RNA–Protein interactions for RNA: ENST00000557845.1

NEDD4-212, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 2

Gene NEDD4, Length 374 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-212ENST00000557845 SHANK2Q9UPX8 1470 aa25.91■■□□□ 1.74
NEDD4-212ENST00000557845 DNMT1P26358 1616 aaKnown RBP25.9■■□□□ 1.74
NEDD4-212ENST00000557845 KDM5DQ9BY66 1539 aa25.89■■□□□ 1.74
NEDD4-212ENST00000557845 FAM135AQ9P2D6 1515 aa25.89■■□□□ 1.74
NEDD4-212ENST00000557845 DUOX2Q9NRD8 1548 aa25.88■■□□□ 1.73
NEDD4-212ENST00000557845 RRP7BPQ9NSQ0 103 aa25.88■■□□□ 1.73
NEDD4-212ENST00000557845 DMRT2Q9Y5R5 561 aa25.88■■□□□ 1.73
NEDD4-212ENST00000557845 EIF2AK4Q9P2K8 1649 aaKnown RBP25.88■■□□□ 1.73
NEDD4-212ENST00000557845 RNF17Q9BXT8 1623 aaKnown RBP25.86■■□□□ 1.73
NEDD4-212ENST00000557845 KIF15Q9NS87 1388 aa25.85■■□□□ 1.73
NEDD4-212ENST00000557845 FBXO31Q5XUX0 539 aaPredicted RBP25.85■■□□□ 1.73
NEDD4-212ENST00000557845 FAM50AQ14320 339 aaKnown RBP25.84■■□□□ 1.73
NEDD4-212ENST00000557845 CHIC2Q9UKJ5 165 aa25.84■■□□□ 1.73
NEDD4-212ENST00000557845 MYO3AQ8NEV4 1616 aa25.84■■□□□ 1.73
NEDD4-212ENST00000557845 PZPP20742 1482 aa25.82■■□□□ 1.72
NEDD4-212ENST00000557845 ANKRD30AQ9BXX3 1397 aa25.81■■□□□ 1.72
NEDD4-212ENST00000557845 CAMSAP1Q5T5Y3 1602 aa25.8■■□□□ 1.72
NEDD4-212ENST00000557845 ZNF142P52746 1687 aaPredicted RBP25.8■■□□□ 1.72
NEDD4-212ENST00000557845 CEP170BQ9Y4F5 1589 aaPredicted RBP25.79■■□□□ 1.72
NEDD4-212ENST00000557845 NCOA1Q15788 1441 aa25.79■■□□□ 1.72
NEDD4-212ENST00000557845 ERBINQ96RT1 1412 aa25.79■■□□□ 1.72
NEDD4-212ENST00000557845 MROH1Q8NDA8 1641 aa25.78■■□□□ 1.72
NEDD4-212ENST00000557845 ABCC3O15438 1527 aa25.78■■□□□ 1.72
NEDD4-212ENST00000557845 ZC3H13Q5T200 1668 aaKnown RBP25.77■■□□□ 1.72
NEDD4-212ENST00000557845 PPARGC1BQ86YN6 1023 aaKnown RBP25.77■■□□□ 1.72
NEDD4-212ENST00000557845 TNRQ92752 1358 aa25.77■■□□□ 1.72
NEDD4-212ENST00000557845 PTPRTO14522 1441 aa25.77■■□□□ 1.72
NEDD4-212ENST00000557845 A2ML1A8K2U0 1454 aa25.75■■□□□ 1.71
NEDD4-212ENST00000557845 NCKAP5LQ9HCH0 1330 aa25.73■■□□□ 1.71
NEDD4-212ENST00000557845 FBXO41Q8TF61 875 aa25.73■■□□□ 1.71
NEDD4-212ENST00000557845 CEP152O94986 1710 aa25.73■■□□□ 1.71
NEDD4-212ENST00000557845 ADGRL2O95490 1459 aa25.72■■□□□ 1.71
NEDD4-212ENST00000557845 CERKQ8TCT0 537 aa25.71■■□□□ 1.71
NEDD4-212ENST00000557845 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.71■■□□□ 1.71
NEDD4-212ENST00000557845 PLA2R1Q13018 1463 aa25.71■■□□□ 1.71
NEDD4-212ENST00000557845 PKD2Q13563 968 aa25.7■■□□□ 1.7
NEDD4-212ENST00000557845 PRDM15P57071 1507 aaPredicted RBP25.69■■□□□ 1.7
NEDD4-212ENST00000557845 CFAP65Q6ZU64 1925 aaKnown RBP25.69■■□□□ 1.7
NEDD4-212ENST00000557845 DEPDC5O75140 1603 aa25.68■■□□□ 1.7
NEDD4-212ENST00000557845 NLRP1Q9C000 1473 aa25.66■■□□□ 1.7
NEDD4-212ENST00000557845 SPATA31D1Q6ZQQ2 1576 aa25.66■■□□□ 1.7
NEDD4-212ENST00000557845 KANK1Q14678 1352 aa25.66■■□□□ 1.7
NEDD4-212ENST00000557845 THEMISQ8N1K5 641 aaPredicted RBP25.64■■□□□ 1.7
NEDD4-212ENST00000557845 ARHGAP31Q2M1Z3 1444 aa25.63■■□□□ 1.69
NEDD4-212ENST00000557845 ERVK-7P63135 1459 aa25.63■■□□□ 1.69
NEDD4-212ENST00000557845 ANKRD50Q9ULJ7 1429 aa25.61■■□□□ 1.69
NEDD4-212ENST00000557845 UGGT1Q9NYU2 1555 aa25.61■■□□□ 1.69
NEDD4-212ENST00000557845 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.6■■□□□ 1.69
NEDD4-212ENST00000557845 VWDEQ8N2E2 1590 aa25.58■■□□□ 1.69
NEDD4-212ENST00000557845 LMTK2Q8IWU2 1503 aa25.58■■□□□ 1.68
NEDD4-212ENST00000557845 ITGAEP38570 1179 aa25.57■■□□□ 1.68
NEDD4-212ENST00000557845 ANKLE2Q86XL3 938 aa25.57■■□□□ 1.68
NEDD4-212ENST00000557845 ROCK1Q13464 1354 aa25.56■■□□□ 1.68
NEDD4-212ENST00000557845 LTBP4Q8N2S1 1624 aa25.55■■□□□ 1.68
NEDD4-212ENST00000557845 POLR1AO95602 1720 aaPredicted RBP25.55■■□□□ 1.68
NEDD4-212ENST00000557845 ZNF335Q9H4Z2 1342 aaPredicted RBP25.51■■□□□ 1.67
NEDD4-212ENST00000557845 NEURL4Q96JN8 1562 aa25.5■■□□□ 1.67
NEDD4-212ENST00000557845 UBR1Q8IWV7 1749 aa25.49■■□□□ 1.67
NEDD4-212ENST00000557845 RRBP1Q9P2E9 1410 aaKnown RBP25.47■■□□□ 1.67
NEDD4-212ENST00000557845 EFCAB6Q5THR3 1501 aa25.47■■□□□ 1.67
NEDD4-212ENST00000557845 IDI1Q13907 227 aa25.45■■□□□ 1.66
NEDD4-212ENST00000557845 MED14O60244 1454 aa25.45■■□□□ 1.66
NEDD4-212ENST00000557845 UNC13BO14795 1591 aa25.44■■□□□ 1.66
NEDD4-212ENST00000557845 NPHP4O75161 1426 aaPredicted RBP25.44■■□□□ 1.66
NEDD4-212ENST00000557845 NOS1P29475 1434 aa25.43■■□□□ 1.66
NEDD4-212ENST00000557845 PIK3C2BO00750 1634 aa25.42■■□□□ 1.66
NEDD4-212ENST00000557845 STAG3Q9UJ98 1225 aa25.42■■□□□ 1.66
NEDD4-212ENST00000557845 TET3O43151 1660 aa25.41■■□□□ 1.66
NEDD4-212ENST00000557845 IQSEC2Q5JU85 1478 aa25.4■■□□□ 1.66
NEDD4-212ENST00000557845 RPRD2Q5VT52 1461 aaKnown RBP25.4■■□□□ 1.66
NEDD4-212ENST00000557845 SYNMO15061 1565 aa25.4■■□□□ 1.66
NEDD4-212ENST00000557845 TXNDC2Q86VQ3 553 aa25.39■■□□□ 1.66
NEDD4-212ENST00000557845 SLC52A1Q9NWF4 448 aa25.39■■□□□ 1.66
NEDD4-212ENST00000557845 IQGAP1P46940 1657 aa25.39■■□□□ 1.65
NEDD4-212ENST00000557845 SLIT1O75093 1534 aa25.38■■□□□ 1.65
NEDD4-212ENST00000557845 LTKP29376 864 aa25.38■■□□□ 1.65
NEDD4-212ENST00000557845 ARHGAP23Q9P227 1491 aa25.38■■□□□ 1.65
NEDD4-212ENST00000557845 GCC2Q8IWJ2 1684 aa25.38■■□□□ 1.65
NEDD4-212ENST00000557845 KDM5AP29375 1690 aaKnown RBP25.36■■□□□ 1.65
NEDD4-212ENST00000557845 NUP155O75694 1391 aa25.36■■□□□ 1.65
NEDD4-212ENST00000557845 EID1Q9Y6B2 187 aa25.36■■□□□ 1.65
NEDD4-212ENST00000557845 SCAF11Q99590 1463 aaKnown RBP25.35■■□□□ 1.65
NEDD4-212ENST00000557845 IQGAP3Q86VI3 1631 aa25.35■■□□□ 1.65
NEDD4-212ENST00000557845 TMEM2Q9UHN6 1383 aa25.34■■□□□ 1.65
NEDD4-212ENST00000557845 E9PCH4 1651 aa25.32■■□□□ 1.64
NEDD4-212ENST00000557845 CPS1P31327 1500 aa25.3■■□□□ 1.64
NEDD4-212ENST00000557845 NAIPQ13075 1403 aa25.28■■□□□ 1.64
NEDD4-212ENST00000557845 ADGRB3O60242 1522 aa25.27■■□□□ 1.64
NEDD4-212ENST00000557845 UBAP1LF5GYI3 381 aa25.25■■□□□ 1.63
NEDD4-212ENST00000557845 MYO5BQ9ULV0 1848 aa25.23■■□□□ 1.63
NEDD4-212ENST00000557845 STRCP1A6NGW2 1772 aa25.23■■□□□ 1.63
NEDD4-212ENST00000557845 TMEM131LA2VDJ0 1609 aa25.22■■□□□ 1.63
NEDD4-212ENST00000557845 CHGAP10645 457 aaKnown RBP25.2■■□□□ 1.62
NEDD4-212ENST00000557845 HFM1A2PYH4 1435 aa25.2■■□□□ 1.62
NEDD4-212ENST00000557845 HDGFP51858 240 aaKnown RBP25.19■■□□□ 1.62
NEDD4-212ENST00000557845 ZFYVE9O95405 1425 aa25.16■■□□□ 1.62
NEDD4-212ENST00000557845 SLC26A8Q96RN1 970 aa25.16■■□□□ 1.62
NEDD4-212ENST00000557845 TOM1O60784 492 aa25.15■■□□□ 1.62
NEDD4-212ENST00000557845 TRIM52Q96A61 297 aa25.15■■□□□ 1.62
NEDD4-212ENST00000557845 LRRC7Q96NW7 1537 aa25.15■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms