RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 MTUS2Q5JR59 1369 aa13.36□□□□□ -0.27
CCDC88C-214ENST00000557507 ALKQ9UM73 1620 aa13.36□□□□□ -0.27
CCDC88C-214ENST00000557507 CPS1P31327 1500 aa13.36□□□□□ -0.27
CCDC88C-214ENST00000557507 FAM135AQ9P2D6 1515 aa13.36□□□□□ -0.27
CCDC88C-214ENST00000557507 ZNF644Q9H582 1327 aaPredicted RBP13.36□□□□□ -0.27
CCDC88C-214ENST00000557507 CFAP65Q6ZU64 1925 aaKnown RBP13.35□□□□□ -0.27
CCDC88C-214ENST00000557507 PZPP20742 1482 aa13.35□□□□□ -0.27
CCDC88C-214ENST00000557507 DEPDC5O75140 1603 aa13.35□□□□□ -0.27
CCDC88C-214ENST00000557507 IQGAP1P46940 1657 aa13.34□□□□□ -0.27
CCDC88C-214ENST00000557507 RTEL1-TNFRSF6BF6WH68 1400 aa13.34□□□□□ -0.27
CCDC88C-214ENST00000557507 SHANK2Q9UPX8 1470 aa13.33□□□□□ -0.28
CCDC88C-214ENST00000557507 TNRQ92752 1358 aa13.32□□□□□ -0.28
CCDC88C-214ENST00000557507 CAMSAP2Q08AD1 1489 aa13.32□□□□□ -0.28
CCDC88C-214ENST00000557507 CCDC141Q6ZP82 1450 aa13.32□□□□□ -0.28
CCDC88C-214ENST00000557507 DHX29Q7Z478 1369 aaKnown RBP13.32□□□□□ -0.28
CCDC88C-214ENST00000557507 RNF17Q9BXT8 1623 aaKnown RBP13.31□□□□□ -0.28
CCDC88C-214ENST00000557507 CEP162Q5TB80 1403 aa13.31□□□□□ -0.28
CCDC88C-214ENST00000557507 ZC3H13Q5T200 1668 aaKnown RBP13.31□□□□□ -0.28
CCDC88C-214ENST00000557507 CEP152O94986 1710 aa13.31□□□□□ -0.28
CCDC88C-214ENST00000557507 HSPA1LP34931 641 aa13.31□□□□□ -0.28
CCDC88C-214ENST00000557507 UGGT1Q9NYU2 1555 aa13.3□□□□□ -0.28
CCDC88C-214ENST00000557507 FBXO31Q5XUX0 539 aaPredicted RBP13.3□□□□□ -0.28
CCDC88C-214ENST00000557507 XIRP1Q702N8 1843 aaKnown RBP13.29□□□□□ -0.28
CCDC88C-214ENST00000557507 SYNMO15061 1565 aa13.29□□□□□ -0.28
CCDC88C-214ENST00000557507 ARHGEF5Q12774 1597 aa13.29□□□□□ -0.28
CCDC88C-214ENST00000557507 SCAF1Q9H7N4 1312 aaKnown RBP13.29□□□□□ -0.28
CCDC88C-214ENST00000557507 MED14O60244 1454 aa13.29□□□□□ -0.28
CCDC88C-214ENST00000557507 UBR1Q8IWV7 1749 aa13.28□□□□□ -0.28
CCDC88C-214ENST00000557507 PIP4K2BP78356 416 aa13.28□□□□□ -0.28
CCDC88C-214ENST00000557507 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.28□□□□□ -0.28
CCDC88C-214ENST00000557507 NCOA2Q15596 1464 aa13.28□□□□□ -0.28
CCDC88C-214ENST00000557507 NLRP1Q9C000 1473 aa13.28□□□□□ -0.28
CCDC88C-214ENST00000557507 MROH1Q8NDA8 1641 aa13.28□□□□□ -0.28
CCDC88C-214ENST00000557507 KIF3BO15066 747 aa13.27□□□□□ -0.29
CCDC88C-214ENST00000557507 NPHP4O75161 1426 aaPredicted RBP13.27□□□□□ -0.29
CCDC88C-214ENST00000557507 EIF2AK4Q9P2K8 1649 aaKnown RBP13.27□□□□□ -0.29
CCDC88C-214ENST00000557507 ABCC3O15438 1527 aa13.26□□□□□ -0.29
CCDC88C-214ENST00000557507 MAST1Q9Y2H9 1570 aa13.25□□□□□ -0.29
CCDC88C-214ENST00000557507 MIA2Q96PC5 1412 aa13.25□□□□□ -0.29
CCDC88C-214ENST00000557507 TOM1O60784 492 aa13.24□□□□□ -0.29
CCDC88C-214ENST00000557507 LRRC7Q96NW7 1537 aa13.23□□□□□ -0.29
CCDC88C-214ENST00000557507 WASHC2CQ9Y4E1 1318 aa13.22□□□□□ -0.29
CCDC88C-214ENST00000557507 ERVK-7P63135 1459 aa13.22□□□□□ -0.29
CCDC88C-214ENST00000557507 ANKLE2Q86XL3 938 aa13.21□□□□□ -0.29
CCDC88C-214ENST00000557507 THEMISQ8N1K5 641 aaPredicted RBP13.2□□□□□ -0.3
CCDC88C-214ENST00000557507 CROCC2H7BZ55 1655 aa13.2□□□□□ -0.3
CCDC88C-214ENST00000557507 PIK3C2BO00750 1634 aa13.17□□□□□ -0.3
CCDC88C-214ENST00000557507 PHF23Q9BUL5 403 aaPredicted RBP13.16□□□□□ -0.3
CCDC88C-214ENST00000557507 SENP3Q9H4L4 574 aaPredicted RBP13.16□□□□□ -0.3
CCDC88C-214ENST00000557507 PRDM15P57071 1507 aaPredicted RBP13.16□□□□□ -0.3
CCDC88C-214ENST00000557507 SCAF11Q99590 1463 aaKnown RBP13.16□□□□□ -0.3
CCDC88C-214ENST00000557507 SLIT1O75093 1534 aa13.15□□□□□ -0.3
CCDC88C-214ENST00000557507 RSPH4AQ5TD94 716 aa13.15□□□□□ -0.3
CCDC88C-214ENST00000557507 LRRC9Q6ZRR7 1453 aa13.15□□□□□ -0.3
CCDC88C-214ENST00000557507 ARHGAP23Q9P227 1491 aa13.15□□□□□ -0.3
CCDC88C-214ENST00000557507 DUOX2Q9NRD8 1548 aa13.13□□□□□ -0.31
CCDC88C-214ENST00000557507 KDM5AP29375 1690 aaKnown RBP13.12□□□□□ -0.31
CCDC88C-214ENST00000557507 TSPY4P0CV99 314 aa13.12□□□□□ -0.31
CCDC88C-214ENST00000557507 TSPY10P0CW01 314 aa13.12□□□□□ -0.31
CCDC88C-214ENST00000557507 MYO5BQ9ULV0 1848 aa13.11□□□□□ -0.31
CCDC88C-214ENST00000557507 ROBO1Q9Y6N7 1651 aa13.11□□□□□ -0.31
CCDC88C-214ENST00000557507 SETD1AO15047 1707 aaKnown RBP13.1□□□□□ -0.31
CCDC88C-214ENST00000557507 MYOM3Q5VTT5 1437 aa13.09□□□□□ -0.31
CCDC88C-214ENST00000557507 VPS8Q8N3P4 1428 aa13.09□□□□□ -0.31
CCDC88C-214ENST00000557507 MAP3K1Q13233 1512 aa13.08□□□□□ -0.31
CCDC88C-214ENST00000557507 ARHGAP31Q2M1Z3 1444 aa13.08□□□□□ -0.32
CCDC88C-214ENST00000557507 LTKP29376 864 aa13.08□□□□□ -0.32
CCDC88C-214ENST00000557507 RGS17Q9UGC6 210 aaPredicted RBP13.08□□□□□ -0.32
CCDC88C-214ENST00000557507 PTPN23Q9H3S7 1636 aa13.07□□□□□ -0.32
CCDC88C-214ENST00000557507 EFCAB6Q5THR3 1501 aa13.06□□□□□ -0.32
CCDC88C-214ENST00000557507 NWD1Q149M9 1564 aa13.06□□□□□ -0.32
CCDC88C-214ENST00000557507 ERBINQ96RT1 1412 aa13.05□□□□□ -0.32
CCDC88C-214ENST00000557507 TET3O43151 1660 aa13.05□□□□□ -0.32
CCDC88C-214ENST00000557507 KIF15Q9NS87 1388 aa13.05□□□□□ -0.32
CCDC88C-214ENST00000557507 PHLPP1O60346 1717 aa13.05□□□□□ -0.32
CCDC88C-214ENST00000557507 TXNDC2Q86VQ3 553 aa13.04□□□□□ -0.32
CCDC88C-214ENST00000557507 CHD2O14647 1828 aaKnown RBP13.04□□□□□ -0.32
CCDC88C-214ENST00000557507 ADGRB3O60242 1522 aa13.03□□□□□ -0.32
CCDC88C-214ENST00000557507 KANK4Q5T7N3 995 aaPredicted RBP13.03□□□□□ -0.32
CCDC88C-214ENST00000557507 TMEM2Q9UHN6 1383 aa13.03□□□□□ -0.32
CCDC88C-214ENST00000557507 ABCC5O15440 1437 aa13.03□□□□□ -0.32
CCDC88C-214ENST00000557507 FAM135BQ49AJ0 1406 aa13.03□□□□□ -0.32
CCDC88C-214ENST00000557507 LMTK2Q8IWU2 1503 aa13.03□□□□□ -0.32
CCDC88C-214ENST00000557507 GCC2Q8IWJ2 1684 aa13.02□□□□□ -0.32
CCDC88C-214ENST00000557507 TMEM94Q12767 1356 aa13.01□□□□□ -0.33
CCDC88C-214ENST00000557507 NKTRP30414 1462 aaKnown RBP13□□□□□ -0.33
CCDC88C-214ENST00000557507 DAPK1P53355 1430 aa13□□□□□ -0.33
CCDC88C-214ENST00000557507 EID1Q9Y6B2 187 aa12.99□□□□□ -0.33
CCDC88C-214ENST00000557507 COL16A1Q07092 1604 aaPredicted RBP12.99□□□□□ -0.33
CCDC88C-214ENST00000557507 POTEAQ6S8J7 498 aa12.98□□□□□ -0.33
CCDC88C-214ENST00000557507 NOS1P29475 1434 aa12.97□□□□□ -0.33
CCDC88C-214ENST00000557507 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.97□□□□□ -0.331e-6■■■■□ 20.2
CCDC88C-214ENST00000557507 RRP7BPQ9NSQ0 103 aa12.97□□□□□ -0.33
CCDC88C-214ENST00000557507 RBM33Q96EV2 1170 aaKnown RBP12.96□□□□□ -0.33
CCDC88C-214ENST00000557507 KANK1Q14678 1352 aa12.95□□□□□ -0.34
CCDC88C-214ENST00000557507 KCNA6P17658 529 aa12.95□□□□□ -0.34
CCDC88C-214ENST00000557507 IDI1Q13907 227 aa12.95□□□□□ -0.34
CCDC88C-214ENST00000557507 SLC26A8Q96RN1 970 aa12.95□□□□□ -0.34
CCDC88C-214ENST00000557507 FGD6Q6ZV73 1430 aa12.95□□□□□ -0.34
CCDC88C-214ENST00000557507 TMEM131LA2VDJ0 1609 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms