RNA–Protein interactions for RNA: ENST00000557356.5

PSEN1-222, Transcript of presenilin 1, human

TSL 4

Gene PSEN1, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PSEN1-222	ENST00000557356	NPAT	Q14207	1427 aa		11.94	□□□□□ -0.5
PSEN1-222	ENST00000557356	DNMT1	P26358	1616 aa	Known RBP	11.94	□□□□□ -0.5
PSEN1-222	ENST00000557356	NCOA1	Q15788	1441 aa		11.94	□□□□□ -0.5
PSEN1-222	ENST00000557356	KANK1	Q14678	1352 aa		11.93	□□□□□ -0.5
PSEN1-222	ENST00000557356	SETD1B	Q9UPS6	1966 aa	Known RBP	11.93	□□□□□ -0.5
PSEN1-222	ENST00000557356	UHRF1BP1	Q6BDS2	1440 aa		11.93	□□□□□ -0.5
PSEN1-222	ENST00000557356	ERBIN	Q96RT1	1412 aa		11.93	□□□□□ -0.5
PSEN1-222	ENST00000557356	DMRT2	Q9Y5R5	561 aa		11.92	□□□□□ -0.5
PSEN1-222	ENST00000557356	ROCK1	Q13464	1354 aa		11.91	□□□□□ -0.5
PSEN1-222	ENST00000557356	MROH2A	A6NES4	1674 aa		11.91	□□□□□ -0.5
PSEN1-222	ENST00000557356	ADGRL2	O95490	1459 aa		11.9	□□□□□ -0.5
PSEN1-222	ENST00000557356	EIF2AK4	Q9P2K8	1649 aa	Known RBP	11.9	□□□□□ -0.5
PSEN1-222	ENST00000557356	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	11.89	□□□□□ -0.51	2e-7	■□□□□ 10.6
PSEN1-222	ENST00000557356	KDM5D	Q9BY66	1539 aa		11.89	□□□□□ -0.51
PSEN1-222	ENST00000557356	LMTK3	Q96Q04	1460 aa		11.89	□□□□□ -0.51
PSEN1-222	ENST00000557356	CROCC2	H7BZ55	1655 aa		11.88	□□□□□ -0.51
PSEN1-222	ENST00000557356	ITGAE	P38570	1179 aa		11.88	□□□□□ -0.51
PSEN1-222	ENST00000557356	PTPRK	Q15262	1439 aa		11.87	□□□□□ -0.51
PSEN1-222	ENST00000557356	RRBP1	Q9P2E9	1410 aa	Known RBP	11.87	□□□□□ -0.51
PSEN1-222	ENST00000557356	ANKRD50	Q9ULJ7	1429 aa		11.87	□□□□□ -0.51
PSEN1-222	ENST00000557356	HSPA2	P54652	639 aa		11.87	□□□□□ -0.51
PSEN1-222	ENST00000557356	C3	P01024	1663 aa		11.87	□□□□□ -0.51
PSEN1-222	ENST00000557356	CLTC	Q00610	1675 aa	Known RBP	11.86	□□□□□ -0.51
PSEN1-222	ENST00000557356	RNF17	Q9BXT8	1623 aa	Known RBP	11.86	□□□□□ -0.51
PSEN1-222	ENST00000557356	PREX1	Q8TCU6	1659 aa		11.85	□□□□□ -0.51
PSEN1-222	ENST00000557356	PZP	P20742	1482 aa		11.85	□□□□□ -0.51
PSEN1-222	ENST00000557356	TNR	Q92752	1358 aa		11.85	□□□□□ -0.51
PSEN1-222	ENST00000557356	THEMIS	Q8N1K5	641 aa	Predicted RBP	11.85	□□□□□ -0.51
PSEN1-222	ENST00000557356	ACIN1	Q9UKV3	1341 aa	Known RBP	11.85	□□□□□ -0.51
PSEN1-222	ENST00000557356	FBXO31	Q5XUX0	539 aa	Predicted RBP	11.84	□□□□□ -0.51
PSEN1-222	ENST00000557356	ARHGAP31	Q2M1Z3	1444 aa		11.84	□□□□□ -0.51
PSEN1-222	ENST00000557356	PKD2	Q13563	968 aa		11.83	□□□□□ -0.52
PSEN1-222	ENST00000557356	ZC3H13	Q5T200	1668 aa	Known RBP	11.83	□□□□□ -0.52
PSEN1-222	ENST00000557356	ABCC3	O15438	1527 aa		11.82	□□□□□ -0.52
PSEN1-222	ENST00000557356	NLRP1	Q9C000	1473 aa		11.81	□□□□□ -0.52
PSEN1-222	ENST00000557356	PRDM15	P57071	1507 aa	Predicted RBP	11.81	□□□□□ -0.52
PSEN1-222	ENST00000557356	A2ML1	A8K2U0	1454 aa		11.8	□□□□□ -0.52
PSEN1-222	ENST00000557356	SLC52A1	Q9NWF4	448 aa		11.79	□□□□□ -0.52
PSEN1-222	ENST00000557356	LMTK2	Q8IWU2	1503 aa		11.79	□□□□□ -0.52
PSEN1-222	ENST00000557356	ANKLE2	Q86XL3	938 aa		11.78	□□□□□ -0.52
PSEN1-222	ENST00000557356	STAG3	Q9UJ98	1225 aa		11.78	□□□□□ -0.52
PSEN1-222	ENST00000557356	DEPDC5	O75140	1603 aa		11.78	□□□□□ -0.52
PSEN1-222	ENST00000557356	MROH1	Q8NDA8	1641 aa		11.78	□□□□□ -0.52
PSEN1-222	ENST00000557356	NUP155	O75694	1391 aa		11.78	□□□□□ -0.52
PSEN1-222	ENST00000557356	PLA2R1	Q13018	1463 aa		11.77	□□□□□ -0.52
PSEN1-222	ENST00000557356	PTPRT	O14522	1441 aa		11.77	□□□□□ -0.53
PSEN1-222	ENST00000557356	ERVK-7	P63135	1459 aa		11.76	□□□□□ -0.53
PSEN1-222	ENST00000557356	RPRD2	Q5VT52	1461 aa	Known RBP	11.76	□□□□□ -0.53
PSEN1-222	ENST00000557356	HDGF	P51858	240 aa	Known RBP	11.76	□□□□□ -0.53
PSEN1-222	ENST00000557356	SPATA31D1	Q6ZQQ2	1576 aa		11.75	□□□□□ -0.53
PSEN1-222	ENST00000557356	VWDE	Q8N2E2	1590 aa		11.75	□□□□□ -0.53
PSEN1-222	ENST00000557356	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	11.75	□□□□□ -0.53
PSEN1-222	ENST00000557356	EID1	Q9Y6B2	187 aa		11.75	□□□□□ -0.53
PSEN1-222	ENST00000557356	CAMSAP1	Q5T5Y3	1602 aa		11.75	□□□□□ -0.53
PSEN1-222	ENST00000557356	HFM1	A2PYH4	1435 aa		11.74	□□□□□ -0.53
PSEN1-222	ENST00000557356	MYO3A	Q8NEV4	1616 aa		11.74	□□□□□ -0.53
PSEN1-222	ENST00000557356	NAIP	Q13075	1403 aa		11.73	□□□□□ -0.53
PSEN1-222	ENST00000557356	IDI1	Q13907	227 aa		11.73	□□□□□ -0.53
PSEN1-222	ENST00000557356	TRIM52	Q96A61	297 aa		11.73	□□□□□ -0.53
PSEN1-222	ENST00000557356	NCKAP5L	Q9HCH0	1330 aa		11.73	□□□□□ -0.53
PSEN1-222	ENST00000557356	UGGT1	Q9NYU2	1555 aa		11.73	□□□□□ -0.53
PSEN1-222	ENST00000557356	ZNF142	P52746	1687 aa	Predicted RBP	11.72	□□□□□ -0.53
PSEN1-222	ENST00000557356	CEP152	O94986	1710 aa		11.72	□□□□□ -0.53
PSEN1-222	ENST00000557356	NOS1	P29475	1434 aa		11.71	□□□□□ -0.53
PSEN1-222	ENST00000557356	UNC13B	O14795	1591 aa		11.71	□□□□□ -0.54
PSEN1-222	ENST00000557356	EFCAB6	Q5THR3	1501 aa		11.7	□□□□□ -0.54
PSEN1-222	ENST00000557356	TXNDC2	Q86VQ3	553 aa		11.7	□□□□□ -0.54
PSEN1-222	ENST00000557356	TET3	O43151	1660 aa		11.69	□□□□□ -0.54
PSEN1-222	ENST00000557356	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	11.68	□□□□□ -0.54
PSEN1-222	ENST00000557356	CERK	Q8TCT0	537 aa		11.68	□□□□□ -0.54
PSEN1-222	ENST00000557356	SLC4A1AP	Q9BWU0	796 aa	Known RBP	11.68	□□□□□ -0.54
PSEN1-222	ENST00000557356	STRC	Q7RTU9	1775 aa		11.68	□□□□□ -0.54
PSEN1-222	ENST00000557356	IQGAP3	Q86VI3	1631 aa		11.68	□□□□□ -0.54
PSEN1-222	ENST00000557356	HRC	P23327	699 aa		11.67	□□□□□ -0.54
PSEN1-222	ENST00000557356	TMEM2	Q9UHN6	1383 aa		11.67	□□□□□ -0.54
PSEN1-222	ENST00000557356	CFAP65	Q6ZU64	1925 aa	Known RBP	11.66	□□□□□ -0.54
PSEN1-222	ENST00000557356	GCC2	Q8IWJ2	1684 aa		11.65	□□□□□ -0.54
PSEN1-222	ENST00000557356	MED14	O60244	1454 aa		11.65	□□□□□ -0.54
PSEN1-222	ENST00000557356	CHGA	P10645	457 aa	Known RBP	11.65	□□□□□ -0.54
PSEN1-222	ENST00000557356	FBXO41	Q8TF61	875 aa		11.65	□□□□□ -0.54
PSEN1-222	ENST00000557356	NPHP4	O75161	1426 aa	Predicted RBP	11.65	□□□□□ -0.54
PSEN1-222	ENST00000557356	SETD5	Q9C0A6	1442 aa		11.65	□□□□□ -0.54
PSEN1-222	ENST00000557356	KDM5A	P29375	1690 aa	Known RBP	11.65	□□□□□ -0.55
PSEN1-222	ENST00000557356	SLIT1	O75093	1534 aa		11.64	□□□□□ -0.55
PSEN1-222	ENST00000557356	SCAF11	Q99590	1463 aa	Known RBP	11.63	□□□□□ -0.55
PSEN1-222	ENST00000557356	PPP1R15A	O75807	674 aa	Predicted RBP	11.63	□□□□□ -0.55
PSEN1-222	ENST00000557356	ARHGAP23	Q9P227	1491 aa		11.63	□□□□□ -0.55
PSEN1-222	ENST00000557356	LTK	P29376	864 aa		11.62	□□□□□ -0.55
PSEN1-222	ENST00000557356	BCAN	Q96GW7	911 aa		11.62	□□□□□ -0.55
PSEN1-222	ENST00000557356	MPHOSPH9	Q99550	1183 aa		11.62	□□□□□ -0.55
PSEN1-222	ENST00000557356	UBR1	Q8IWV7	1749 aa		11.61	□□□□□ -0.55
PSEN1-222	ENST00000557356	SYNM	O15061	1565 aa		11.61	□□□□□ -0.55
PSEN1-222	ENST00000557356	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	11.6	□□□□□ -0.55
PSEN1-222	ENST00000557356	PIK3C2B	O00750	1634 aa		11.6	□□□□□ -0.55
PSEN1-222	ENST00000557356		E9PCH4	1651 aa		11.6	□□□□□ -0.55
PSEN1-222	ENST00000557356	IQSEC2	Q5JU85	1478 aa		11.59	□□□□□ -0.55
PSEN1-222	ENST00000557356	ZNF326	Q5BKZ1	582 aa	Known RBP	11.59	□□□□□ -0.55
PSEN1-222	ENST00000557356	ILDR1	Q86SU0	546 aa	Predicted RBP	11.59	□□□□□ -0.55
PSEN1-222	ENST00000557356	ADGRB3	O60242	1522 aa		11.59	□□□□□ -0.55
PSEN1-222	ENST00000557356	POLR1A	O95602	1720 aa	Predicted RBP	11.58	□□□□□ -0.56

Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms