RNA–Protein interactions for RNA: ENST00000553605.1

PRPF39-204, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-204ENST00000553605 PLEKHH2Q8IVE3 1493 aa22.77■■□□□ 1.24
PRPF39-204ENST00000553605 TNRQ92752 1358 aa22.76■■□□□ 1.23
PRPF39-204ENST00000553605 VWDEQ8N2E2 1590 aa22.76■■□□□ 1.23
PRPF39-204ENST00000553605 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.75■■□□□ 1.23
PRPF39-204ENST00000553605 THEMISQ8N1K5 641 aaPredicted RBP22.74■■□□□ 1.23
PRPF39-204ENST00000553605 RGS17Q9UGC6 210 aaPredicted RBP22.73■■□□□ 1.23
PRPF39-204ENST00000553605 ADGBQ8N7X0 1667 aa22.71■■□□□ 1.23
PRPF39-204ENST00000553605 NPHP4O75161 1426 aaPredicted RBP22.71■■□□□ 1.23
PRPF39-204ENST00000553605 MED14O60244 1454 aa22.69■■□□□ 1.22
PRPF39-204ENST00000553605 CCNB3Q8WWL7 1395 aa22.68■■□□□ 1.22
PRPF39-204ENST00000553605 PZPP20742 1482 aa22.67■■□□□ 1.22
PRPF39-204ENST00000553605 DHX29Q7Z478 1369 aaKnown RBP22.67■■□□□ 1.22
PRPF39-204ENST00000553605 KIF3BO15066 747 aa22.66■■□□□ 1.22
PRPF39-204ENST00000553605 LRRC7Q96NW7 1537 aa22.65■■□□□ 1.22
PRPF39-204ENST00000553605 FYCO1Q9BQS8 1478 aa22.65■■□□□ 1.22
PRPF39-204ENST00000553605 MIA2Q96PC5 1412 aa22.65■■□□□ 1.22
PRPF39-204ENST00000553605 DEPDC5O75140 1603 aa22.64■■□□□ 1.22
PRPF39-204ENST00000553605 WASHC2CQ9Y4E1 1318 aa22.64■■□□□ 1.22
PRPF39-204ENST00000553605 UGGT1Q9NYU2 1555 aa22.63■■□□□ 1.21
PRPF39-204ENST00000553605 ZNF644Q9H582 1327 aaPredicted RBP22.63■■□□□ 1.21
PRPF39-204ENST00000553605 FAM135AQ9P2D6 1515 aa22.63■■□□□ 1.21
PRPF39-204ENST00000553605 NLRP1Q9C000 1473 aa22.63■■□□□ 1.21
PRPF39-204ENST00000553605 RTEL1-TNFRSF6BF6WH68 1400 aa22.63■■□□□ 1.21
PRPF39-204ENST00000553605 KDM5DQ9BY66 1539 aa22.61■■□□□ 1.21
PRPF39-204ENST00000553605 IQGAP1P46940 1657 aa22.6■■□□□ 1.21
PRPF39-204ENST00000553605 STRCP1A6NGW2 1772 aa22.6■■□□□ 1.21
PRPF39-204ENST00000553605 RNF17Q9BXT8 1623 aaKnown RBP22.6■■□□□ 1.21
PRPF39-204ENST00000553605 MBD5Q9P267 1494 aa22.6■■□□□ 1.21
PRPF39-204ENST00000553605 POTEAQ6S8J7 498 aa22.57■■□□□ 1.2
PRPF39-204ENST00000553605 SYNMO15061 1565 aa22.55■■□□□ 1.2
PRPF39-204ENST00000553605 MTUS2Q5JR59 1369 aa22.53■■□□□ 1.2
PRPF39-204ENST00000553605 TIAM1Q13009 1591 aa22.47■■□□□ 1.19
PRPF39-204ENST00000553605 FAM135BQ49AJ0 1406 aa22.46■■□□□ 1.19
PRPF39-204ENST00000553605 RSPH4AQ5TD94 716 aa22.45■■□□□ 1.18
PRPF39-204ENST00000553605 ZC3H13Q5T200 1668 aaKnown RBP22.44■■□□□ 1.18
PRPF39-204ENST00000553605 CCDC141Q6ZP82 1450 aa22.44■■□□□ 1.18
PRPF39-204ENST00000553605 CHIC1Q5VXU3 224 aa22.42■■□□□ 1.18
PRPF39-204ENST00000553605 SCAF11Q99590 1463 aaKnown RBP22.41■■□□□ 1.18
PRPF39-204ENST00000553605 LTKP29376 864 aa22.41■■□□□ 1.18
PRPF39-204ENST00000553605 TXNDC2Q86VQ3 553 aa22.41■■□□□ 1.18
PRPF39-204ENST00000553605 XIRP1Q702N8 1843 aaKnown RBP22.39■■□□□ 1.17
PRPF39-204ENST00000553605 ERVK-7P63135 1459 aa22.39■■□□□ 1.17
PRPF39-204ENST00000553605 TSPY4P0CV99 314 aa22.38■■□□□ 1.17
PRPF39-204ENST00000553605 TSPY10P0CW01 314 aa22.38■■□□□ 1.17
PRPF39-204ENST00000553605 CEP162Q5TB80 1403 aa22.37■■□□□ 1.17
PRPF39-204ENST00000553605 ABCC3O15438 1527 aa22.36■■□□□ 1.17
PRPF39-204ENST00000553605 EHBP1L1Q8N3D4 1523 aa22.36■■□□□ 1.17
PRPF39-204ENST00000553605 UBR1Q8IWV7 1749 aa22.35■■□□□ 1.17
PRPF39-204ENST00000553605 EID1Q9Y6B2 187 aa22.35■■□□□ 1.17
PRPF39-204ENST00000553605 CAMSAP2Q08AD1 1489 aa22.34■■□□□ 1.17
PRPF39-204ENST00000553605 NCOA2Q15596 1464 aa22.34■■□□□ 1.17
PRPF39-204ENST00000553605 SETD1AO15047 1707 aaKnown RBP22.34■■□□□ 1.17
PRPF39-204ENST00000553605 ARHGAP23Q9P227 1491 aa22.33■■□□□ 1.16
PRPF39-204ENST00000553605 TMEM94Q12767 1356 aa22.32■■□□□ 1.16
PRPF39-204ENST00000553605 SLIT1O75093 1534 aa22.31■■□□□ 1.16
PRPF39-204ENST00000553605 ROBO1Q9Y6N7 1651 aa22.3■■□□□ 1.16
PRPF39-204ENST00000553605 CFAP65Q6ZU64 1925 aaKnown RBP22.28■■□□□ 1.16
PRPF39-204ENST00000553605 UPF1Q92900 1129 aaKnown RBP eCLIP22.28■■□□□ 1.16
PRPF39-204ENST00000553605 KCNA6P17658 529 aa22.27■■□□□ 1.16
PRPF39-204ENST00000553605 PROSER2Q86WR7 435 aaPredicted RBP22.27■■□□□ 1.16
PRPF39-204ENST00000553605 ARHGEF5Q12774 1597 aa22.26■■□□□ 1.15
PRPF39-204ENST00000553605 RBM33Q96EV2 1170 aaKnown RBP22.26■■□□□ 1.15
PRPF39-204ENST00000553605 JCADQ9P266 1359 aa22.25■■□□□ 1.15
PRPF39-204ENST00000553605 LRRC9Q6ZRR7 1453 aa22.23■■□□□ 1.15
PRPF39-204ENST00000553605 TMEM2Q9UHN6 1383 aa22.23■■□□□ 1.15
PRPF39-204ENST00000553605 STAG3Q9UJ98 1225 aa22.22■■□□□ 1.15
PRPF39-204ENST00000553605 MAP3K1Q13233 1512 aa22.21■■□□□ 1.15
PRPF39-204ENST00000553605 MROH1Q8NDA8 1641 aa22.21■■□□□ 1.15
PRPF39-204ENST00000553605 EIF2AK4Q9P2K8 1649 aaKnown RBP22.21■■□□□ 1.15
PRPF39-204ENST00000553605 CEP152O94986 1710 aa22.21■■□□□ 1.15
PRPF39-204ENST00000553605 SLAIN2Q9P270 581 aa22.21■■□□□ 1.15
PRPF39-204ENST00000553605 SLC26A8Q96RN1 970 aa22.2■■□□□ 1.14
PRPF39-204ENST00000553605 TRIM52Q96A61 297 aa22.19■■□□□ 1.14
PRPF39-204ENST00000553605 PHLPP1O60346 1717 aa22.18■■□□□ 1.14
PRPF39-204ENST00000553605 ARHGAP31Q2M1Z3 1444 aa22.18■■□□□ 1.14
PRPF39-204ENST00000553605 ZNF772Q68DY9 489 aaPredicted RBP22.18■■□□□ 1.14
PRPF39-204ENST00000553605 MAST1Q9Y2H9 1570 aa22.17■■□□□ 1.14
PRPF39-204ENST00000553605 PRDM15P57071 1507 aaPredicted RBP22.17■■□□□ 1.14
PRPF39-204ENST00000553605 MSH6P52701 1360 aa22.17■■□□□ 1.14
PRPF39-204ENST00000553605 PIK3C2BO00750 1634 aa22.16■■□□□ 1.14
PRPF39-204ENST00000553605 MEX3CQ5U5Q3 659 aaKnown RBP22.15■■□□□ 1.14
PRPF39-204ENST00000553605 TET3O43151 1660 aa22.14■■□□□ 1.13
PRPF39-204ENST00000553605 SPATA31A6Q5VVP1 1343 aa22.13■■□□□ 1.13
PRPF39-204ENST00000553605 NKTRP30414 1462 aaKnown RBP22.12■■□□□ 1.13
PRPF39-204ENST00000553605 IDI1Q13907 227 aa22.12■■□□□ 1.13
PRPF39-204ENST00000553605 EFCAB6Q5THR3 1501 aa22.11■■□□□ 1.13
PRPF39-204ENST00000553605 LRP6O75581 1613 aa22.1■■□□□ 1.13
PRPF39-204ENST00000553605 RXRBP28702 533 aa22.1■■□□□ 1.13
PRPF39-204ENST00000553605 DUOX2Q9NRD8 1548 aa22.1■■□□□ 1.13
PRPF39-204ENST00000553605 BCANQ96GW7 911 aa22.09■■□□□ 1.13
PRPF39-204ENST00000553605 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.09■■□□□ 1.13
PRPF39-204ENST00000553605 COL16A1Q07092 1604 aaPredicted RBP22.08■■□□□ 1.13
PRPF39-204ENST00000553605 NWD1Q149M9 1564 aa22.08■■□□□ 1.12
PRPF39-204ENST00000553605 FGD6Q6ZV73 1430 aa22.07■■□□□ 1.12
PRPF39-204ENST00000553605 KDM5AP29375 1690 aaKnown RBP22.07■■□□□ 1.12
PRPF39-204ENST00000553605 KIF15Q9NS87 1388 aa22.02■■□□□ 1.12
PRPF39-204ENST00000553605 SRCAPQ6ZRS2 3230 aa22.02■■□□□ 1.12
PRPF39-204ENST00000553605 RRP7BPQ9NSQ0 103 aa22.02■■□□□ 1.12
PRPF39-204ENST00000553605 KANK1Q14678 1352 aa22.01■■□□□ 1.11
PRPF39-204ENST00000553605 ERBINQ96RT1 1412 aa22■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms