENST00000558172 ACIN1Q9UKV3 1341 aaKnown RBP15.69■□□□□ 0.1
LRRC28-204ENST00000558172 FAM135AQ9P2D6 1515 aa15.68■□□□□ 0.1
LRRC28-204ENST00000558172 ESF1Q9H501 851 aaKnown RBP15.68■□□□□ 0.1
LRRC28-204ENST00000558172 SETD5Q9C0A6 1442 aa15.67■□□□□ 0.1
LRRC28-204ENST00000558172 ZC3H13Q5T200 1668 aaKnown RBP15.67■□□□□ 0.1
LRRC28-204ENST00000558172 KANK1Q14678 1352 aa15.66■□□□□ 0.1
LRRC28-204ENST00000558172 PRDM15P57071 1507 aaPredicted RBP15.66■□□□□ 0.1
LRRC28-204ENST00000558172 CNTLNQ9NXG0 1405 aa15.66■□□□□ 0.1
LRRC28-204ENST00000558172 UNC13BO14795 1591 aa15.66■□□□□ 0.1
LRRC28-204ENST00000558172 MROH1Q8NDA8 1641 aa15.65■□□□□ 0.1
LRRC28-204ENST00000558172 MADDQ8WXG6 1647 aa15.65■□□□□ 0.1
LRRC28-204ENST00000558172 MROH2AA6NES4 1674 aa15.65■□□□□ 0.1
LRRC28-204ENST00000558172 CLTCQ00610 1675 aaKnown RBP15.65■□□□□ 0.1
LRRC28-204ENST00000558172 RIMS1Q86UR5 1692 aaKnown RBP15.64■□□□□ 0.09
LRRC28-204ENST00000558172 WASHC2CQ9Y4E1 1318 aa15.64■□□□□ 0.09
LRRC28-204ENST00000558172 KDM5DQ9BY66 1539 aa15.63■□□□□ 0.09
LRRC28-204ENST00000558172 KDM4FA0A1W2PPD8 638 aa15.63■□□□□ 0.09
LRRC28-204ENST00000558172 HRCP23327 699 aa15.63■□□□□ 0.09
LRRC28-204ENST00000558172 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.63■□□□□ 0.09
LRRC28-204ENST00000558172 CEP152O94986 1710 aa15.63■□□□□ 0.09
LRRC28-204ENST00000558172 VWDEQ8N2E2 1590 aa15.62■□□□□ 0.09
LRRC28-204ENST00000558172 IQGAP3Q86VI3 1631 aa15.61■□□□□ 0.09
LRRC28-204ENST00000558172 ABCC3O15438 1527 aa15.6■□□□□ 0.09
LRRC28-204ENST00000558172 LMTK2Q8IWU2 1503 aa15.6■□□□□ 0.09
LRRC28-204ENST00000558172 NUP155O75694 1391 aa15.6■□□□□ 0.09
LRRC28-204ENST00000558172 SETD1BQ9UPS6 1966 aaKnown RBP15.59■□□□□ 0.09
LRRC28-204ENST00000558172 RAB3GAP2Q9H2M9 1393 aa15.59■□□□□ 0.09
LRRC28-204ENST00000558172 CFAP65Q6ZU64 1925 aaKnown RBP15.58■□□□□ 0.09
LRRC28-204ENST00000558172 CAMSAP1Q5T5Y3 1602 aa15.58■□□□□ 0.09
LRRC28-204ENST00000558172 C3P01024 1663 aa15.58■□□□□ 0.08
LRRC28-204ENST00000558172 TRIM52Q96A61 297 aa15.58■□□□□ 0.08
LRRC28-204ENST00000558172 ZMYM3Q14202 1370 aa15.58■□□□□ 0.08
LRRC28-204ENST00000558172 PTPRMP28827 1452 aa15.58■□□□□ 0.08
LRRC28-204ENST00000558172 TET3O43151 1660 aa15.57■□□□□ 0.08
LRRC28-204ENST00000558172 ARHGAP31Q2M1Z3 1444 aa15.55■□□□□ 0.08
LRRC28-204ENST00000558172 PCGF6Q9BYE7 350 aa15.54■□□□□ 0.08
LRRC28-204ENST00000558172 EFCAB6Q5THR3 1501 aa15.53■□□□□ 0.08
LRRC28-204ENST00000558172 PZPP20742 1482 aa15.52■□□□□ 0.08
LRRC28-204ENST00000558172 RPRD2Q5VT52 1461 aaKnown RBP15.52■□□□□ 0.07
LRRC28-204ENST00000558172 CEBPAP49715 358 aaPredicted RBP15.51■□□□□ 0.07
LRRC28-204ENST00000558172 SLC4A1APQ9BWU0 796 aaKnown RBP15.51■□□□□ 0.07
LRRC28-204ENST00000558172 NPATQ14207 1427 aa15.51■□□□□ 0.07
LRRC28-204ENST00000558172 E9PCH4 1651 aa15.51■□□□□ 0.07
LRRC28-204ENST00000558172 PREX1Q8TCU6 1659 aa15.5■□□□□ 0.07
LRRC28-204ENST00000558172 PLPPR3Q6T4P5 718 aa15.49■□□□□ 0.07
LRRC28-204ENST00000558172 MPHOSPH9Q99550 1183 aa15.49■□□□□ 0.07
LRRC28-204ENST00000558172 SPATA31D1Q6ZQQ2 1576 aa15.47■□□□□ 0.07
LRRC28-204ENST00000558172 PKD2Q13563 968 aa15.46■□□□□ 0.07
LRRC28-204ENST00000558172 FBXO31Q5XUX0 539 aaPredicted RBP15.46■□□□□ 0.07
LRRC28-204ENST00000558172 ERVK-7P63135 1459 aa15.46■□□□□ 0.06
LRRC28-204ENST00000558172 SPHKAPQ2M3C7 1700 aa15.46■□□□□ 0.06
LRRC28-204ENST00000558172 NOS1P29475 1434 aa15.44■□□□□ 0.06
LRRC28-204ENST00000558172 TNRQ92752 1358 aa15.44■□□□□ 0.06
LRRC28-204ENST00000558172 PTPRTO14522 1441 aa15.42■□□□□ 0.06
LRRC28-204ENST00000558172 SLC52A1Q9NWF4 448 aa15.41■□□□□ 0.06
LRRC28-204ENST00000558172 MYO3AQ8NEV4 1616 aa15.41■□□□□ 0.06
LRRC28-204ENST00000558172 SYNMO15061 1565 aa15.41■□□□□ 0.06
LRRC28-204ENST00000558172 NLRP1Q9C000 1473 aa15.4■□□□□ 0.06
LRRC28-204ENST00000558172 UHRF1BP1Q6BDS2 1440 aa15.4■□□□□ 0.06
LRRC28-204ENST00000558172 ZNF142P52746 1687 aaPredicted RBP15.39■□□□□ 0.05
LRRC28-204ENST00000558172 TRPM2O94759 1503 aa15.38■□□□□ 0.05
LRRC28-204ENST00000558172 PIK3C2BO00750 1634 aa15.38■□□□□ 0.05
LRRC28-204ENST00000558172 FOXD1Q16676 465 aa15.37■□□□□ 0.05
LRRC28-204ENST00000558172 KIF1BO60333 1816 aa15.37■□□□□ 0.05
LRRC28-204ENST00000558172 A2ML1A8K2U0 1454 aa15.37■□□□□ 0.05
LRRC28-204ENST00000558172 KDM5AP29375 1690 aaKnown RBP15.37■□□□□ 0.05
LRRC28-204ENST00000558172 CEP170BQ9Y4F5 1589 aaPredicted RBP15.36■□□□□ 0.05
LRRC28-204ENST00000558172 PLA2R1Q13018 1463 aa15.35■□□□□ 0.05
LRRC28-204ENST00000558172 IDI1Q13907 227 aa15.35■□□□□ 0.05
LRRC28-204ENST00000558172 DHX57Q6P158 1386 aaKnown RBP15.35■□□□□ 0.05
LRRC28-204ENST00000558172 UBR1Q8IWV7 1749 aa15.34■□□□□ 0.05
LRRC28-204ENST00000558172 UGGT1Q9NYU2 1555 aa15.33■□□□□ 0.05
LRRC28-204ENST00000558172 CLTCL1P53675 1640 aa15.33■□□□□ 0.04
LRRC28-204ENST00000558172 THEMISQ8N1K5 641 aaPredicted RBP15.33■□□□□ 0.04
LRRC28-204ENST00000558172 STAG3Q9UJ98 1225 aa15.33■□□□□ 0.04
LRRC28-204ENST00000558172 MYO5BQ9ULV0 1848 aa15.33■□□□□ 0.04
LRRC28-204ENST00000558172 ANKRD30BQ9BXX2 1392 aa15.33■□□□□ 0.04
LRRC28-204ENST00000558172 CCDC144AA2RUR9 1427 aa15.33■□□□□ 0.04
LRRC28-204ENST00000558172 LMTK3Q96Q04 1460 aa15.33■□□□□ 0.04
LRRC28-204ENST00000558172 ADGRB3O60242 1522 aa15.31■□□□□ 0.04
LRRC28-204ENST00000558172 TMEM131LA2VDJ0 1609 aa15.31■□□□□ 0.04
LRRC28-204ENST00000558172 CHGAP10645 457 aaKnown RBP15.28■□□□□ 0.04
LRRC28-204ENST00000558172 NEURL4Q96JN8 1562 aa15.28■□□□□ 0.04
LRRC28-204ENST00000558172 HDGFP51858 240 aaKnown RBP15.26■□□□□ 0.03
LRRC28-204ENST00000558172 SLIT1O75093 1534 aa15.25■□□□□ 0.03
LRRC28-204ENST00000558172 CLSPNQ9HAW4 1339 aa15.24■□□□□ 0.03
LRRC28-204ENST00000558172 POLR1AO95602 1720 aaPredicted RBP15.24■□□□□ 0.03
LRRC28-204ENST00000558172 HSPA2P54652 639 aa15.24■□□□□ 0.03
LRRC28-204ENST00000558172 ARHGAP23Q9P227 1491 aa15.24■□□□□ 0.03
LRRC28-204ENST00000558172 TMEM2Q9UHN6 1383 aa15.24■□□□□ 0.03
LRRC28-204ENST00000558172 ZNF326Q5BKZ1 582 aaKnown RBP15.23■□□□□ 0.03
LRRC28-204ENST00000558172 ANKLE2Q86XL3 938 aa15.23■□□□□ 0.03
LRRC28-204ENST00000558172 RPGRIP1LQ68CZ1 1315 aa15.22■□□□□ 0.03
LRRC28-204ENST00000558172 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.22■□□□□ 0.03
LRRC28-204ENST00000558172 EID1Q9Y6B2 187 aa15.22■□□□□ 0.03
LRRC28-204ENST00000558172 SPATA31E1Q6ZUB1 1445 aa15.22■□□□□ 0.03
LRRC28-204ENST00000558172 STRCQ7RTU9 1775 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms