RNA–Protein interactions for RNA: ENST00000554258.1

NEK9-204, Transcript of NIMA related kinase 9, humanhuman

TSL 3

Gene NEK9, Length 578 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-204ENST00000554258 IQGAP1P46940 1657 aa28.04■■■□□ 2.08
NEK9-204ENST00000554258 DEPDC5O75140 1603 aa28.04■■■□□ 2.08
NEK9-204ENST00000554258 INO80Q9ULG1 1556 aaPredicted RBP28.04■■■□□ 2.08
NEK9-204ENST00000554258 MED14O60244 1454 aa28.03■■■□□ 2.08
NEK9-204ENST00000554258 HNRNPMP52272 730 aaKnown RBP eCLIP28.02■■■□□ 2.08
NEK9-204ENST00000554258 THEMISQ8N1K5 641 aaPredicted RBP28■■■□□ 2.07
NEK9-204ENST00000554258 FBXO31Q5XUX0 539 aaPredicted RBP27.99■■■□□ 2.07
NEK9-204ENST00000554258 ARHGAP35Q9NRY4 1499 aa27.99■■■□□ 2.07
NEK9-204ENST00000554258 ADGBQ8N7X0 1667 aa27.99■■■□□ 2.07
NEK9-204ENST00000554258 UGGT1Q9NYU2 1555 aa27.95■■■□□ 2.07
NEK9-204ENST00000554258 FAM135AQ9P2D6 1515 aa27.95■■■□□ 2.06
NEK9-204ENST00000554258 PZPP20742 1482 aa27.93■■■□□ 2.06
NEK9-204ENST00000554258 SRCAPQ6ZRS2 3230 aa27.91■■■□□ 2.06
NEK9-204ENST00000554258 CCDC18Q5T9S5 1454 aa27.9■■■□□ 2.06
NEK9-204ENST00000554258 NLRP1Q9C000 1473 aa27.9■■■□□ 2.06
NEK9-204ENST00000554258 KIAA1107Q9UPP5 1409 aa27.89■■■□□ 2.06
NEK9-204ENST00000554258 PLEKHH2Q8IVE3 1493 aa27.89■■■□□ 2.05
NEK9-204ENST00000554258 UBTFP17480 764 aaKnown RBP27.86■■■□□ 2.05
NEK9-204ENST00000554258 GPATCH8Q9UKJ3 1502 aaKnown RBP27.86■■■□□ 2.05
NEK9-204ENST00000554258 MIA2Q96PC5 1412 aa27.85■■■□□ 2.05
NEK9-204ENST00000554258 XIRP1Q702N8 1843 aaKnown RBP27.85■■■□□ 2.05
NEK9-204ENST00000554258 KDM5DQ9BY66 1539 aa27.84■■■□□ 2.05
NEK9-204ENST00000554258 FAM135BQ49AJ0 1406 aa27.84■■■□□ 2.05
NEK9-204ENST00000554258 UPF1Q92900 1129 aaKnown RBP eCLIP27.83■■■□□ 2.05
NEK9-204ENST00000554258 EHMT2Q96KQ7 1210 aa27.82■■■□□ 2.04
NEK9-204ENST00000554258 ZC3H13Q5T200 1668 aaKnown RBP27.81■■■□□ 2.04
NEK9-204ENST00000554258 CFDP1Q9UEE9 299 aaPredicted RBP27.79■■■□□ 2.04
NEK9-204ENST00000554258 WASHC2CQ9Y4E1 1318 aa27.78■■■□□ 2.04
NEK9-204ENST00000554258 CASKIN1Q8WXD9 1431 aa27.76■■■□□ 2.04
NEK9-204ENST00000554258 DHX29Q7Z478 1369 aaKnown RBP27.76■■■□□ 2.03
NEK9-204ENST00000554258 KIF3BO15066 747 aa27.76■■■□□ 2.03
NEK9-204ENST00000554258 ROBO1Q9Y6N7 1651 aa27.75■■■□□ 2.03
NEK9-204ENST00000554258 CCNB3Q8WWL7 1395 aa27.69■■■□□ 2.02
NEK9-204ENST00000554258 RTEL1-TNFRSF6BF6WH68 1400 aa27.67■■■□□ 2.02
NEK9-204ENST00000554258 TRIM52Q96A61 297 aa27.67■■■□□ 2.02
NEK9-204ENST00000554258 SCAF11Q99590 1463 aaKnown RBP27.67■■■□□ 2.02
NEK9-204ENST00000554258 PHLPP1O60346 1717 aa27.62■■■□□ 2.01
NEK9-204ENST00000554258 JCADQ9P266 1359 aa27.61■■■□□ 2.01
NEK9-204ENST00000554258 UBR1Q8IWV7 1749 aa27.61■■■□□ 2.01
NEK9-204ENST00000554258 ZNF644Q9H582 1327 aaPredicted RBP27.61■■■□□ 2.01
NEK9-204ENST00000554258 MBD5Q9P267 1494 aa27.6■■■□□ 2.01
NEK9-204ENST00000554258 CHIC1Q5VXU3 224 aa27.6■■■□□ 2.01
NEK9-204ENST00000554258 TMEM94Q12767 1356 aa27.6■■■□□ 2.01
NEK9-204ENST00000554258 LRRC9Q6ZRR7 1453 aa27.59■■■□□ 2.01
NEK9-204ENST00000554258 FYCO1Q9BQS8 1478 aa27.59■■■□□ 2.01
NEK9-204ENST00000554258 ZNF772Q68DY9 489 aaPredicted RBP27.58■■■□□ 2.01
NEK9-204ENST00000554258 TXNDC2Q86VQ3 553 aa27.56■■■□□ 2
NEK9-204ENST00000554258 CFAP65Q6ZU64 1925 aaKnown RBP27.56■■■□□ 2
NEK9-204ENST00000554258 LTKP29376 864 aa27.55■■■□□ 2
NEK9-204ENST00000554258 ERVK-7P63135 1459 aa27.54■■■□□ 2
NEK9-204ENST00000554258 MEX3CQ5U5Q3 659 aaKnown RBP27.54■■■□□ 2
NEK9-204ENST00000554258 MAP3K1Q13233 1512 aa27.51■■■□□ 2
NEK9-204ENST00000554258 SLIT1O75093 1534 aa27.51■■□□□ 1.99
NEK9-204ENST00000554258 ARHGAP23Q9P227 1491 aa27.51■■□□□ 1.99
NEK9-204ENST00000554258 LRP6O75581 1613 aa27.49■■□□□ 1.99
NEK9-204ENST00000554258 EID1Q9Y6B2 187 aa27.49■■□□□ 1.99
NEK9-204ENST00000554258 NCOA2Q15596 1464 aa27.49■■□□□ 1.99
NEK9-204ENST00000554258 ABCC3O15438 1527 aa27.48■■□□□ 1.99
NEK9-204ENST00000554258 RXRBP28702 533 aa27.48■■□□□ 1.99
NEK9-204ENST00000554258 TIAM1Q13009 1591 aa27.48■■□□□ 1.99
NEK9-204ENST00000554258 PROSER2Q86WR7 435 aaPredicted RBP27.47■■□□□ 1.99
NEK9-204ENST00000554258 RBM33Q96EV2 1170 aaKnown RBP27.47■■□□□ 1.99
NEK9-204ENST00000554258 CCDC141Q6ZP82 1450 aa27.45■■□□□ 1.99
NEK9-204ENST00000554258 SPATA31A6Q5VVP1 1343 aa27.45■■□□□ 1.99
NEK9-204ENST00000554258 MTUS2Q5JR59 1369 aa27.45■■□□□ 1.98
NEK9-204ENST00000554258 COL16A1Q07092 1604 aaPredicted RBP27.45■■□□□ 1.98
NEK9-204ENST00000554258 KCNA6P17658 529 aa27.44■■□□□ 1.98
NEK9-204ENST00000554258 SLAIN2Q9P270 581 aa27.43■■□□□ 1.98
NEK9-204ENST00000554258 CDK12Q9NYV4 1490 aaPredicted RBP27.43■■□□□ 1.98
NEK9-204ENST00000554258 MSH6P52701 1360 aa27.41■■□□□ 1.98
NEK9-204ENST00000554258 PRDM15P57071 1507 aaPredicted RBP27.4■■□□□ 1.98
NEK9-204ENST00000554258 FGD6Q6ZV73 1430 aa27.38■■□□□ 1.97
NEK9-204ENST00000554258 CEP152O94986 1710 aa27.38■■□□□ 1.97
NEK9-204ENST00000554258 NKTRP30414 1462 aaKnown RBP27.35■■□□□ 1.97
NEK9-204ENST00000554258 SHPRHQ149N8 1683 aa27.33■■□□□ 1.97
NEK9-204ENST00000554258 RSPH4AQ5TD94 716 aa27.33■■□□□ 1.97
NEK9-204ENST00000554258 TMEM2Q9UHN6 1383 aa27.33■■□□□ 1.97
NEK9-204ENST00000554258 SLC26A8Q96RN1 970 aa27.32■■□□□ 1.96
NEK9-204ENST00000554258 CAMSAP2Q08AD1 1489 aa27.31■■□□□ 1.96
NEK9-204ENST00000554258 PIK3C2BO00750 1634 aa27.3■■□□□ 1.96
NEK9-204ENST00000554258 NWD1Q149M9 1564 aa27.3■■□□□ 1.96
NEK9-204ENST00000554258 STAG3Q9UJ98 1225 aa27.28■■□□□ 1.96
NEK9-204ENST00000554258 MROH1Q8NDA8 1641 aa27.27■■□□□ 1.96
NEK9-204ENST00000554258 EIF2AK4Q9P2K8 1649 aaKnown RBP27.27■■□□□ 1.96
NEK9-204ENST00000554258 TSPY4P0CV99 314 aa27.27■■□□□ 1.96
NEK9-204ENST00000554258 TSPY10P0CW01 314 aa27.27■■□□□ 1.96
NEK9-204ENST00000554258 TET3O43151 1660 aa27.27■■□□□ 1.96
NEK9-204ENST00000554258 EHBP1L1Q8N3D4 1523 aa27.26■■□□□ 1.96
NEK9-204ENST00000554258 KDM5AP29375 1690 aaKnown RBP27.26■■□□□ 1.95
NEK9-204ENST00000554258 FOXD1Q16676 465 aa27.25■■□□□ 1.95
NEK9-204ENST00000554258 ZRANB1Q9UGI0 708 aa27.25■■□□□ 1.95
NEK9-204ENST00000554258 RGS12O14924 1447 aa27.24■■□□□ 1.95
NEK9-204ENST00000554258 AFF2P51816 1311 aa27.24■■□□□ 1.95
NEK9-204ENST00000554258 NUTM2BA6NNL0 878 aaPredicted RBP27.24■■□□□ 1.95
NEK9-204ENST00000554258 NUTM2EB1AL46 878 aaPredicted RBP27.24■■□□□ 1.95
NEK9-204ENST00000554258 NUTM2AQ8IVF1 878 aaPredicted RBP27.24■■□□□ 1.95
NEK9-204ENST00000554258 NUTM2DQ5VT03 806 aaPredicted RBP27.23■■□□□ 1.95
NEK9-204ENST00000554258 AHDC1Q5TGY3 1603 aaPredicted RBP27.23■■□□□ 1.95
NEK9-204ENST00000554258 ARHGEF5Q12774 1597 aa27.22■■□□□ 1.95
NEK9-204ENST00000554258 CEP162Q5TB80 1403 aa27.22■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms