RNA–Protein interactions for RNA: ENST00000553335.5

TMEM260-204, Transcript of transmembrane protein 260, humanhuman

TSL 3

Gene TMEM260, Length 560 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-204ENST00000553335 ATF5Q9Y2D1 282 aaPredicted RBP14.65□□□□□ -0.06
TMEM260-204ENST00000553335 ROCK1Q13464 1354 aa14.64□□□□□ -0.07
TMEM260-204ENST00000553335 GCC2Q8IWJ2 1684 aa14.63□□□□□ -0.07
TMEM260-204ENST00000553335 ABCA6Q8N139 1617 aa14.62□□□□□ -0.07
TMEM260-204ENST00000553335 NCOA1Q15788 1441 aa14.61□□□□□ -0.07
TMEM260-204ENST00000553335 DIP2CQ9Y2E4 1556 aa14.6□□□□□ -0.07
TMEM260-204ENST00000553335 PCGF6Q9BYE7 350 aa14.6□□□□□ -0.07
TMEM260-204ENST00000553335 DUOX2Q9NRD8 1548 aa14.6□□□□□ -0.07
TMEM260-204ENST00000553335 RRP7BPQ9NSQ0 103 aa14.59□□□□□ -0.07
TMEM260-204ENST00000553335 ARHGEF40Q8TER5 1519 aa14.59□□□□□ -0.07
TMEM260-204ENST00000553335 KIF15Q9NS87 1388 aa14.59□□□□□ -0.07
TMEM260-204ENST00000553335 YEATS2Q9ULM3 1422 aa14.58□□□□□ -0.07
TMEM260-204ENST00000553335 FKBP8Q14318 412 aa14.58□□□□□ -0.08
TMEM260-204ENST00000553335 HFM1A2PYH4 1435 aa14.58□□□□□ -0.08
TMEM260-204ENST00000553335 ATP10AO60312 1499 aa14.57□□□□□ -0.08
TMEM260-204ENST00000553335 A2MP01023 1474 aa14.57□□□□□ -0.08
TMEM260-204ENST00000553335 REREQ9P2R6 1566 aa14.56□□□□□ -0.08
TMEM260-204ENST00000553335 EIF2AK4Q9P2K8 1649 aaKnown RBP14.56□□□□□ -0.08
TMEM260-204ENST00000553335 NAIPQ13075 1403 aa14.56□□□□□ -0.08
TMEM260-204ENST00000553335 DHX29Q7Z478 1369 aaKnown RBP14.55□□□□□ -0.08
TMEM260-204ENST00000553335 ERBINQ96RT1 1412 aa14.55□□□□□ -0.08
TMEM260-204ENST00000553335 SETD5Q9C0A6 1442 aa14.55□□□□□ -0.08
TMEM260-204ENST00000553335 ANKRD50Q9ULJ7 1429 aa14.54□□□□□ -0.08
TMEM260-204ENST00000553335 BCORL1Q5H9F3 1711 aa14.53□□□□□ -0.08
TMEM260-204ENST00000553335 ACIN1Q9UKV3 1341 aaKnown RBP14.52□□□□□ -0.08
TMEM260-204ENST00000553335 AGLP35573 1532 aa14.5□□□□□ -0.09
TMEM260-204ENST00000553335 KDM4FA0A1W2PPD8 638 aa14.49□□□□□ -0.09
TMEM260-204ENST00000553335 SIGLEC1Q9BZZ2 1709 aa14.49□□□□□ -0.09
TMEM260-204ENST00000553335 RAB3GAP2Q9H2M9 1393 aa14.48□□□□□ -0.09
TMEM260-204ENST00000553335 HRCP23327 699 aa14.48□□□□□ -0.09
TMEM260-204ENST00000553335 DEPDC5O75140 1603 aa14.48□□□□□ -0.09
TMEM260-204ENST00000553335 RNF17Q9BXT8 1623 aaKnown RBP14.48□□□□□ -0.09
TMEM260-204ENST00000553335 UNC13BO14795 1591 aa14.47□□□□□ -0.09
TMEM260-204ENST00000553335 KIF3BO15066 747 aa14.47□□□□□ -0.09
TMEM260-204ENST00000553335 ARID4BQ4LE39 1312 aaPredicted RBP14.46□□□□□ -0.09
TMEM260-204ENST00000553335 PRDM15P57071 1507 aaPredicted RBP14.43□□□□□ -0.1
TMEM260-204ENST00000553335 GGT6Q6P531 493 aa14.43□□□□□ -0.1
TMEM260-204ENST00000553335 TRIM52Q96A61 297 aa14.43□□□□□ -0.1
TMEM260-204ENST00000553335 KANK1Q14678 1352 aa14.43□□□□□ -0.1
TMEM260-204ENST00000553335 ZC3H13Q5T200 1668 aaKnown RBP14.42□□□□□ -0.1
TMEM260-204ENST00000553335 IQGAP3Q86VI3 1631 aa14.41□□□□□ -0.1
TMEM260-204ENST00000553335 MROH1Q8NDA8 1641 aa14.41□□□□□ -0.1
TMEM260-204ENST00000553335 CEP152O94986 1710 aa14.41□□□□□ -0.1
TMEM260-204ENST00000553335 KDM5DQ9BY66 1539 aa14.41□□□□□ -0.1
TMEM260-204ENST00000553335 FAM135AQ9P2D6 1515 aa14.41□□□□□ -0.1
TMEM260-204ENST00000553335 NUP155O75694 1391 aa14.4□□□□□ -0.1
TMEM260-204ENST00000553335 MLECQ14165 292 aa14.4□□□□□ -0.1
TMEM260-204ENST00000553335 FER1L4A9Z1Z3 1794 aa14.39□□□□□ -0.11
TMEM260-204ENST00000553335 ESF1Q9H501 851 aaKnown RBP14.38□□□□□ -0.11
TMEM260-204ENST00000553335 CLTCQ00610 1675 aaKnown RBP14.38□□□□□ -0.11
TMEM260-204ENST00000553335 VWDEQ8N2E2 1590 aa14.38□□□□□ -0.11
TMEM260-204ENST00000553335 TET3O43151 1660 aa14.37□□□□□ -0.11
TMEM260-204ENST00000553335 ZNF219Q9P2Y4 722 aaPredicted RBP14.37□□□□□ -0.11
TMEM260-204ENST00000553335 WASHC2CQ9Y4E1 1318 aa14.37□□□□□ -0.11
TMEM260-204ENST00000553335 CAMSAP1Q5T5Y3 1602 aa14.36□□□□□ -0.11
TMEM260-204ENST00000553335 MROH2AA6NES4 1674 aa14.36□□□□□ -0.11
TMEM260-204ENST00000553335 LMTK2Q8IWU2 1503 aa14.36□□□□□ -0.11
TMEM260-204ENST00000553335 ADAMTSL3P82987 1691 aa14.35□□□□□ -0.11
TMEM260-204ENST00000553335 ABCC3O15438 1527 aa14.35□□□□□ -0.11
TMEM260-204ENST00000553335 PZPP20742 1482 aa14.34□□□□□ -0.11
TMEM260-204ENST00000553335 CNTLNQ9NXG0 1405 aa14.33□□□□□ -0.11
TMEM260-204ENST00000553335 MPHOSPH9Q99550 1183 aa14.33□□□□□ -0.12
TMEM260-204ENST00000553335 MADDQ8WXG6 1647 aa14.33□□□□□ -0.12
TMEM260-204ENST00000553335 E9PCH4 1651 aa14.33□□□□□ -0.12
TMEM260-204ENST00000553335 RIMS1Q86UR5 1692 aaKnown RBP14.33□□□□□ -0.12
TMEM260-204ENST00000553335 EFCAB6Q5THR3 1501 aa14.31□□□□□ -0.12
TMEM260-204ENST00000553335 CFAP65Q6ZU64 1925 aaKnown RBP14.31□□□□□ -0.12
TMEM260-204ENST00000553335 AMER1Q5JTC6 1135 aaPredicted RBP14.31□□□□□ -0.12
TMEM260-204ENST00000553335 DHX57Q6P158 1386 aaKnown RBP14.29□□□□□ -0.12
TMEM260-204ENST00000553335 RPRD2Q5VT52 1461 aaKnown RBP14.29□□□□□ -0.12
TMEM260-204ENST00000553335 C3P01024 1663 aa14.29□□□□□ -0.12
TMEM260-204ENST00000553335 PKD2Q13563 968 aa14.28□□□□□ -0.12
TMEM260-204ENST00000553335 ARHGAP31Q2M1Z3 1444 aa14.28□□□□□ -0.12
TMEM260-204ENST00000553335 SPHKAPQ2M3C7 1700 aa14.28□□□□□ -0.12
TMEM260-204ENST00000553335 PREX1Q8TCU6 1659 aa14.27□□□□□ -0.12
TMEM260-204ENST00000553335 ZMYM3Q14202 1370 aa14.27□□□□□ -0.12
TMEM260-204ENST00000553335 RTN4Q9NQC3 1192 aaKnown RBP14.27□□□□□ -0.13
TMEM260-204ENST00000553335 NPATQ14207 1427 aa14.24□□□□□ -0.13
TMEM260-204ENST00000553335 CCER1Q8TC90 406 aaPredicted RBP14.24□□□□□ -0.13
TMEM260-204ENST00000553335 SPATA31D1Q6ZQQ2 1576 aa14.22□□□□□ -0.13
TMEM260-204ENST00000553335 TRPM2O94759 1503 aa14.2□□□□□ -0.14
TMEM260-204ENST00000553335 KIF1BO60333 1816 aa14.2□□□□□ -0.14
TMEM260-204ENST00000553335 CLSPNQ9HAW4 1339 aa14.2□□□□□ -0.14
TMEM260-204ENST00000553335 PTPRMP28827 1452 aa14.2□□□□□ -0.14
TMEM260-204ENST00000553335 ERVK-7P63135 1459 aa14.2□□□□□ -0.14
TMEM260-204ENST00000553335 PTPRTO14522 1441 aa14.2□□□□□ -0.14
TMEM260-204ENST00000553335 NOS1P29475 1434 aa14.19□□□□□ -0.14
TMEM260-204ENST00000553335 CEBPAP49715 358 aaPredicted RBP14.19□□□□□ -0.14
TMEM260-204ENST00000553335 ANKRD30BQ9BXX2 1392 aa14.19□□□□□ -0.14
TMEM260-204ENST00000553335 SYNMO15061 1565 aa14.18□□□□□ -0.14
TMEM260-204ENST00000553335 FBXO31Q5XUX0 539 aaPredicted RBP14.18□□□□□ -0.14
TMEM260-204ENST00000553335 SETD1BQ9UPS6 1966 aaKnown RBP14.18□□□□□ -0.14
TMEM260-204ENST00000553335 CCDC144AA2RUR9 1427 aa14.17□□□□□ -0.14
TMEM260-204ENST00000553335 PIK3C2BO00750 1634 aa14.16□□□□□ -0.14
TMEM260-204ENST00000553335 CLTCL1P53675 1640 aa14.16□□□□□ -0.14
TMEM260-204ENST00000553335 SLC52A1Q9NWF4 448 aa14.16□□□□□ -0.14
TMEM260-204ENST00000553335 TNRQ92752 1358 aa14.16□□□□□ -0.14
TMEM260-204ENST00000553335 PLA2R1Q13018 1463 aa14.16□□□□□ -0.14
TMEM260-204ENST00000553335 RNF39Q9H2S5 420 aa14.15□□□□□ -0.14
TMEM260-204ENST00000553335 MYO3AQ8NEV4 1616 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms