RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 IPO9Q96P70 1041 aaKnown RBP16.59■□□□□ 0.25
LDLR-205ENST00000557933 ST20-MTHFSA0A0A6YYL1 179 aa16.59■□□□□ 0.25
LDLR-205ENST00000557933 ADGBQ8N7X0 1667 aa16.58■□□□□ 0.25
LDLR-205ENST00000557933 SHANK2Q9UPX8 1470 aa16.58■□□□□ 0.24
LDLR-205ENST00000557933 DHX29Q7Z478 1369 aaKnown RBP16.58■□□□□ 0.24
LDLR-205ENST00000557933 PNISRQ8TF01 805 aaKnown RBP16.57■□□□□ 0.24
LDLR-205ENST00000557933 CAMSAP2Q08AD1 1489 aa16.57■□□□□ 0.24
LDLR-205ENST00000557933 RGL3Q3MIN7 710 aa16.56■□□□□ 0.24
LDLR-205ENST00000557933 ANO8Q9HCE9 1232 aaPredicted RBP16.56■□□□□ 0.24
LDLR-205ENST00000557933 CFDP1Q9UEE9 299 aaPredicted RBP16.56■□□□□ 0.24
LDLR-205ENST00000557933 SLC4A3P48751 1232 aa16.56■□□□□ 0.24
LDLR-205ENST00000557933 RPRD2Q5VT52 1461 aaKnown RBP16.55■□□□□ 0.24
LDLR-205ENST00000557933 TEX14Q8IWB6 1497 aa16.55■□□□□ 0.24
LDLR-205ENST00000557933 PLEKHH2Q8IVE3 1493 aa16.55■□□□□ 0.24
LDLR-205ENST00000557933 SPATA31E1Q6ZUB1 1445 aa16.55■□□□□ 0.24
LDLR-205ENST00000557933 GLI2P10070 1586 aa16.54■□□□□ 0.24
LDLR-205ENST00000557933 MAST1Q9Y2H9 1570 aa16.54■□□□□ 0.24
LDLR-205ENST00000557933 CC2D1BQ5T0F9 858 aaKnown RBP16.54■□□□□ 0.24
LDLR-205ENST00000557933 DCAF11Q8TEB1 546 aa16.54■□□□□ 0.24
LDLR-205ENST00000557933 ABCC5O15440 1437 aa16.54■□□□□ 0.24
LDLR-205ENST00000557933 ROCK1Q13464 1354 aa16.54■□□□□ 0.24
LDLR-205ENST00000557933 CFAP74Q9C0B2 1584 aa16.54■□□□□ 0.24
LDLR-205ENST00000557933 ADGRL2O95490 1459 aa16.53■□□□□ 0.24
LDLR-205ENST00000557933 DAPK1P53355 1430 aa16.53■□□□□ 0.24
LDLR-205ENST00000557933 SMG6Q86US8 1419 aaKnown RBP16.53■□□□□ 0.24
LDLR-205ENST00000557933 SAMD9LQ8IVG5 1584 aa16.53■□□□□ 0.24
LDLR-205ENST00000557933 ASXL2Q76L83 1435 aa16.52■□□□□ 0.24
LDLR-205ENST00000557933 PLCH2O75038 1416 aa16.52■□□□□ 0.24
LDLR-205ENST00000557933 KIAA1107Q9UPP5 1409 aa16.52■□□□□ 0.23
LDLR-205ENST00000557933 NEFMP07197 916 aa16.5■□□□□ 0.23
LDLR-205ENST00000557933 RRP1P56182 461 aaKnown RBP16.49■□□□□ 0.23
LDLR-205ENST00000557933 RCAN3Q9UKA8 241 aa16.48■□□□□ 0.23
LDLR-205ENST00000557933 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.48■□□□□ 0.23
LDLR-205ENST00000557933 BCORL1Q5H9F3 1711 aa16.48■□□□□ 0.23
LDLR-205ENST00000557933 ABCC1P33527 1531 aa16.48■□□□□ 0.23
LDLR-205ENST00000557933 MBD5Q9P267 1494 aa16.47■□□□□ 0.23
LDLR-205ENST00000557933 PDE4AP27815 886 aa16.47■□□□□ 0.23
LDLR-205ENST00000557933 MAP3K4Q9Y6R4 1608 aa16.47■□□□□ 0.23
LDLR-205ENST00000557933 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.46■□□□□ 0.237e-10■■□□□ 13.2
LDLR-205ENST00000557933 PLXNC1O60486 1568 aa16.45■□□□□ 0.22
LDLR-205ENST00000557933 ARHGAP5Q13017 1502 aa16.45■□□□□ 0.22
LDLR-205ENST00000557933 RSPH4AQ5TD94 716 aa16.45■□□□□ 0.22
LDLR-205ENST00000557933 NUP155O75694 1391 aa16.45■□□□□ 0.22
LDLR-205ENST00000557933 NBPF1Q3BBV0 1214 aa16.44■□□□□ 0.22
LDLR-205ENST00000557933 C20orf194Q5TEA3 1177 aa16.44■□□□□ 0.22
LDLR-205ENST00000557933 CCDC141Q6ZP82 1450 aa16.43■□□□□ 0.22
LDLR-205ENST00000557933 PZPP20742 1482 aa16.42■□□□□ 0.22
LDLR-205ENST00000557933 RNF123Q5XPI4 1314 aa16.42■□□□□ 0.22
LDLR-205ENST00000557933 NPM1P06748 294 aaKnown RBP eCLIP16.41■□□□□ 0.22
LDLR-205ENST00000557933 HNRNPMP52272 730 aaKnown RBP eCLIP16.41■□□□□ 0.22
LDLR-205ENST00000557933 CRBNQ96SW2 442 aa16.41■□□□□ 0.22
LDLR-205ENST00000557933 DIP2BQ9P265 1576 aa16.4■□□□□ 0.22
LDLR-205ENST00000557933 SYCP2Q9BX26 1530 aa16.39■□□□□ 0.21
LDLR-205ENST00000557933 MYBBP1AQ9BQG0 1328 aaKnown RBP16.38■□□□□ 0.21
LDLR-205ENST00000557933 MYT1LQ9UL68 1186 aa16.38■□□□□ 0.21
LDLR-205ENST00000557933 NEO1Q92859 1461 aa16.38■□□□□ 0.21
LDLR-205ENST00000557933 ROCK2O75116 1388 aaKnown RBP16.37■□□□□ 0.21
LDLR-205ENST00000557933 RTEL1-TNFRSF6BF6WH68 1400 aa16.36■□□□□ 0.21
LDLR-205ENST00000557933 KIF15Q9NS87 1388 aa16.35■□□□□ 0.21
LDLR-205ENST00000557933 INO80Q9ULG1 1556 aaPredicted RBP16.35■□□□□ 0.21
LDLR-205ENST00000557933 RGS3P49796 1198 aa16.35■□□□□ 0.21
LDLR-205ENST00000557933 BACH2Q9BYV9 841 aa16.35■□□□□ 0.21
LDLR-205ENST00000557933 BRPF3Q9ULD4 1205 aa16.35■□□□□ 0.21
LDLR-205ENST00000557933 C9orf84Q5VXU9 1444 aa16.35■□□□□ 0.21
LDLR-205ENST00000557933 FANCAO15360 1455 aa16.35■□□□□ 0.21
LDLR-205ENST00000557933 EFCAB2Q5VUJ9 269 aa16.34■□□□□ 0.21
LDLR-205ENST00000557933 KDM5DQ9BY66 1539 aa16.34■□□□□ 0.21
LDLR-205ENST00000557933 ARHGEF12Q9NZN5 1544 aa16.34■□□□□ 0.21
LDLR-205ENST00000557933 KDM5CP41229 1560 aa16.33■□□□□ 0.2
LDLR-205ENST00000557933 ANKRD50Q9ULJ7 1429 aa16.33■□□□□ 0.2
LDLR-205ENST00000557933 ANKRD30AQ9BXX3 1397 aa16.32■□□□□ 0.2
LDLR-205ENST00000557933 PANK3Q9H999 370 aa16.32■□□□□ 0.2
LDLR-205ENST00000557933 PPRC1Q5VV67 1664 aaKnown RBP16.31■□□□□ 0.2
LDLR-205ENST00000557933 KIF13AQ9H1H9 1805 aa16.31■□□□□ 0.2
LDLR-205ENST00000557933 NLRP13Q86W25 1043 aa16.31■□□□□ 0.2
LDLR-205ENST00000557933 ZFYVE16Q7Z3T8 1539 aa16.31■□□□□ 0.2
LDLR-205ENST00000557933 TCERG1O14776 1098 aaKnown RBP16.3■□□□□ 0.2
LDLR-205ENST00000557933 CD109Q6YHK3 1445 aa16.3■□□□□ 0.2
LDLR-205ENST00000557933 TSPY4P0CV99 314 aa16.29■□□□□ 0.2
LDLR-205ENST00000557933 TSPY10P0CW01 314 aa16.29■□□□□ 0.2
LDLR-205ENST00000557933 CCDC146Q8IYE0 955 aa16.29■□□□□ 0.2
LDLR-205ENST00000557933 UNC13BO14795 1591 aa16.29■□□□□ 0.2
LDLR-205ENST00000557933 DUOX2Q9NRD8 1548 aa16.29■□□□□ 0.2
LDLR-205ENST00000557933 EIF2AK4Q9P2K8 1649 aaKnown RBP16.29■□□□□ 0.2
LDLR-205ENST00000557933 PRKCSHP14314 528 aaPredicted RBP16.28■□□□□ 0.2
LDLR-205ENST00000557933 RALBP1Q15311 655 aa16.28■□□□□ 0.2
LDLR-205ENST00000557933 LRPPRCP42704 1394 aaKnown RBP16.28■□□□□ 0.2
LDLR-205ENST00000557933 KTN1Q86UP2 1357 aaKnown RBP16.28■□□□□ 0.2
LDLR-205ENST00000557933 ADAMTS8Q9UP79 889 aa16.28■□□□□ 0.2
LDLR-205ENST00000557933 ADGRL1O94910 1474 aa16.27■□□□□ 0.2
LDLR-205ENST00000557933 CYB5RLQ6IPT4 315 aa16.27■□□□□ 0.19
LDLR-205ENST00000557933 ARXQ96QS3 562 aa16.27■□□□□ 0.19
LDLR-205ENST00000557933 BRD4O60885 1362 aaPredicted RBP16.26■□□□□ 0.19
LDLR-205ENST00000557933 ERBINQ96RT1 1412 aa16.26■□□□□ 0.19
LDLR-205ENST00000557933 ZNF518AQ6AHZ1 1483 aa16.26■□□□□ 0.19
LDLR-205ENST00000557933 MAGI2Q86UL8 1455 aa16.26■□□□□ 0.19
LDLR-205ENST00000557933 RICTORQ6R327 1708 aa16.25■□□□□ 0.19
LDLR-205ENST00000557933 DISP3Q9P2K9 1392 aa16.25■□□□□ 0.19
LDLR-205ENST00000557933 ATP7AQ04656 1500 aa16.24■□□□□ 0.19
LDLR-205ENST00000557933 ZMYM4Q5VZL5 1548 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms