RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 DHX29Q7Z478 1369 aaKnown RBP16.58■□□□□ 0.24
SHMT2-220ENST00000555634 YEATS2Q9ULM3 1422 aa16.58■□□□□ 0.24
SHMT2-220ENST00000555634 PRDM15P57071 1507 aaPredicted RBP16.58■□□□□ 0.24
SHMT2-220ENST00000555634 KDM5DQ9BY66 1539 aa16.58■□□□□ 0.24
SHMT2-220ENST00000555634 AGLP35573 1532 aa16.56■□□□□ 0.24
SHMT2-220ENST00000555634 FAM135AQ9P2D6 1515 aa16.56■□□□□ 0.24
SHMT2-220ENST00000555634 KANK1Q14678 1352 aa16.56■□□□□ 0.24
SHMT2-220ENST00000555634 HRCP23327 699 aa16.56■□□□□ 0.24
SHMT2-220ENST00000555634 CEP152O94986 1710 aa16.55■□□□□ 0.24
SHMT2-220ENST00000555634 TET3O43151 1660 aa16.53■□□□□ 0.24
SHMT2-220ENST00000555634 TRIM52Q96A61 297 aa16.53■□□□□ 0.24
SHMT2-220ENST00000555634 FER1L4A9Z1Z3 1794 aa16.51■□□□□ 0.23
SHMT2-220ENST00000555634 CAMSAP1Q5T5Y3 1602 aa16.5■□□□□ 0.23
SHMT2-220ENST00000555634 MROH1Q8NDA8 1641 aa16.5■□□□□ 0.23
SHMT2-220ENST00000555634 KIF3BO15066 747 aa16.49■□□□□ 0.23
SHMT2-220ENST00000555634 SIGLEC1Q9BZZ2 1709 aa16.48■□□□□ 0.23
SHMT2-220ENST00000555634 NUP155O75694 1391 aa16.48■□□□□ 0.23
SHMT2-220ENST00000555634 CLTCQ00610 1675 aaKnown RBP16.47■□□□□ 0.23
SHMT2-220ENST00000555634 MROH2AA6NES4 1674 aa16.46■□□□□ 0.23
SHMT2-220ENST00000555634 ARID4BQ4LE39 1312 aaPredicted RBP16.46■□□□□ 0.23
SHMT2-220ENST00000555634 CCER1Q8TC90 406 aaPredicted RBP16.46■□□□□ 0.23
SHMT2-220ENST00000555634 VWDEQ8N2E2 1590 aa16.46■□□□□ 0.23
SHMT2-220ENST00000555634 EFCAB6Q5THR3 1501 aa16.45■□□□□ 0.22
SHMT2-220ENST00000555634 SPHKAPQ2M3C7 1700 aa16.45■□□□□ 0.22
SHMT2-220ENST00000555634 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.45■□□□□ 0.22
SHMT2-220ENST00000555634 E9PCH4 1651 aa16.44■□□□□ 0.22
SHMT2-220ENST00000555634 ESF1Q9H501 851 aaKnown RBP16.44■□□□□ 0.22
SHMT2-220ENST00000555634 LMTK2Q8IWU2 1503 aa16.44■□□□□ 0.22
SHMT2-220ENST00000555634 PZPP20742 1482 aa16.43■□□□□ 0.22
SHMT2-220ENST00000555634 ABCC3O15438 1527 aa16.43■□□□□ 0.22
SHMT2-220ENST00000555634 SLC4A1APQ9BWU0 796 aaKnown RBP16.42■□□□□ 0.22
SHMT2-220ENST00000555634 DHX57Q6P158 1386 aaKnown RBP16.41■□□□□ 0.22
SHMT2-220ENST00000555634 GGT6Q6P531 493 aa16.41■□□□□ 0.22
SHMT2-220ENST00000555634 CLSPNQ9HAW4 1339 aa16.41■□□□□ 0.22
SHMT2-220ENST00000555634 RPRD2Q5VT52 1461 aaKnown RBP16.41■□□□□ 0.22
SHMT2-220ENST00000555634 CNTLNQ9NXG0 1405 aa16.4■□□□□ 0.22
SHMT2-220ENST00000555634 PPP6R1Q9UPN7 881 aa16.4■□□□□ 0.22
SHMT2-220ENST00000555634 WASHC2CQ9Y4E1 1318 aa16.39■□□□□ 0.21
SHMT2-220ENST00000555634 MPHOSPH9Q99550 1183 aa16.37■□□□□ 0.21
SHMT2-220ENST00000555634 RIMS1Q86UR5 1692 aaKnown RBP16.37■□□□□ 0.21
SHMT2-220ENST00000555634 PREX1Q8TCU6 1659 aa16.37■□□□□ 0.21
SHMT2-220ENST00000555634 KIF1BO60333 1816 aa16.35■□□□□ 0.21
SHMT2-220ENST00000555634 CFAP65Q6ZU64 1925 aaKnown RBP16.35■□□□□ 0.21
SHMT2-220ENST00000555634 MADDQ8WXG6 1647 aa16.35■□□□□ 0.21
SHMT2-220ENST00000555634 MLECQ14165 292 aa16.34■□□□□ 0.21
SHMT2-220ENST00000555634 TRPM2O94759 1503 aa16.34■□□□□ 0.21
SHMT2-220ENST00000555634 C3P01024 1663 aa16.33■□□□□ 0.2
SHMT2-220ENST00000555634 ADAMTSL3P82987 1691 aa16.33■□□□□ 0.2
SHMT2-220ENST00000555634 PKD2Q13563 968 aa16.32■□□□□ 0.2
SHMT2-220ENST00000555634 ARHGAP31Q2M1Z3 1444 aa16.31■□□□□ 0.2
SHMT2-220ENST00000555634 CCDC144AA2RUR9 1427 aa16.3■□□□□ 0.2
SHMT2-220ENST00000555634 NPATQ14207 1427 aa16.28■□□□□ 0.2
SHMT2-220ENST00000555634 CLTCL1P53675 1640 aa16.27■□□□□ 0.19
SHMT2-220ENST00000555634 ZEB1P37275 1124 aaPredicted RBP16.26■□□□□ 0.19
SHMT2-220ENST00000555634 SPATA31D1Q6ZQQ2 1576 aa16.26■□□□□ 0.19
SHMT2-220ENST00000555634 PIK3C2BO00750 1634 aa16.25■□□□□ 0.19
SHMT2-220ENST00000555634 ERVK-7P63135 1459 aa16.24■□□□□ 0.19
SHMT2-220ENST00000555634 SYNMO15061 1565 aa16.23■□□□□ 0.19
SHMT2-220ENST00000555634 KDM5AP29375 1690 aaKnown RBP16.23■□□□□ 0.19
SHMT2-220ENST00000555634 TONSLQ96HA7 1378 aa16.23■□□□□ 0.19
SHMT2-220ENST00000555634 ANKRD30BQ9BXX2 1392 aa16.23■□□□□ 0.19
SHMT2-220ENST00000555634 PTPRTO14522 1441 aa16.22■□□□□ 0.19
SHMT2-220ENST00000555634 FOXD1Q16676 465 aa16.22■□□□□ 0.19
SHMT2-220ENST00000555634 MYO3AQ8NEV4 1616 aa16.22■□□□□ 0.19
SHMT2-220ENST00000555634 NEURL4Q96JN8 1562 aa16.21■□□□□ 0.19
SHMT2-220ENST00000555634 ZMYM3Q14202 1370 aa16.2■□□□□ 0.18
SHMT2-220ENST00000555634 NOS1P29475 1434 aa16.19■□□□□ 0.18
SHMT2-220ENST00000555634 MYO5BQ9ULV0 1848 aa16.19■□□□□ 0.18
SHMT2-220ENST00000555634 ADGRB3O60242 1522 aa16.18■□□□□ 0.18
SHMT2-220ENST00000555634 ZNF142P52746 1687 aaPredicted RBP16.18■□□□□ 0.18
SHMT2-220ENST00000555634 NEUROD1Q13562 356 aa16.17■□□□□ 0.18
SHMT2-220ENST00000555634 UGGT1Q9NYU2 1555 aa16.17■□□□□ 0.18
SHMT2-220ENST00000555634 IFT172Q9UG01 1749 aa16.16■□□□□ 0.18
SHMT2-220ENST00000555634 NLRP1Q9C000 1473 aa16.16■□□□□ 0.18
SHMT2-220ENST00000555634 TNRQ92752 1358 aa16.15■□□□□ 0.18
SHMT2-220ENST00000555634 TIMELESSQ9UNS1 1208 aa16.15■□□□□ 0.18
SHMT2-220ENST00000555634 PLA2R1Q13018 1463 aa16.15■□□□□ 0.18
SHMT2-220ENST00000555634 SETD1BQ9UPS6 1966 aaKnown RBP16.15■□□□□ 0.18
SHMT2-220ENST00000555634 PPLO60437 1756 aa16.14■□□□□ 0.17
SHMT2-220ENST00000555634 SLC52A1Q9NWF4 448 aa16.14■□□□□ 0.17
SHMT2-220ENST00000555634 PTPRMP28827 1452 aa16.14■□□□□ 0.17
SHMT2-220ENST00000555634 UBR1Q8IWV7 1749 aa16.14■□□□□ 0.17
SHMT2-220ENST00000555634 TMEM131LA2VDJ0 1609 aa16.13■□□□□ 0.17
SHMT2-220ENST00000555634 STAG3Q9UJ98 1225 aa16.12■□□□□ 0.17
SHMT2-220ENST00000555634 CEP170BQ9Y4F5 1589 aaPredicted RBP16.12■□□□□ 0.17
SHMT2-220ENST00000555634 KDM4FA0A1W2PPD8 638 aa16.1■□□□□ 0.17
SHMT2-220ENST00000555634 PLPPR3Q6T4P5 718 aa16.1■□□□□ 0.17
SHMT2-220ENST00000555634 SIN3AQ96ST3 1273 aa16.1■□□□□ 0.17
SHMT2-220ENST00000555634 CHGAP10645 457 aaKnown RBP16.09■□□□□ 0.17
SHMT2-220ENST00000555634 LAMC1P11047 1609 aa16.08■□□□□ 0.17
SHMT2-220ENST00000555634 ZNF326Q5BKZ1 582 aaKnown RBP16.07■□□□□ 0.16
SHMT2-220ENST00000555634 FBXO31Q5XUX0 539 aaPredicted RBP16.07■□□□□ 0.16
SHMT2-220ENST00000555634 UHRF1BP1Q6BDS2 1440 aa16.07■□□□□ 0.16
SHMT2-220ENST00000555634 SPATA31E1Q6ZUB1 1445 aa16.07■□□□□ 0.16
SHMT2-220ENST00000555634 A2ML1A8K2U0 1454 aa16.06■□□□□ 0.16
SHMT2-220ENST00000555634 POLR1AO95602 1720 aaPredicted RBP16.05■□□□□ 0.16
SHMT2-220ENST00000555634 MYOM2P54296 1465 aa16.05■□□□□ 0.16
SHMT2-220ENST00000555634 KIAA1210Q9ULL0 1709 aa16.05■□□□□ 0.16
SHMT2-220ENST00000555634 STAC3Q96MF2 364 aa16.04■□□□□ 0.16
SHMT2-220ENST00000555634 NEXMIFQ5QGS0 1516 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms