RNA–Protein interactions for RNA: ENST00000549678.1

PTCH1-219, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 578 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-219ENST00000549678 FAM50AQ14320 339 aaKnown RBP11.19□□□□□ -0.62
PTCH1-219ENST00000549678 CROCC2H7BZ55 1655 aa11.19□□□□□ -0.62
PTCH1-219ENST00000549678 PLA2R1Q13018 1463 aa11.19□□□□□ -0.62
PTCH1-219ENST00000549678 KIF3BO15066 747 aa11.18□□□□□ -0.62
PTCH1-219ENST00000549678 ZNF142P52746 1687 aaPredicted RBP11.17□□□□□ -0.62
PTCH1-219ENST00000549678 MAST1Q9Y2H9 1570 aa11.17□□□□□ -0.62
PTCH1-219ENST00000549678 PKD2Q13563 968 aa11.17□□□□□ -0.62
PTCH1-219ENST00000549678 KDM5DQ9BY66 1539 aa11.17□□□□□ -0.62
PTCH1-219ENST00000549678 DNMT1P26358 1616 aaKnown RBP11.17□□□□□ -0.62
PTCH1-219ENST00000549678 CAMSAP1Q5T5Y3 1602 aa11.17□□□□□ -0.62
PTCH1-219ENST00000549678 CEP170BQ9Y4F5 1589 aaPredicted RBP11.16□□□□□ -0.62
PTCH1-219ENST00000549678 PZPP20742 1482 aa11.16□□□□□ -0.62
PTCH1-219ENST00000549678 MYO3AQ8NEV4 1616 aa11.16□□□□□ -0.62
PTCH1-219ENST00000549678 WASHC2CQ9Y4E1 1318 aa11.15□□□□□ -0.62
PTCH1-219ENST00000549678 IQSEC2Q5JU85 1478 aa11.15□□□□□ -0.62
PTCH1-219ENST00000549678 A2ML1A8K2U0 1454 aa11.14□□□□□ -0.63
PTCH1-219ENST00000549678 TCOF1Q13428 1488 aaKnown RBP11.14□□□□□ -0.63
PTCH1-219ENST00000549678 DAPK1P53355 1430 aa11.14□□□□□ -0.63
PTCH1-219ENST00000549678 TNRQ92752 1358 aa11.14□□□□□ -0.63
PTCH1-219ENST00000549678 EIF2AK4Q9P2K8 1649 aaKnown RBP11.13□□□□□ -0.63
PTCH1-219ENST00000549678 SHANK2Q9UPX8 1470 aa11.12□□□□□ -0.63
PTCH1-219ENST00000549678 RNF17Q9BXT8 1623 aaKnown RBP11.12□□□□□ -0.63
PTCH1-219ENST00000549678 NLRP1Q9C000 1473 aa11.12□□□□□ -0.63
PTCH1-219ENST00000549678 ABCC5O15440 1437 aa11.11□□□□□ -0.63
PTCH1-219ENST00000549678 DUOX2Q9NRD8 1548 aa11.11□□□□□ -0.63
PTCH1-219ENST00000549678 LTBP4Q8N2S1 1624 aa11.11□□□□□ -0.63
PTCH1-219ENST00000549678 CHIC2Q9UKJ5 165 aa11.11□□□□□ -0.63
PTCH1-219ENST00000549678 ITGAEP38570 1179 aa11.1□□□□□ -0.63
PTCH1-219ENST00000549678 ANKRD30AQ9BXX3 1397 aa11.1□□□□□ -0.63
PTCH1-219ENST00000549678 ZC3H13Q5T200 1668 aaKnown RBP11.1□□□□□ -0.63
PTCH1-219ENST00000549678 NCKAP5LQ9HCH0 1330 aa11.09□□□□□ -0.63
PTCH1-219ENST00000549678 KIF15Q9NS87 1388 aa11.09□□□□□ -0.63
PTCH1-219ENST00000549678 THEMISQ8N1K5 641 aaPredicted RBP11.09□□□□□ -0.63
PTCH1-219ENST00000549678 RRP7BPQ9NSQ0 103 aa11.09□□□□□ -0.63
PTCH1-219ENST00000549678 ABCC3O15438 1527 aa11.09□□□□□ -0.63
PTCH1-219ENST00000549678 ERBINQ96RT1 1412 aa11.09□□□□□ -0.63
PTCH1-219ENST00000549678 FBXO31Q5XUX0 539 aaPredicted RBP11.08□□□□□ -0.64
PTCH1-219ENST00000549678 ANKLE2Q86XL3 938 aa11.07□□□□□ -0.64
PTCH1-219ENST00000549678 ARHGAP31Q2M1Z3 1444 aa11.06□□□□□ -0.64
PTCH1-219ENST00000549678 SPATA31D1Q6ZQQ2 1576 aa11.06□□□□□ -0.64
PTCH1-219ENST00000549678 CEP152O94986 1710 aa11.06□□□□□ -0.64
PTCH1-219ENST00000549678 UGGT1Q9NYU2 1555 aa11.05□□□□□ -0.64
PTCH1-219ENST00000549678 MROH1Q8NDA8 1641 aa11.05□□□□□ -0.64
PTCH1-219ENST00000549678 ERVK-7P63135 1459 aa11.05□□□□□ -0.64
PTCH1-219ENST00000549678 ZNF335Q9H4Z2 1342 aaPredicted RBP11.05□□□□□ -0.64
PTCH1-219ENST00000549678 PRDM15P57071 1507 aaPredicted RBP11.04□□□□□ -0.64
PTCH1-219ENST00000549678 KANK1Q14678 1352 aa11.04□□□□□ -0.64
PTCH1-219ENST00000549678 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.04□□□□□ -0.64
PTCH1-219ENST00000549678 MED14O60244 1454 aa11.04□□□□□ -0.64
PTCH1-219ENST00000549678 ADGRL2O95490 1459 aa11.04□□□□□ -0.64
PTCH1-219ENST00000549678 POLR1AO95602 1720 aaPredicted RBP11.04□□□□□ -0.64
PTCH1-219ENST00000549678 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.03□□□□□ -0.64
PTCH1-219ENST00000549678 DEPDC5O75140 1603 aa11.02□□□□□ -0.64
PTCH1-219ENST00000549678 CPS1P31327 1500 aa11.02□□□□□ -0.65
PTCH1-219ENST00000549678 NEURL4Q96JN8 1562 aa11.02□□□□□ -0.65
PTCH1-219ENST00000549678 CFAP65Q6ZU64 1925 aaKnown RBP11.01□□□□□ -0.65
PTCH1-219ENST00000549678 NPHP4O75161 1426 aaPredicted RBP11.01□□□□□ -0.65
PTCH1-219ENST00000549678 RRBP1Q9P2E9 1410 aaKnown RBP11.01□□□□□ -0.65
PTCH1-219ENST00000549678 LMTK2Q8IWU2 1503 aa11□□□□□ -0.65
PTCH1-219ENST00000549678 ANKRD50Q9ULJ7 1429 aa11□□□□□ -0.65
PTCH1-219ENST00000549678 UBAP1LF5GYI3 381 aa10.99□□□□□ -0.65
PTCH1-219ENST00000549678 ROCK1Q13464 1354 aa10.98□□□□□ -0.65
PTCH1-219ENST00000549678 SCAF11Q99590 1463 aaKnown RBP10.97□□□□□ -0.65
PTCH1-219ENST00000549678 SLIT1O75093 1534 aa10.97□□□□□ -0.65
PTCH1-219ENST00000549678 VWDEQ8N2E2 1590 aa10.97□□□□□ -0.65
PTCH1-219ENST00000549678 IQGAP1P46940 1657 aa10.96□□□□□ -0.65
PTCH1-219ENST00000549678 GCC2Q8IWJ2 1684 aa10.96□□□□□ -0.65
PTCH1-219ENST00000549678 ARHGAP23Q9P227 1491 aa10.96□□□□□ -0.65
PTCH1-219ENST00000549678 TOM1O60784 492 aa10.96□□□□□ -0.65
PTCH1-219ENST00000549678 UBR1Q8IWV7 1749 aa10.95□□□□□ -0.66
PTCH1-219ENST00000549678 EID1Q9Y6B2 187 aa10.95□□□□□ -0.66
PTCH1-219ENST00000549678 KDM5AP29375 1690 aaKnown RBP10.95□□□□□ -0.66
PTCH1-219ENST00000549678 UNC13BO14795 1591 aa10.94□□□□□ -0.66
PTCH1-219ENST00000549678 RPRD2Q5VT52 1461 aaKnown RBP10.94□□□□□ -0.66
PTCH1-219ENST00000549678 SLC52A1Q9NWF4 448 aa10.94□□□□□ -0.66
PTCH1-219ENST00000549678 STAG3Q9UJ98 1225 aa10.94□□□□□ -0.66
PTCH1-219ENST00000549678 EFCAB6Q5THR3 1501 aa10.94□□□□□ -0.66
PTCH1-219ENST00000549678 NOS1P29475 1434 aa10.93□□□□□ -0.66
PTCH1-219ENST00000549678 TMEM2Q9UHN6 1383 aa10.93□□□□□ -0.66
PTCH1-219ENST00000549678 TET3O43151 1660 aa10.93□□□□□ -0.66
PTCH1-219ENST00000549678 ILDR2Q71H61 639 aa10.93□□□□□ -0.66
PTCH1-219ENST00000549678 TXNDC2Q86VQ3 553 aa10.93□□□□□ -0.66
PTCH1-219ENST00000549678 DISP3Q9P2K9 1392 aa10.92□□□□□ -0.66
PTCH1-219ENST00000549678 SYNMO15061 1565 aa10.91□□□□□ -0.66
PTCH1-219ENST00000549678 LTKP29376 864 aa10.91□□□□□ -0.66
PTCH1-219ENST00000549678 IDI1Q13907 227 aa10.91□□□□□ -0.66
PTCH1-219ENST00000549678 IQGAP3Q86VI3 1631 aa10.91□□□□□ -0.66
PTCH1-219ENST00000549678 NUP155O75694 1391 aa10.9□□□□□ -0.66
PTCH1-219ENST00000549678 TRIM52Q96A61 297 aa10.9□□□□□ -0.66
PTCH1-219ENST00000549678 PIK3C2BO00750 1634 aa10.9□□□□□ -0.66
PTCH1-219ENST00000549678 HDGFP51858 240 aaKnown RBP10.89□□□□□ -0.67
PTCH1-219ENST00000549678 ADGRB3O60242 1522 aa10.89□□□□□ -0.67
PTCH1-219ENST00000549678 LRRC7Q96NW7 1537 aa10.89□□□□□ -0.67
PTCH1-219ENST00000549678 E9PCH4 1651 aa10.88□□□□□ -0.67
PTCH1-219ENST00000549678 HFM1A2PYH4 1435 aa10.87□□□□□ -0.67
PTCH1-219ENST00000549678 NAIPQ13075 1403 aa10.87□□□□□ -0.67
PTCH1-219ENST00000549678 SCAF1Q9H7N4 1312 aaKnown RBP10.86□□□□□ -0.67
PTCH1-219ENST00000549678 PIP4K2BP78356 416 aa10.86□□□□□ -0.67
PTCH1-219ENST00000549678 STRCP1A6NGW2 1772 aa10.85□□□□□ -0.67
PTCH1-219ENST00000549678 SPHKAPQ2M3C7 1700 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms