RNA–Protein interactions for RNA: ENST00000549354.6

LINC00661-204, long intergenic non-protein coding RNA 661, humanhuman

TSL 1 (best) BASIC

Gene LINC00661, Length 3,340 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00661-204ENST00000549354 RBM19Q9Y4C8 960 aaKnown RBP15.43■□□□□ 0.06
LINC00661-204ENST00000549354 L3MBTL2Q969R5 705 aa15.43■□□□□ 0.06
LINC00661-204ENST00000549354 CFAP74Q9C0B2 1584 aa15.41■□□□□ 0.06
LINC00661-204ENST00000549354 SALL2Q9Y467 1007 aaPredicted RBP15.4■□□□□ 0.06
LINC00661-204ENST00000549354 ADGRL1O94910 1474 aa15.4■□□□□ 0.06
LINC00661-204ENST00000549354 SPAG9O60271 1321 aaKnown RBP15.39■□□□□ 0.05
LINC00661-204ENST00000549354 ATP7AQ04656 1500 aa15.39■□□□□ 0.05
LINC00661-204ENST00000549354 DEPDC5O75140 1603 aa15.38■□□□□ 0.05
LINC00661-204ENST00000549354 SCAPERQ9BY12 1400 aa15.37■□□□□ 0.05
LINC00661-204ENST00000549354 ATP10AO60312 1499 aa15.37■□□□□ 0.05
LINC00661-204ENST00000549354 RIMBP3CA6NJZ7 1639 aa15.37■□□□□ 0.05
LINC00661-204ENST00000549354 RIMBP3BA6NNM3 1639 aa15.37■□□□□ 0.05
LINC00661-204ENST00000549354 RIMBP3Q9UFD9 1639 aa15.37■□□□□ 0.05
LINC00661-204ENST00000549354 AFAP1Q8N556 730 aa15.37■□□□□ 0.05
LINC00661-204ENST00000549354 CD109Q6YHK3 1445 aa15.36■□□□□ 0.05
LINC00661-204ENST00000549354 EIF2AK4Q9P2K8 1649 aaKnown RBP15.35■□□□□ 0.05
LINC00661-204ENST00000549354 UHRF1BP1Q6BDS2 1440 aa15.35■□□□□ 0.05
LINC00661-204ENST00000549354 CCDC184Q52MB2 194 aa15.35■□□□□ 0.05
LINC00661-204ENST00000549354 GLI2P10070 1586 aa15.35■□□□□ 0.05
LINC00661-204ENST00000549354 KDM5CP41229 1560 aa15.35■□□□□ 0.05
LINC00661-204ENST00000549354 VWDEQ8N2E2 1590 aa15.34■□□□□ 0.05
LINC00661-204ENST00000549354 PLA2R1Q13018 1463 aa15.34■□□□□ 0.05
LINC00661-204ENST00000549354 ZNF518AQ6AHZ1 1483 aa15.34■□□□□ 0.05
LINC00661-204ENST00000549354 NEO1Q92859 1461 aa15.33■□□□□ 0.05
LINC00661-204ENST00000549354 NBPF8Q3BBV2 869 aa15.33■□□□□ 0.04
LINC00661-204ENST00000549354 KIDINS220Q9ULH0 1771 aa15.33■□□□□ 0.04
LINC00661-204ENST00000549354 MAP3K4Q9Y6R4 1608 aa15.32■□□□□ 0.04
LINC00661-204ENST00000549354 DHX29Q7Z478 1369 aaKnown RBP15.31■□□□□ 0.04
LINC00661-204ENST00000549354 POGZQ7Z3K3 1410 aa15.31■□□□□ 0.04
LINC00661-204ENST00000549354 MLH3Q9UHC1 1453 aa15.31■□□□□ 0.04
LINC00661-204ENST00000549354 SPATA31E1Q6ZUB1 1445 aa15.3■□□□□ 0.04
LINC00661-204ENST00000549354 BCL11AQ9H165 835 aa15.28■□□□□ 0.04
LINC00661-204ENST00000549354 PRDM15P57071 1507 aaPredicted RBP15.28■□□□□ 0.04
LINC00661-204ENST00000549354 MROH1Q8NDA8 1641 aa15.28■□□□□ 0.04
LINC00661-204ENST00000549354 B4GALNT3Q6L9W6 998 aa15.28■□□□□ 0.04
LINC00661-204ENST00000549354 ERICH6Q7L0X2 663 aa15.28■□□□□ 0.04
LINC00661-204ENST00000549354 BCORL1Q5H9F3 1711 aa15.28■□□□□ 0.04
LINC00661-204ENST00000549354 EIF4G2P78344 907 aaKnown RBP eCLIP15.27■□□□□ 0.04
LINC00661-204ENST00000549354 HSPA5P11021 654 aaKnown RBP15.27■□□□□ 0.03
LINC00661-204ENST00000549354 TET3O43151 1660 aa15.27■□□□□ 0.03
LINC00661-204ENST00000549354 E9PCH4 1651 aa15.26■□□□□ 0.03
LINC00661-204ENST00000549354 CCDC144AA2RUR9 1427 aa15.26■□□□□ 0.03
LINC00661-204ENST00000549354 PTPRTO14522 1441 aa15.26■□□□□ 0.03
LINC00661-204ENST00000549354 RALGAPBQ86X10 1494 aa15.26■□□□□ 0.03
LINC00661-204ENST00000549354 RNF17Q9BXT8 1623 aaKnown RBP15.25■□□□□ 0.03
LINC00661-204ENST00000549354 HECW2Q9P2P5 1572 aa15.25■□□□□ 0.03
LINC00661-204ENST00000549354 CCER2I3L3R5 266 aa15.25■□□□□ 0.03
LINC00661-204ENST00000549354 MSH5O43196 834 aa15.25■□□□□ 0.03
LINC00661-204ENST00000549354 KDM2AQ9Y2K7 1162 aa15.25■□□□□ 0.03
LINC00661-204ENST00000549354 MRS2Q9HD23 443 aa15.25■□□□□ 0.03
LINC00661-204ENST00000549354 CYB5RLQ6IPT4 315 aa15.24■□□□□ 0.03
LINC00661-204ENST00000549354 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.24■□□□□ 0.03
LINC00661-204ENST00000549354 LMTK2Q8IWU2 1503 aa15.24■□□□□ 0.03
LINC00661-204ENST00000549354 TRPM2O94759 1503 aa15.23■□□□□ 0.03
LINC00661-204ENST00000549354 A2MP01023 1474 aa15.23■□□□□ 0.03
LINC00661-204ENST00000549354 FRMPD1Q5SYB0 1578 aa15.23■□□□□ 0.03
LINC00661-204ENST00000549354 POLR1AO95602 1720 aaPredicted RBP15.23■□□□□ 0.03
LINC00661-204ENST00000549354 NEURL4Q96JN8 1562 aa15.22■□□□□ 0.03
LINC00661-204ENST00000549354 DIP2BQ9P265 1576 aa15.22■□□□□ 0.03
LINC00661-204ENST00000549354 RICTORQ6R327 1708 aa15.21■□□□□ 0.03
LINC00661-204ENST00000549354 KANK1Q14678 1352 aa15.2■□□□□ 0.02
LINC00661-204ENST00000549354 SPHKAPQ2M3C7 1700 aa15.2■□□□□ 0.02
LINC00661-204ENST00000549354 ABCA6Q8N139 1617 aa15.2■□□□□ 0.02
LINC00661-204ENST00000549354 WASHC2AQ641Q2 1341 aa15.19■□□□□ 0.02
LINC00661-204ENST00000549354 C11orf95C9JLR9 678 aaPredicted RBP15.19■□□□□ 0.02
LINC00661-204ENST00000549354 PRAG1Q86YV5 1406 aa15.19■□□□□ 0.02
LINC00661-204ENST00000549354 TRPM1Q7Z4N2 1603 aa15.18■□□□□ 0.02
LINC00661-204ENST00000549354 EFCAB6Q5THR3 1501 aa15.17■□□□□ 0.02
LINC00661-204ENST00000549354 CEP152O94986 1710 aa15.17■□□□□ 0.02
LINC00661-204ENST00000549354 LAMC1P11047 1609 aa15.17■□□□□ 0.02
LINC00661-204ENST00000549354 KIF3BO15066 747 aa15.17■□□□□ 0.02
LINC00661-204ENST00000549354 CCDC7Q96M83 1385 aa15.16■□□□□ 0.02
LINC00661-204ENST00000549354 NBR1Q14596 966 aa15.16■□□□□ 0.02
LINC00661-204ENST00000549354 DIP2CQ9Y2E4 1556 aa15.16■□□□□ 0.02
LINC00661-204ENST00000549354 PPRC1Q5VV67 1664 aaKnown RBP15.16■□□□□ 0.02
LINC00661-204ENST00000549354 ZMYM4Q5VZL5 1548 aa15.15■□□□□ 0.02
LINC00661-204ENST00000549354 GPRASP1Q5JY77 1395 aa15.15■□□□□ 0.02
LINC00661-204ENST00000549354 DCAF11Q8TEB1 546 aa15.15■□□□□ 0.02
LINC00661-204ENST00000549354 CLTCL1P53675 1640 aa15.15■□□□□ 0.02
LINC00661-204ENST00000549354 USP47Q96K76 1375 aa15.14■□□□□ 0.01
LINC00661-204ENST00000549354 ARID4BQ4LE39 1312 aaPredicted RBP15.14■□□□□ 0.01
LINC00661-204ENST00000549354 STAC3Q96MF2 364 aa15.14■□□□□ 0.01
LINC00661-204ENST00000549354 CNTLNQ9NXG0 1405 aa15.11■□□□□ 0.01
LINC00661-204ENST00000549354 SENP3Q9H4L4 574 aaPredicted RBP15.11■□□□□ 0.01
LINC00661-204ENST00000549354 MYT1LQ9UL68 1186 aa15.11■□□□□ 0.01
LINC00661-204ENST00000549354 RAPGEF3O95398 923 aa15.1■□□□□ 0.01
LINC00661-204ENST00000549354 NPM2Q86SE8 214 aaKnown RBP15.1■□□□□ 0.01
LINC00661-204ENST00000549354 KIF7Q2M1P5 1343 aa15.1■□□□□ 0.01
LINC00661-204ENST00000549354 FAM69CQ0P6D2 419 aa15.09■□□□□ 0.01
LINC00661-204ENST00000549354 RGL3Q3MIN7 710 aa15.09■□□□□ 0.01
LINC00661-204ENST00000549354 ABCC3O15438 1527 aa15.09■□□□□ 0.01
LINC00661-204ENST00000549354 MADDQ8WXG6 1647 aa15.08■□□□□ 0.01
LINC00661-204ENST00000549354 REREQ9P2R6 1566 aa15.08■□□□□ 0
LINC00661-204ENST00000549354 CARD11Q9BXL7 1154 aa15.08■□□□□ 0
LINC00661-204ENST00000549354 ZC3H13Q5T200 1668 aaKnown RBP15.07■□□□□ 0
LINC00661-204ENST00000549354 ROCK2O75116 1388 aaKnown RBP15.07■□□□□ 0
LINC00661-204ENST00000549354 KIF13AQ9H1H9 1805 aa15.06■□□□□ 0
LINC00661-204ENST00000549354 NPATQ14207 1427 aa15.05■□□□□ 0
LINC00661-204ENST00000549354 ARHGAP31Q2M1Z3 1444 aa15.05■□□□□ 0
LINC00661-204ENST00000549354 YEATS2Q9ULM3 1422 aa15.05■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms