RNA–Protein interactions for RNA: ENST00000553998.5

ABCD4-220, Transcript of ATP binding cassette subfamily D member 4, humanhuman

TSL 3

Gene ABCD4, Length 478 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD4-220ENST00000553998 THEMISQ8N1K5 641 aaPredicted RBP12.5□□□□□ -0.41
ABCD4-220ENST00000553998 ZNF644Q9H582 1327 aaPredicted RBP12.5□□□□□ -0.41
ABCD4-220ENST00000553998 TNRQ92752 1358 aa12.5□□□□□ -0.41
ABCD4-220ENST00000553998 MED1Q15648 1581 aaPredicted RBP12.49□□□□□ -0.41
ABCD4-220ENST00000553998 MED14O60244 1454 aa12.49□□□□□ -0.41
ABCD4-220ENST00000553998 NEURL4Q96JN8 1562 aa12.48□□□□□ -0.41
ABCD4-220ENST00000553998 FAM135AQ9P2D6 1515 aa12.48□□□□□ -0.41
ABCD4-220ENST00000553998 PZPP20742 1482 aa12.48□□□□□ -0.41
ABCD4-220ENST00000553998 MIA2Q96PC5 1412 aa12.48□□□□□ -0.41
ABCD4-220ENST00000553998 SCAF1Q9H7N4 1312 aaKnown RBP12.47□□□□□ -0.41
ABCD4-220ENST00000553998 RSPH4AQ5TD94 716 aa12.47□□□□□ -0.41
ABCD4-220ENST00000553998 MTUS2Q5JR59 1369 aa12.46□□□□□ -0.41
ABCD4-220ENST00000553998 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.46□□□□□ -0.41
ABCD4-220ENST00000553998 KIF3BO15066 747 aa12.46□□□□□ -0.41
ABCD4-220ENST00000553998 VWDEQ8N2E2 1590 aa12.46□□□□□ -0.42
ABCD4-220ENST00000553998 NLRP1Q9C000 1473 aa12.46□□□□□ -0.42
ABCD4-220ENST00000553998 ADGBQ8N7X0 1667 aa12.45□□□□□ -0.42
ABCD4-220ENST00000553998 ALKQ9UM73 1620 aa12.45□□□□□ -0.42
ABCD4-220ENST00000553998 WASHC2CQ9Y4E1 1318 aa12.45□□□□□ -0.42
ABCD4-220ENST00000553998 NPHP4O75161 1426 aaPredicted RBP12.45□□□□□ -0.42
ABCD4-220ENST00000553998 CEP162Q5TB80 1403 aa12.44□□□□□ -0.42
ABCD4-220ENST00000553998 KDM5DQ9BY66 1539 aa12.43□□□□□ -0.42
ABCD4-220ENST00000553998 DEPDC5O75140 1603 aa12.41□□□□□ -0.42
ABCD4-220ENST00000553998 TIAM1Q13009 1591 aa12.41□□□□□ -0.42
ABCD4-220ENST00000553998 PHF23Q9BUL5 403 aaPredicted RBP12.41□□□□□ -0.42
ABCD4-220ENST00000553998 UGGT1Q9NYU2 1555 aa12.41□□□□□ -0.42
ABCD4-220ENST00000553998 LRRC7Q96NW7 1537 aa12.4□□□□□ -0.42
ABCD4-220ENST00000553998 CCDC141Q6ZP82 1450 aa12.4□□□□□ -0.43
ABCD4-220ENST00000553998 RGS17Q9UGC6 210 aaPredicted RBP12.39□□□□□ -0.43
ABCD4-220ENST00000553998 POLR1AO95602 1720 aaPredicted RBP12.39□□□□□ -0.43
ABCD4-220ENST00000553998 EHBP1L1Q8N3D4 1523 aa12.37□□□□□ -0.43
ABCD4-220ENST00000553998 TSPY4P0CV99 314 aa12.36□□□□□ -0.43
ABCD4-220ENST00000553998 TSPY10P0CW01 314 aa12.36□□□□□ -0.43
ABCD4-220ENST00000553998 CAMSAP2Q08AD1 1489 aa12.34□□□□□ -0.43
ABCD4-220ENST00000553998 NCOA2Q15596 1464 aa12.34□□□□□ -0.43
ABCD4-220ENST00000553998 IQGAP1P46940 1657 aa12.32□□□□□ -0.44
ABCD4-220ENST00000553998 ABCC3O15438 1527 aa12.32□□□□□ -0.44
ABCD4-220ENST00000553998 ARHGEF5Q12774 1597 aa12.32□□□□□ -0.44
ABCD4-220ENST00000553998 FAM135BQ49AJ0 1406 aa12.32□□□□□ -0.44
ABCD4-220ENST00000553998 LTKP29376 864 aa12.32□□□□□ -0.44
ABCD4-220ENST00000553998 ERVK-7P63135 1459 aa12.32□□□□□ -0.44
ABCD4-220ENST00000553998 ARHGAP23Q9P227 1491 aa12.32□□□□□ -0.44
ABCD4-220ENST00000553998 SYNMO15061 1565 aa12.31□□□□□ -0.44
ABCD4-220ENST00000553998 RNF17Q9BXT8 1623 aaKnown RBP12.31□□□□□ -0.44
ABCD4-220ENST00000553998 STRCP1A6NGW2 1772 aa12.3□□□□□ -0.44
ABCD4-220ENST00000553998 SCAF11Q99590 1463 aaKnown RBP12.3□□□□□ -0.44
ABCD4-220ENST00000553998 TXNDC2Q86VQ3 553 aa12.3□□□□□ -0.44
ABCD4-220ENST00000553998 SLIT1O75093 1534 aa12.3□□□□□ -0.44
ABCD4-220ENST00000553998 ARHGAP31Q2M1Z3 1444 aa12.29□□□□□ -0.44
ABCD4-220ENST00000553998 POTEAQ6S8J7 498 aa12.28□□□□□ -0.44
ABCD4-220ENST00000553998 ZC3H13Q5T200 1668 aaKnown RBP12.28□□□□□ -0.44
ABCD4-220ENST00000553998 MAST1Q9Y2H9 1570 aa12.27□□□□□ -0.44
ABCD4-220ENST00000553998 SENP3Q9H4L4 574 aaPredicted RBP12.27□□□□□ -0.45
ABCD4-220ENST00000553998 EID1Q9Y6B2 187 aa12.26□□□□□ -0.45
ABCD4-220ENST00000553998 MROH1Q8NDA8 1641 aa12.26□□□□□ -0.45
ABCD4-220ENST00000553998 KCNA6P17658 529 aa12.25□□□□□ -0.45
ABCD4-220ENST00000553998 TMEM2Q9UHN6 1383 aa12.25□□□□□ -0.45
ABCD4-220ENST00000553998 EIF2AK4Q9P2K8 1649 aaKnown RBP12.25□□□□□ -0.45
ABCD4-220ENST00000553998 UBR1Q8IWV7 1749 aa12.24□□□□□ -0.45
ABCD4-220ENST00000553998 TMEM94Q12767 1356 aa12.23□□□□□ -0.45
ABCD4-220ENST00000553998 LOC105371045A0A1W2PR82 267 aa12.22□□□□□ -0.45
ABCD4-220ENST00000553998 DUOX2Q9NRD8 1548 aa12.21□□□□□ -0.45
ABCD4-220ENST00000553998 LRRC9Q6ZRR7 1453 aa12.21□□□□□ -0.45
ABCD4-220ENST00000553998 MYOM3Q5VTT5 1437 aa12.2□□□□□ -0.46
ABCD4-220ENST00000553998 IDI1Q13907 227 aa12.2□□□□□ -0.46
ABCD4-220ENST00000553998 TET3O43151 1660 aa12.19□□□□□ -0.46
ABCD4-220ENST00000553998 PROSER2Q86WR7 435 aaPredicted RBP12.19□□□□□ -0.46
ABCD4-220ENST00000553998 PRDM15P57071 1507 aaPredicted RBP12.19□□□□□ -0.46
ABCD4-220ENST00000553998 ERBINQ96RT1 1412 aa12.19□□□□□ -0.46
ABCD4-220ENST00000553998 MAP3K1Q13233 1512 aa12.18□□□□□ -0.46
ABCD4-220ENST00000553998 XIRP1Q702N8 1843 aaKnown RBP12.18□□□□□ -0.46
ABCD4-220ENST00000553998 KANK4Q5T7N3 995 aaPredicted RBP12.17□□□□□ -0.46
ABCD4-220ENST00000553998 SLAIN2Q9P270 581 aa12.17□□□□□ -0.46
ABCD4-220ENST00000553998 KIF15Q9NS87 1388 aa12.17□□□□□ -0.46
ABCD4-220ENST00000553998 SLC26A8Q96RN1 970 aa12.16□□□□□ -0.46
ABCD4-220ENST00000553998 STAG3Q9UJ98 1225 aa12.16□□□□□ -0.46
ABCD4-220ENST00000553998 JCADQ9P266 1359 aa12.16□□□□□ -0.46
ABCD4-220ENST00000553998 LMTK2Q8IWU2 1503 aa12.16□□□□□ -0.46
ABCD4-220ENST00000553998 NKTRP30414 1462 aaKnown RBP12.15□□□□□ -0.46
ABCD4-220ENST00000553998 ABCC5O15440 1437 aa12.15□□□□□ -0.46
ABCD4-220ENST00000553998 NOS1P29475 1434 aa12.15□□□□□ -0.46
ABCD4-220ENST00000553998 RRP7BPQ9NSQ0 103 aa12.15□□□□□ -0.46
ABCD4-220ENST00000553998 SLC52A1Q9NWF4 448 aa12.15□□□□□ -0.46
ABCD4-220ENST00000553998 KDM5AP29375 1690 aaKnown RBP12.15□□□□□ -0.46
ABCD4-220ENST00000553998 EFCAB6Q5THR3 1501 aa12.15□□□□□ -0.46
ABCD4-220ENST00000553998 VPS8Q8N3P4 1428 aa12.14□□□□□ -0.47
ABCD4-220ENST00000553998 RBM33Q96EV2 1170 aaKnown RBP12.14□□□□□ -0.47
ABCD4-220ENST00000553998 PIK3C2BO00750 1634 aa12.14□□□□□ -0.47
ABCD4-220ENST00000553998 KANK1Q14678 1352 aa12.14□□□□□ -0.47
ABCD4-220ENST00000553998 CEP152O94986 1710 aa12.14□□□□□ -0.47
ABCD4-220ENST00000553998 ROBO1Q9Y6N7 1651 aa12.13□□□□□ -0.47
ABCD4-220ENST00000553998 NCOA3Q9Y6Q9 1424 aa12.13□□□□□ -0.47
ABCD4-220ENST00000553998 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.13□□□□□ -0.472e-10■■□□□ 13.2
ABCD4-220ENST00000553998 MSH6P52701 1360 aa12.13□□□□□ -0.47
ABCD4-220ENST00000553998 NWD1Q149M9 1564 aa12.13□□□□□ -0.47
ABCD4-220ENST00000553998 UPF1Q92900 1129 aaKnown RBP eCLIP12.12□□□□□ -0.47
ABCD4-220ENST00000553998 SPATA31A6Q5VVP1 1343 aa12.11□□□□□ -0.47
ABCD4-220ENST00000553998 TBX22Q9Y458 520 aa12.11□□□□□ -0.47
ABCD4-220ENST00000553998 FGD6Q6ZV73 1430 aa12.11□□□□□ -0.47
ABCD4-220ENST00000553998 PLEKHG1Q9ULL1 1385 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms