RNA–Protein interactions for RNA: ENST00000554409.1

LINC00640-201, long intergenic non-protein coding RNA 640, humanhuman

TSL 3 BASIC

Gene LINC00640, Length 498 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00640-201ENST00000554409 SLC4A2P04920 1241 aa11.8□□□□□ -0.52
LINC00640-201ENST00000554409 CACNB1Q02641 598 aaPredicted RBP11.8□□□□□ -0.52
LINC00640-201ENST00000554409 C1QBPQ07021 282 aaKnown RBP11.79□□□□□ -0.52
LINC00640-201ENST00000554409 TCOF1Q13428 1488 aaKnown RBP11.78□□□□□ -0.52
LINC00640-201ENST00000554409 DHX29Q7Z478 1369 aaKnown RBP11.78□□□□□ -0.52
LINC00640-201ENST00000554409 CLTCQ00610 1675 aaKnown RBP11.78□□□□□ -0.52
LINC00640-201ENST00000554409 FAM135AQ9P2D6 1515 aa11.77□□□□□ -0.52
LINC00640-201ENST00000554409 DNMT1P26358 1616 aaKnown RBP11.77□□□□□ -0.53
LINC00640-201ENST00000554409 FGD6Q6ZV73 1430 aa11.77□□□□□ -0.53
LINC00640-201ENST00000554409 SHANK2Q9UPX8 1470 aa11.76□□□□□ -0.53
LINC00640-201ENST00000554409 SETD1BQ9UPS6 1966 aaKnown RBP11.76□□□□□ -0.53
LINC00640-201ENST00000554409 EIF2AK4Q9P2K8 1649 aaKnown RBP11.76□□□□□ -0.53
LINC00640-201ENST00000554409 TSPY4P0CV99 314 aa11.75□□□□□ -0.53
LINC00640-201ENST00000554409 TSPY10P0CW01 314 aa11.75□□□□□ -0.53
LINC00640-201ENST00000554409 ESF1Q9H501 851 aaKnown RBP11.75□□□□□ -0.53
LINC00640-201ENST00000554409 RNF17Q9BXT8 1623 aaKnown RBP11.75□□□□□ -0.53
LINC00640-201ENST00000554409 CEBPAP49715 358 aaPredicted RBP11.73□□□□□ -0.53
LINC00640-201ENST00000554409 NPATQ14207 1427 aa11.73□□□□□ -0.53
LINC00640-201ENST00000554409 KDM5DQ9BY66 1539 aa11.72□□□□□ -0.53
LINC00640-201ENST00000554409 ABCC5O15440 1437 aa11.72□□□□□ -0.53
LINC00640-201ENST00000554409 DAPK1P53355 1430 aa11.72□□□□□ -0.53
LINC00640-201ENST00000554409 UHRF1BP1Q6BDS2 1440 aa11.72□□□□□ -0.53
LINC00640-201ENST00000554409 ZC3H13Q5T200 1668 aaKnown RBP11.71□□□□□ -0.53
LINC00640-201ENST00000554409 DUOX2Q9NRD8 1548 aa11.71□□□□□ -0.53
LINC00640-201ENST00000554409 ZMYM3Q14202 1370 aa11.71□□□□□ -0.53
LINC00640-201ENST00000554409 U3KPZ7 1027 aaPredicted RBP11.71□□□□□ -0.53
LINC00640-201ENST00000554409 GGT6Q6P531 493 aa11.7□□□□□ -0.54
LINC00640-201ENST00000554409 ZNF142P52746 1687 aaPredicted RBP11.7□□□□□ -0.54
LINC00640-201ENST00000554409 MROH1Q8NDA8 1641 aa11.69□□□□□ -0.54
LINC00640-201ENST00000554409 MYO3AQ8NEV4 1616 aa11.69□□□□□ -0.54
LINC00640-201ENST00000554409 KIF3BO15066 747 aa11.69□□□□□ -0.54
LINC00640-201ENST00000554409 PTPRKQ15262 1439 aa11.69□□□□□ -0.54
LINC00640-201ENST00000554409 ERBINQ96RT1 1412 aa11.69□□□□□ -0.54
LINC00640-201ENST00000554409 DEPDC5O75140 1603 aa11.68□□□□□ -0.54
LINC00640-201ENST00000554409 HSPA2P54652 639 aa11.67□□□□□ -0.54
LINC00640-201ENST00000554409 FOXD4L1Q9NU39 408 aa11.67□□□□□ -0.54
LINC00640-201ENST00000554409 ADGRL2O95490 1459 aa11.67□□□□□ -0.54
LINC00640-201ENST00000554409 PZPP20742 1482 aa11.67□□□□□ -0.54
LINC00640-201ENST00000554409 STRCQ7RTU9 1775 aa11.67□□□□□ -0.54
LINC00640-201ENST00000554409 KIF15Q9NS87 1388 aa11.67□□□□□ -0.54
LINC00640-201ENST00000554409 PRDM15P57071 1507 aaPredicted RBP11.66□□□□□ -0.54
LINC00640-201ENST00000554409 ABCC3O15438 1527 aa11.65□□□□□ -0.54
LINC00640-201ENST00000554409 CEP152O94986 1710 aa11.65□□□□□ -0.54
LINC00640-201ENST00000554409 ANKRD30AQ9BXX3 1397 aa11.65□□□□□ -0.55
LINC00640-201ENST00000554409 CEP170BQ9Y4F5 1589 aaPredicted RBP11.64□□□□□ -0.55
LINC00640-201ENST00000554409 NCOA1Q15788 1441 aa11.64□□□□□ -0.55
LINC00640-201ENST00000554409 CAMSAP1Q5T5Y3 1602 aa11.64□□□□□ -0.55
LINC00640-201ENST00000554409 WASHC2CQ9Y4E1 1318 aa11.63□□□□□ -0.55
LINC00640-201ENST00000554409 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.62□□□□□ -0.55
LINC00640-201ENST00000554409 MYCNP04198 464 aaPredicted RBP11.61□□□□□ -0.55
LINC00640-201ENST00000554409 FAM50AQ14320 339 aaKnown RBP11.61□□□□□ -0.55
LINC00640-201ENST00000554409 RRP7BPQ9NSQ0 103 aa11.61□□□□□ -0.55
LINC00640-201ENST00000554409 A2ML1A8K2U0 1454 aa11.61□□□□□ -0.55
LINC00640-201ENST00000554409 PLA2R1Q13018 1463 aa11.61□□□□□ -0.55
LINC00640-201ENST00000554409 SPATA31D1Q6ZQQ2 1576 aa11.61□□□□□ -0.55
LINC00640-201ENST00000554409 VWDEQ8N2E2 1590 aa11.61□□□□□ -0.55
LINC00640-201ENST00000554409 NLRP1Q9C000 1473 aa11.59□□□□□ -0.55
LINC00640-201ENST00000554409 TNRQ92752 1358 aa11.59□□□□□ -0.55
LINC00640-201ENST00000554409 CHIC2Q9UKJ5 165 aa11.59□□□□□ -0.55
LINC00640-201ENST00000554409 LMTK2Q8IWU2 1503 aa11.59□□□□□ -0.55
LINC00640-201ENST00000554409 PTPRTO14522 1441 aa11.59□□□□□ -0.55
LINC00640-201ENST00000554409 ARHGAP31Q2M1Z3 1444 aa11.59□□□□□ -0.55
LINC00640-201ENST00000554409 ERVK-7P63135 1459 aa11.58□□□□□ -0.56
LINC00640-201ENST00000554409 ROCK1Q13464 1354 aa11.58□□□□□ -0.56
LINC00640-201ENST00000554409 FBXO31Q5XUX0 539 aaPredicted RBP11.57□□□□□ -0.56
LINC00640-201ENST00000554409 SAMD1Q6SPF0 538 aaPredicted RBP11.57□□□□□ -0.56
LINC00640-201ENST00000554409 RRBP1Q9P2E9 1410 aaKnown RBP11.57□□□□□ -0.56
LINC00640-201ENST00000554409 ANKRD50Q9ULJ7 1429 aa11.57□□□□□ -0.56
LINC00640-201ENST00000554409 UNC13BO14795 1591 aa11.57□□□□□ -0.56
LINC00640-201ENST00000554409 POLR1AO95602 1720 aaPredicted RBP11.57□□□□□ -0.56
LINC00640-201ENST00000554409 KANK1Q14678 1352 aa11.56□□□□□ -0.56
LINC00640-201ENST00000554409 EFCAB6Q5THR3 1501 aa11.55□□□□□ -0.56
LINC00640-201ENST00000554409 UGGT1Q9NYU2 1555 aa11.54□□□□□ -0.56
LINC00640-201ENST00000554409 PPARGC1BQ86YN6 1023 aaKnown RBP11.54□□□□□ -0.56
LINC00640-201ENST00000554409 CFAP65Q6ZU64 1925 aaKnown RBP11.54□□□□□ -0.56
LINC00640-201ENST00000554409 TET3O43151 1660 aa11.53□□□□□ -0.56
LINC00640-201ENST00000554409 GCC2Q8IWJ2 1684 aa11.53□□□□□ -0.56
LINC00640-201ENST00000554409 UBR1Q8IWV7 1749 aa11.53□□□□□ -0.56
LINC00640-201ENST00000554409 PKD2Q13563 968 aa11.53□□□□□ -0.56
LINC00640-201ENST00000554409 KDM5AP29375 1690 aaKnown RBP11.52□□□□□ -0.56
LINC00640-201ENST00000554409 NEURL4Q96JN8 1562 aa11.52□□□□□ -0.57
LINC00640-201ENST00000554409 IQGAP3Q86VI3 1631 aa11.52□□□□□ -0.57
LINC00640-201ENST00000554409 RPRD2Q5VT52 1461 aaKnown RBP11.51□□□□□ -0.57
LINC00640-201ENST00000554409 LTBP4Q8N2S1 1624 aa11.5□□□□□ -0.57
LINC00640-201ENST00000554409 ZBTB22O15209 634 aa11.5□□□□□ -0.57
LINC00640-201ENST00000554409 SYNMO15061 1565 aa11.5□□□□□ -0.57
LINC00640-201ENST00000554409 PIK3C2BO00750 1634 aa11.49□□□□□ -0.57
LINC00640-201ENST00000554409 ILDR1Q86SU0 546 aaPredicted RBP11.49□□□□□ -0.57
LINC00640-201ENST00000554409 THEMISQ8N1K5 641 aaPredicted RBP11.49□□□□□ -0.57
LINC00640-201ENST00000554409 NCKAP5LQ9HCH0 1330 aa11.49□□□□□ -0.57
LINC00640-201ENST00000554409 NOS1P29475 1434 aa11.49□□□□□ -0.57
LINC00640-201ENST00000554409 MED14O60244 1454 aa11.49□□□□□ -0.57
LINC00640-201ENST00000554409 CAPN15O75808 1086 aa11.48□□□□□ -0.57
LINC00640-201ENST00000554409 E9PCH4 1651 aa11.48□□□□□ -0.57
LINC00640-201ENST00000554409 IQGAP1P46940 1657 aa11.47□□□□□ -0.57
LINC00640-201ENST00000554409 SLIT1O75093 1534 aa11.47□□□□□ -0.57
LINC00640-201ENST00000554409 ARHGAP23Q9P227 1491 aa11.47□□□□□ -0.57
LINC00640-201ENST00000554409 CERKQ8TCT0 537 aa11.47□□□□□ -0.57
LINC00640-201ENST00000554409 FBXO41Q8TF61 875 aa11.47□□□□□ -0.57
LINC00640-201ENST00000554409 IQSEC2Q5JU85 1478 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms