RNA–Protein interactions for RNA: ENST00000557588.5

ABCD4-228, Transcript of ATP binding cassette subfamily D member 4, humanhuman

TSL 3 BASIC

Gene ABCD4, Length 763 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD4-228ENST00000557588 CPS1P31327 1500 aa29.8■■■□□ 2.36
ABCD4-228ENST00000557588 KDM5DQ9BY66 1539 aa29.8■■■□□ 2.36
ABCD4-228ENST00000557588 DHX29Q7Z478 1369 aaKnown RBP29.79■■■□□ 2.36
ABCD4-228ENST00000557588 CEP162Q5TB80 1403 aa29.79■■■□□ 2.36
ABCD4-228ENST00000557588 PZPP20742 1482 aa29.78■■■□□ 2.36
ABCD4-228ENST00000557588 TNRQ92752 1358 aa29.76■■■□□ 2.35
ABCD4-228ENST00000557588 CCDC141Q6ZP82 1450 aa29.74■■■□□ 2.35
ABCD4-228ENST00000557588 SHANK2Q9UPX8 1470 aa29.72■■■□□ 2.35
ABCD4-228ENST00000557588 MED1Q15648 1581 aaPredicted RBP29.72■■■□□ 2.35
ABCD4-228ENST00000557588 VWDEQ8N2E2 1590 aa29.69■■■□□ 2.34
ABCD4-228ENST00000557588 CAMSAP2Q08AD1 1489 aa29.68■■■□□ 2.34
ABCD4-228ENST00000557588 DEPDC5O75140 1603 aa29.67■■■□□ 2.34
ABCD4-228ENST00000557588 NLRP1Q9C000 1473 aa29.67■■■□□ 2.34
ABCD4-228ENST00000557588 FBXO31Q5XUX0 539 aaPredicted RBP29.66■■■□□ 2.34
ABCD4-228ENST00000557588 KIF3BO15066 747 aa29.65■■■□□ 2.34
ABCD4-228ENST00000557588 MED14O60244 1454 aa29.64■■■□□ 2.34
ABCD4-228ENST00000557588 HSPA1LP34931 641 aa29.64■■■□□ 2.34
ABCD4-228ENST00000557588 NCOA2Q15596 1464 aa29.63■■■□□ 2.33
ABCD4-228ENST00000557588 ARHGEF5Q12774 1597 aa29.63■■■□□ 2.33
ABCD4-228ENST00000557588 UGGT1Q9NYU2 1555 aa29.62■■■□□ 2.33
ABCD4-228ENST00000557588 TOM1O60784 492 aa29.62■■■□□ 2.33
ABCD4-228ENST00000557588 ALKQ9UM73 1620 aa29.61■■■□□ 2.33
ABCD4-228ENST00000557588 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.61■■■□□ 2.33
ABCD4-228ENST00000557588 MIA2Q96PC5 1412 aa29.61■■■□□ 2.33
ABCD4-228ENST00000557588 RNF17Q9BXT8 1623 aaKnown RBP29.6■■■□□ 2.33
ABCD4-228ENST00000557588 SCAF1Q9H7N4 1312 aaKnown RBP29.59■■■□□ 2.33
ABCD4-228ENST00000557588 WASHC2CQ9Y4E1 1318 aa29.59■■■□□ 2.33
ABCD4-228ENST00000557588 NPHP4O75161 1426 aaPredicted RBP29.59■■■□□ 2.33
ABCD4-228ENST00000557588 IQGAP1P46940 1657 aa29.58■■■□□ 2.33
ABCD4-228ENST00000557588 PIP4K2BP78356 416 aa29.58■■■□□ 2.33
ABCD4-228ENST00000557588 ZC3H13Q5T200 1668 aaKnown RBP29.58■■■□□ 2.33
ABCD4-228ENST00000557588 RSPH4AQ5TD94 716 aa29.58■■■□□ 2.33
ABCD4-228ENST00000557588 ANKLE2Q86XL3 938 aa29.58■■■□□ 2.33
ABCD4-228ENST00000557588 THEMISQ8N1K5 641 aaPredicted RBP29.56■■■□□ 2.32
ABCD4-228ENST00000557588 ABCC3O15438 1527 aa29.53■■■□□ 2.32
ABCD4-228ENST00000557588 SYNMO15061 1565 aa29.52■■■□□ 2.32
ABCD4-228ENST00000557588 EIF2AK4Q9P2K8 1649 aaKnown RBP29.51■■■□□ 2.31
ABCD4-228ENST00000557588 MAST1Q9Y2H9 1570 aa29.51■■■□□ 2.31
ABCD4-228ENST00000557588 STRCP1A6NGW2 1772 aa29.5■■■□□ 2.31
ABCD4-228ENST00000557588 MROH1Q8NDA8 1641 aa29.46■■■□□ 2.31
ABCD4-228ENST00000557588 ERVK-7P63135 1459 aa29.46■■■□□ 2.31
ABCD4-228ENST00000557588 LRRC7Q96NW7 1537 aa29.45■■■□□ 2.31
ABCD4-228ENST00000557588 TSPY4P0CV99 314 aa29.42■■■□□ 2.3
ABCD4-228ENST00000557588 TSPY10P0CW01 314 aa29.42■■■□□ 2.3
ABCD4-228ENST00000557588 UBR1Q8IWV7 1749 aa29.42■■■□□ 2.3
ABCD4-228ENST00000557588 CEP152O94986 1710 aa29.39■■■□□ 2.3
ABCD4-228ENST00000557588 LRRC9Q6ZRR7 1453 aa29.36■■■□□ 2.29
ABCD4-228ENST00000557588 PHF23Q9BUL5 403 aaPredicted RBP29.35■■■□□ 2.29
ABCD4-228ENST00000557588 SCAF11Q99590 1463 aaKnown RBP29.35■■■□□ 2.29
ABCD4-228ENST00000557588 SLIT1O75093 1534 aa29.32■■■□□ 2.28
ABCD4-228ENST00000557588 ARHGAP23Q9P227 1491 aa29.32■■■□□ 2.28
ABCD4-228ENST00000557588 PRDM15P57071 1507 aaPredicted RBP29.3■■■□□ 2.28
ABCD4-228ENST00000557588 DUOX2Q9NRD8 1548 aa29.3■■■□□ 2.28
ABCD4-228ENST00000557588 VPS8Q8N3P4 1428 aa29.28■■■□□ 2.28
ABCD4-228ENST00000557588 XIRP1Q702N8 1843 aaKnown RBP29.27■■■□□ 2.28
ABCD4-228ENST00000557588 ARHGAP31Q2M1Z3 1444 aa29.26■■■□□ 2.27
ABCD4-228ENST00000557588 MYOM3Q5VTT5 1437 aa29.25■■■□□ 2.27
ABCD4-228ENST00000557588 CFAP65Q6ZU64 1925 aaKnown RBP29.24■■■□□ 2.27
ABCD4-228ENST00000557588 MAP3K1Q13233 1512 aa29.24■■■□□ 2.27
ABCD4-228ENST00000557588 CROCC2H7BZ55 1655 aa29.22■■■□□ 2.27
ABCD4-228ENST00000557588 ERBINQ96RT1 1412 aa29.2■■■□□ 2.27
ABCD4-228ENST00000557588 PIK3C2BO00750 1634 aa29.2■■■□□ 2.26
ABCD4-228ENST00000557588 LTKP29376 864 aa29.19■■■□□ 2.26
ABCD4-228ENST00000557588 SENP3Q9H4L4 574 aaPredicted RBP29.18■■■□□ 2.26
ABCD4-228ENST00000557588 KDM5AP29375 1690 aaKnown RBP29.18■■■□□ 2.26
ABCD4-228ENST00000557588 KIF15Q9NS87 1388 aa29.16■■■□□ 2.26
ABCD4-228ENST00000557588 TXNDC2Q86VQ3 553 aa29.15■■■□□ 2.26
ABCD4-228ENST00000557588 TMEM2Q9UHN6 1383 aa29.13■■■□□ 2.25
ABCD4-228ENST00000557588 KANK4Q5T7N3 995 aaPredicted RBP29.12■■■□□ 2.25
ABCD4-228ENST00000557588 FAM135BQ49AJ0 1406 aa29.11■■■□□ 2.25
ABCD4-228ENST00000557588 RGS17Q9UGC6 210 aaPredicted RBP29.1■■■□□ 2.25
ABCD4-228ENST00000557588 EID1Q9Y6B2 187 aa29.1■■■□□ 2.25
ABCD4-228ENST00000557588 ABCC5O15440 1437 aa29.1■■■□□ 2.25
ABCD4-228ENST00000557588 EFCAB6Q5THR3 1501 aa29.1■■■□□ 2.25
ABCD4-228ENST00000557588 LMTK2Q8IWU2 1503 aa29.09■■■□□ 2.25
ABCD4-228ENST00000557588 PTPN23Q9H3S7 1636 aa29.07■■■□□ 2.24
ABCD4-228ENST00000557588 TMEM94Q12767 1356 aa29.04■■■□□ 2.24
ABCD4-228ENST00000557588 TET3O43151 1660 aa29.04■■■□□ 2.24
ABCD4-228ENST00000557588 ROBO1Q9Y6N7 1651 aa29.04■■■□□ 2.24
ABCD4-228ENST00000557588 NWD1Q149M9 1564 aa29.03■■■□□ 2.24
ABCD4-228ENST00000557588 DAPK1P53355 1430 aa29.03■■■□□ 2.24
ABCD4-228ENST00000557588 KANK1Q14678 1352 aa29.02■■■□□ 2.24
ABCD4-228ENST00000557588 ADGRB3O60242 1522 aa29■■■□□ 2.23
ABCD4-228ENST00000557588 NKTRP30414 1462 aaKnown RBP29■■■□□ 2.23
ABCD4-228ENST00000557588 RRP7BPQ9NSQ0 103 aa29■■■□□ 2.23
ABCD4-228ENST00000557588 NOS1P29475 1434 aa28.97■■■□□ 2.23
ABCD4-228ENST00000557588 KCNA6P17658 529 aa28.97■■■□□ 2.23
ABCD4-228ENST00000557588 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.97■■■□□ 2.233e-10■■□□□ 14.5
ABCD4-228ENST00000557588 STAG3Q9UJ98 1225 aa28.96■■■□□ 2.23
ABCD4-228ENST00000557588 IDI1Q13907 227 aa28.94■■■□□ 2.22
ABCD4-228ENST00000557588 FGD6Q6ZV73 1430 aa28.93■■■□□ 2.22
ABCD4-228ENST00000557588 ANKRD30AQ9BXX3 1397 aa28.9■■■□□ 2.22
ABCD4-228ENST00000557588 POTEAQ6S8J7 498 aa28.89■■■□□ 2.22
ABCD4-228ENST00000557588 SLC26A8Q96RN1 970 aa28.89■■■□□ 2.22
ABCD4-228ENST00000557588 PROSER2Q86WR7 435 aaPredicted RBP28.87■■■□□ 2.21
ABCD4-228ENST00000557588 PHLPP1O60346 1717 aa28.86■■■□□ 2.21
ABCD4-228ENST00000557588 RPRD2Q5VT52 1461 aaKnown RBP28.85■■■□□ 2.21
ABCD4-228ENST00000557588 MSH6P52701 1360 aa28.85■■■□□ 2.21
ABCD4-228ENST00000557588 ADGRL2O95490 1459 aa28.85■■■□□ 2.21
ABCD4-228ENST00000557588 LOC105371045A0A1W2PR82 267 aa28.84■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms