RNA–Protein interactions for RNA: ENST00000558080.1

SPG11-205, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 1 (best)

Gene SPG11, Length 759 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-205ENST00000558080 FMN1Q68DA7 1419 aa12.32□□□□□ -0.44
SPG11-205ENST00000558080 VASPP50552 380 aaPredicted RBP12.32□□□□□ -0.44
SPG11-205ENST00000558080 FAM163AQ96GL9 167 aaPredicted RBP12.32□□□□□ -0.44
SPG11-205ENST00000558080 TTC37Q6PGP7 1564 aa12.31□□□□□ -0.44
SPG11-205ENST00000558080 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.31□□□□□ -0.44
SPG11-205ENST00000558080 IRX5P78411 483 aaPredicted RBP12.3□□□□□ -0.44
SPG11-205ENST00000558080 NEO1Q92859 1461 aa12.29□□□□□ -0.44
SPG11-205ENST00000558080 RAPGEF3O95398 923 aa12.29□□□□□ -0.44
SPG11-205ENST00000558080 PLCG2P16885 1265 aa12.29□□□□□ -0.44
SPG11-205ENST00000558080 PHLDB1Q86UU1 1377 aa12.29□□□□□ -0.44
SPG11-205ENST00000558080 MYO5CQ9NQX4 1742 aa12.28□□□□□ -0.44
SPG11-205ENST00000558080 CFAP74Q9C0B2 1584 aa12.28□□□□□ -0.44
SPG11-205ENST00000558080 RICTORQ6R327 1708 aa12.28□□□□□ -0.44
SPG11-205ENST00000558080 FRMPD1Q5SYB0 1578 aa12.27□□□□□ -0.44
SPG11-205ENST00000558080 GSE1Q14687 1217 aa12.26□□□□□ -0.45
SPG11-205ENST00000558080 PCDHB8Q9UN66 801 aa12.26□□□□□ -0.45
SPG11-205ENST00000558080 FANCAO15360 1455 aa12.26□□□□□ -0.45
SPG11-205ENST00000558080 KIF14Q15058 1648 aa12.26□□□□□ -0.45
SPG11-205ENST00000558080 KLHL34Q8N239 644 aa12.25□□□□□ -0.45
SPG11-205ENST00000558080 AKNAQ7Z591 1439 aa12.25□□□□□ -0.45
SPG11-205ENST00000558080 PCF11O94913 1555 aaKnown RBP12.25□□□□□ -0.45
SPG11-205ENST00000558080 CDK11AQ9UQ88 783 aaPredicted RBP12.24□□□□□ -0.45
SPG11-205ENST00000558080 OCEL1Q9H607 264 aa12.23□□□□□ -0.45
SPG11-205ENST00000558080 DENND4BO75064 1496 aaPredicted RBP12.22□□□□□ -0.45
SPG11-205ENST00000558080 CLIP1P30622 1438 aa12.21□□□□□ -0.45
SPG11-205ENST00000558080 CDC42BPBQ9Y5S2 1711 aa12.21□□□□□ -0.45
SPG11-205ENST00000558080 ZNF467Q7Z7K2 595 aaPredicted RBP12.21□□□□□ -0.45
SPG11-205ENST00000558080 SLAIN1Q8ND83 568 aa12.21□□□□□ -0.45
SPG11-205ENST00000558080 PLCH2O75038 1416 aa12.2□□□□□ -0.46
SPG11-205ENST00000558080 TROQ12816 1431 aaPredicted RBP12.2□□□□□ -0.46
SPG11-205ENST00000558080 CASKIN1Q8WXD9 1431 aa12.2□□□□□ -0.46
SPG11-205ENST00000558080 CHRM1P11229 460 aaPredicted RBP12.2□□□□□ -0.46
SPG11-205ENST00000558080 BCORL1Q5H9F3 1711 aa12.19□□□□□ -0.46
SPG11-205ENST00000558080 ADAMTSL3P82987 1691 aa12.19□□□□□ -0.46
SPG11-205ENST00000558080 ARID4BQ4LE39 1312 aaPredicted RBP12.18□□□□□ -0.46
SPG11-205ENST00000558080 ARHGEF40Q8TER5 1519 aa12.18□□□□□ -0.46
SPG11-205ENST00000558080 CDC42BPAQ5VT25 1732 aa12.18□□□□□ -0.46
SPG11-205ENST00000558080 EFCAB2Q5VUJ9 269 aa12.18□□□□□ -0.46
SPG11-205ENST00000558080 CCDC18Q5T9S5 1454 aa12.18□□□□□ -0.46
SPG11-205ENST00000558080 SCAPERQ9BY12 1400 aa12.18□□□□□ -0.46
SPG11-205ENST00000558080 FYCO1Q9BQS8 1478 aa12.17□□□□□ -0.46
SPG11-205ENST00000558080 SIGLEC1Q9BZZ2 1709 aa12.17□□□□□ -0.46
SPG11-205ENST00000558080 ARHGAP5Q13017 1502 aa12.16□□□□□ -0.46
SPG11-205ENST00000558080 ZMYM4Q5VZL5 1548 aa12.16□□□□□ -0.46
SPG11-205ENST00000558080 ZFYVE16Q7Z3T8 1539 aa12.16□□□□□ -0.46
SPG11-205ENST00000558080 PREX2Q70Z35 1606 aa12.15□□□□□ -0.46
SPG11-205ENST00000558080 RIMS1Q86UR5 1692 aaKnown RBP12.15□□□□□ -0.46
SPG11-205ENST00000558080 MADDQ8WXG6 1647 aa12.15□□□□□ -0.47
SPG11-205ENST00000558080 HECW2Q9P2P5 1572 aa12.14□□□□□ -0.47
SPG11-205ENST00000558080 YEATS2Q9ULM3 1422 aa12.14□□□□□ -0.47
SPG11-205ENST00000558080 POGZQ7Z3K3 1410 aa12.13□□□□□ -0.47
SPG11-205ENST00000558080 ITSN2Q9NZM3 1697 aa12.12□□□□□ -0.47
SPG11-205ENST00000558080 FER1L4A9Z1Z3 1794 aa12.11□□□□□ -0.47
SPG11-205ENST00000558080 PTPRMP28827 1452 aa12.11□□□□□ -0.47
SPG11-205ENST00000558080 MAGI2Q86UL8 1455 aa12.11□□□□□ -0.47
SPG11-205ENST00000558080 PDCD7Q8N8D1 485 aaKnown RBP12.11□□□□□ -0.47
SPG11-205ENST00000558080 CEP162Q5TB80 1403 aa12.11□□□□□ -0.47
SPG11-205ENST00000558080 LOC105371045A0A1W2PR82 267 aa12.1□□□□□ -0.47
SPG11-205ENST00000558080 ST18O60284 1047 aa12.1□□□□□ -0.47
SPG11-205ENST00000558080 MYT1LQ9UL68 1186 aa12.1□□□□□ -0.47
SPG11-205ENST00000558080 MLECQ14165 292 aa12.09□□□□□ -0.47
SPG11-205ENST00000558080 IFNLR1Q8IU57 520 aaPredicted RBP12.09□□□□□ -0.47
SPG11-205ENST00000558080 AFAP1Q8N556 730 aa12.09□□□□□ -0.47
SPG11-205ENST00000558080 ZNF518AQ6AHZ1 1483 aa12.08□□□□□ -0.47
SPG11-205ENST00000558080 PSEN1P49768 467 aa12.08□□□□□ -0.48
SPG11-205ENST00000558080 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.08□□□□□ -0.48
SPG11-205ENST00000558080 KDM5CP41229 1560 aa12.08□□□□□ -0.48
SPG11-205ENST00000558080 ATP10AO60312 1499 aa12.08□□□□□ -0.48
SPG11-205ENST00000558080 ABCC1P33527 1531 aa12.07□□□□□ -0.48
SPG11-205ENST00000558080 ARHGEF12Q9NZN5 1544 aa12.07□□□□□ -0.48
SPG11-205ENST00000558080 GOLGA2Q08379 1002 aa12.07□□□□□ -0.48
SPG11-205ENST00000558080 MKRN3Q13064 507 aaKnown RBP12.07□□□□□ -0.48
SPG11-205ENST00000558080 SPOCK2Q92563 424 aa12.07□□□□□ -0.48
SPG11-205ENST00000558080 ZNF777Q9ULD5 760 aaPredicted RBP12.07□□□□□ -0.48
SPG11-205ENST00000558080 MTUS2Q5JR59 1369 aa12.05□□□□□ -0.48
SPG11-205ENST00000558080 SAMD9LQ8IVG5 1584 aa12.05□□□□□ -0.48
SPG11-205ENST00000558080 KIDINS220Q9ULH0 1771 aa12.05□□□□□ -0.48
SPG11-205ENST00000558080 C9orf84Q5VXU9 1444 aa12.05□□□□□ -0.48
SPG11-205ENST00000558080 TRAPPC8Q9Y2L5 1435 aa12.05□□□□□ -0.48
SPG11-205ENST00000558080 ABCA6Q8N139 1617 aa12.05□□□□□ -0.48
SPG11-205ENST00000558080 CDAN1Q8IWY9 1227 aa12.05□□□□□ -0.48
SPG11-205ENST00000558080 GPATCH8Q9UKJ3 1502 aaKnown RBP12.05□□□□□ -0.48
SPG11-205ENST00000558080 DIP2CQ9Y2E4 1556 aa12.05□□□□□ -0.48
SPG11-205ENST00000558080 SNPHO15079 494 aa12.03□□□□□ -0.48
SPG11-205ENST00000558080 PDAP1Q13442 181 aaKnown RBP12.03□□□□□ -0.48
SPG11-205ENST00000558080 CCNB3Q8WWL7 1395 aa12.03□□□□□ -0.48
SPG11-205ENST00000558080 SYCP2Q9BX26 1530 aa12.02□□□□□ -0.48
SPG11-205ENST00000558080 HNRNPMP52272 730 aaKnown RBP eCLIP12.02□□□□□ -0.49
SPG11-205ENST00000558080 ILDR1Q86SU0 546 aaPredicted RBP12.02□□□□□ -0.49
SPG11-205ENST00000558080 L3MBTL3Q96JM7 780 aaPredicted RBP12.02□□□□□ -0.49
SPG11-205ENST00000558080 TMEM121BQ9BXQ6 578 aaPredicted RBP12.02□□□□□ -0.49
SPG11-205ENST00000558080 MLH3Q9UHC1 1453 aa12.02□□□□□ -0.49
SPG11-205ENST00000558080 EHBP1L1Q8N3D4 1523 aa12.01□□□□□ -0.49
SPG11-205ENST00000558080 SETD1BQ9UPS6 1966 aaKnown RBP12.01□□□□□ -0.49
SPG11-205ENST00000558080 TIAM1Q13009 1591 aa12.01□□□□□ -0.49
SPG11-205ENST00000558080 SUPT6HQ7KZ85 1726 aaKnown RBP12.01□□□□□ -0.49
SPG11-205ENST00000558080 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.01□□□□□ -0.49
SPG11-205ENST00000558080 CFDP1Q9UEE9 299 aaPredicted RBP12.01□□□□□ -0.49
SPG11-205ENST00000558080 CIZ1Q9ULV3 898 aaPredicted RBP12□□□□□ -0.49
SPG11-205ENST00000558080 C3orf67Q6ZVT6 689 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms