RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 HSPA2P54652 639 aa23.5■■□□□ 1.35
SHMT2-204ENST00000553324 FAM135AQ9P2D6 1515 aa23.49■■□□□ 1.35
SHMT2-204ENST00000553324 MROH2AA6NES4 1674 aa23.49■■□□□ 1.35
SHMT2-204ENST00000553324 C3P01024 1663 aa23.48■■□□□ 1.35
SHMT2-204ENST00000553324 NCOA1Q15788 1441 aa23.47■■□□□ 1.35
SHMT2-204ENST00000553324 ERBINQ96RT1 1412 aa23.47■■□□□ 1.35
SHMT2-204ENST00000553324 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.46■■□□□ 1.35
SHMT2-204ENST00000553324 CLTCQ00610 1675 aaKnown RBP23.44■■□□□ 1.34
SHMT2-204ENST00000553324 KDM5DQ9BY66 1539 aa23.43■■□□□ 1.34
SHMT2-204ENST00000553324 PTPRKQ15262 1439 aa23.43■■□□□ 1.34
SHMT2-204ENST00000553324 PREX1Q8TCU6 1659 aa23.43■■□□□ 1.34
SHMT2-204ENST00000553324 EIF2AK4Q9P2K8 1649 aaKnown RBP23.43■■□□□ 1.34
SHMT2-204ENST00000553324 CROCC2H7BZ55 1655 aa23.42■■□□□ 1.34
SHMT2-204ENST00000553324 DMRT2Q9Y5R5 561 aa23.41■■□□□ 1.34
SHMT2-204ENST00000553324 ADGRL2O95490 1459 aa23.41■■□□□ 1.34
SHMT2-204ENST00000553324 RNF17Q9BXT8 1623 aaKnown RBP23.38■■□□□ 1.33
SHMT2-204ENST00000553324 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.38■■□□□ 1.33
SHMT2-204ENST00000553324 KANK1Q14678 1352 aa23.38■■□□□ 1.33
SHMT2-204ENST00000553324 PZPP20742 1482 aa23.37■■□□□ 1.33
SHMT2-204ENST00000553324 FBXO31Q5XUX0 539 aaPredicted RBP23.37■■□□□ 1.33
SHMT2-204ENST00000553324 ROCK1Q13464 1354 aa23.36■■□□□ 1.33
SHMT2-204ENST00000553324 ITGAEP38570 1179 aa23.34■■□□□ 1.33
SHMT2-204ENST00000553324 TNRQ92752 1358 aa23.34■■□□□ 1.33
SHMT2-204ENST00000553324 ANKRD50Q9ULJ7 1429 aa23.33■■□□□ 1.33
SHMT2-204ENST00000553324 ABCC3O15438 1527 aa23.33■■□□□ 1.32
SHMT2-204ENST00000553324 RRBP1Q9P2E9 1410 aaKnown RBP23.32■■□□□ 1.32
SHMT2-204ENST00000553324 ZC3H13Q5T200 1668 aaKnown RBP23.29■■□□□ 1.32
SHMT2-204ENST00000553324 ARHGAP31Q2M1Z3 1444 aa23.28■■□□□ 1.32
SHMT2-204ENST00000553324 MROH1Q8NDA8 1641 aa23.28■■□□□ 1.32
SHMT2-204ENST00000553324 PRDM15P57071 1507 aaPredicted RBP23.28■■□□□ 1.32
SHMT2-204ENST00000553324 PKD2Q13563 968 aa23.26■■□□□ 1.31
SHMT2-204ENST00000553324 THEMISQ8N1K5 641 aaPredicted RBP23.26■■□□□ 1.31
SHMT2-204ENST00000553324 A2ML1A8K2U0 1454 aa23.25■■□□□ 1.31
SHMT2-204ENST00000553324 NLRP1Q9C000 1473 aa23.24■■□□□ 1.31
SHMT2-204ENST00000553324 DEPDC5O75140 1603 aa23.23■■□□□ 1.31
SHMT2-204ENST00000553324 CEP170BQ9Y4F5 1589 aaPredicted RBP23.23■■□□□ 1.31
SHMT2-204ENST00000553324 PTPRTO14522 1441 aa23.22■■□□□ 1.31
SHMT2-204ENST00000553324 MYO3AQ8NEV4 1616 aa23.22■■□□□ 1.31
SHMT2-204ENST00000553324 PLA2R1Q13018 1463 aa23.21■■□□□ 1.31
SHMT2-204ENST00000553324 LMTK2Q8IWU2 1503 aa23.21■■□□□ 1.31
SHMT2-204ENST00000553324 CAMSAP1Q5T5Y3 1602 aa23.2■■□□□ 1.3
SHMT2-204ENST00000553324 ERVK-7P63135 1459 aa23.2■■□□□ 1.3
SHMT2-204ENST00000553324 SPATA31D1Q6ZQQ2 1576 aa23.19■■□□□ 1.3
SHMT2-204ENST00000553324 NCKAP5LQ9HCH0 1330 aa23.19■■□□□ 1.3
SHMT2-204ENST00000553324 ZNF142P52746 1687 aaPredicted RBP23.18■■□□□ 1.3
SHMT2-204ENST00000553324 VWDEQ8N2E2 1590 aa23.18■■□□□ 1.3
SHMT2-204ENST00000553324 ANKLE2Q86XL3 938 aa23.17■■□□□ 1.3
SHMT2-204ENST00000553324 STRCQ7RTU9 1775 aa23.16■■□□□ 1.3
SHMT2-204ENST00000553324 CEP152O94986 1710 aa23.15■■□□□ 1.3
SHMT2-204ENST00000553324 SLC52A1Q9NWF4 448 aa23.13■■□□□ 1.29
SHMT2-204ENST00000553324 UGGT1Q9NYU2 1555 aa23.13■■□□□ 1.29
SHMT2-204ENST00000553324 NUP155O75694 1391 aa23.13■■□□□ 1.29
SHMT2-204ENST00000553324 STAG3Q9UJ98 1225 aa23.11■■□□□ 1.29
SHMT2-204ENST00000553324 RPRD2Q5VT52 1461 aaKnown RBP23.11■■□□□ 1.29
SHMT2-204ENST00000553324 IDI1Q13907 227 aa23.09■■□□□ 1.29
SHMT2-204ENST00000553324 EFCAB6Q5THR3 1501 aa23.08■■□□□ 1.29
SHMT2-204ENST00000553324 CERKQ8TCT0 537 aa23.08■■□□□ 1.29
SHMT2-204ENST00000553324 NOS1P29475 1434 aa23.08■■□□□ 1.28
SHMT2-204ENST00000553324 NAIPQ13075 1403 aa23.07■■□□□ 1.28
SHMT2-204ENST00000553324 UNC13BO14795 1591 aa23.06■■□□□ 1.28
SHMT2-204ENST00000553324 CFAP65Q6ZU64 1925 aaKnown RBP23.04■■□□□ 1.28
SHMT2-204ENST00000553324 ILDR1Q86SU0 546 aaPredicted RBP23.04■■□□□ 1.28
SHMT2-204ENST00000553324 FBXO41Q8TF61 875 aa23.04■■□□□ 1.28
SHMT2-204ENST00000553324 EID1Q9Y6B2 187 aa23.04■■□□□ 1.28
SHMT2-204ENST00000553324 HFM1A2PYH4 1435 aa23.04■■□□□ 1.28
SHMT2-204ENST00000553324 TET3O43151 1660 aa23.01■■□□□ 1.27
SHMT2-204ENST00000553324 TXNDC2Q86VQ3 553 aa23.01■■□□□ 1.27
SHMT2-204ENST00000553324 TRIM52Q96A61 297 aa22.99■■□□□ 1.27
SHMT2-204ENST00000553324 IQGAP3Q86VI3 1631 aa22.99■■□□□ 1.27
SHMT2-204ENST00000553324 ACIN1Q9UKV3 1341 aaKnown RBP22.99■■□□□ 1.27
SHMT2-204ENST00000553324 MED14O60244 1454 aa22.98■■□□□ 1.27
SHMT2-204ENST00000553324 HDGFP51858 240 aaKnown RBP22.98■■□□□ 1.27
SHMT2-204ENST00000553324 TMEM2Q9UHN6 1383 aa22.97■■□□□ 1.27
SHMT2-204ENST00000553324 NPHP4O75161 1426 aaPredicted RBP22.97■■□□□ 1.27
SHMT2-204ENST00000553324 LTKP29376 864 aa22.96■■□□□ 1.27
SHMT2-204ENST00000553324 SLIT1O75093 1534 aa22.95■■□□□ 1.26
SHMT2-204ENST00000553324 GCC2Q8IWJ2 1684 aa22.95■■□□□ 1.26
SHMT2-204ENST00000553324 ZNF335Q9H4Z2 1342 aaPredicted RBP22.95■■□□□ 1.26
SHMT2-204ENST00000553324 UBR1Q8IWV7 1749 aa22.94■■□□□ 1.26
SHMT2-204ENST00000553324 SYNMO15061 1565 aa22.94■■□□□ 1.26
SHMT2-204ENST00000553324 ARHGAP23Q9P227 1491 aa22.94■■□□□ 1.26
SHMT2-204ENST00000553324 SCAF11Q99590 1463 aaKnown RBP22.93■■□□□ 1.26
SHMT2-204ENST00000553324 PIK3C2BO00750 1634 aa22.92■■□□□ 1.26
SHMT2-204ENST00000553324 NEURL4Q96JN8 1562 aa22.92■■□□□ 1.26
SHMT2-204ENST00000553324 KDM5AP29375 1690 aaKnown RBP22.91■■□□□ 1.26
SHMT2-204ENST00000553324 SLC4A1APQ9BWU0 796 aaKnown RBP22.91■■□□□ 1.26
SHMT2-204ENST00000553324 POLR1AO95602 1720 aaPredicted RBP22.91■■□□□ 1.26
SHMT2-204ENST00000553324 CHGAP10645 457 aaKnown RBP22.9■■□□□ 1.26
SHMT2-204ENST00000553324 LTBP4Q8N2S1 1624 aa22.9■■□□□ 1.26
SHMT2-204ENST00000553324 E9PCH4 1651 aa22.88■■□□□ 1.25
SHMT2-204ENST00000553324 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.88■■□□□ 1.25
SHMT2-204ENST00000553324 ADGRB3O60242 1522 aa22.87■■□□□ 1.25
SHMT2-204ENST00000553324 IQSEC2Q5JU85 1478 aa22.86■■□□□ 1.25
SHMT2-204ENST00000553324 PPP1R15AO75807 674 aaPredicted RBP22.84■■□□□ 1.25
SHMT2-204ENST00000553324 BCANQ96GW7 911 aa22.83■■□□□ 1.25
SHMT2-204ENST00000553324 IQGAP1P46940 1657 aa22.83■■□□□ 1.24
SHMT2-204ENST00000553324 SETD5Q9C0A6 1442 aa22.82■■□□□ 1.24
SHMT2-204ENST00000553324 CPS1P31327 1500 aa22.82■■□□□ 1.24
SHMT2-204ENST00000553324 MPHOSPH9Q99550 1183 aa22.8■■□□□ 1.24
SHMT2-204ENST00000553324 RIMS2Q9UQ26 1411 aa22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms