RNA–Protein interactions for RNA: ENST00000549139.5

CHMP1A-206, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 812 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-206ENST00000549139 MTUS2Q5JR59 1369 aa24.93■■□□□ 1.58
CHMP1A-206ENST00000549139 POLR1AO95602 1720 aaPredicted RBP24.93■■□□□ 1.58
CHMP1A-206ENST00000549139 CPS1P31327 1500 aa24.92■■□□□ 1.58
CHMP1A-206ENST00000549139 FBXO31Q5XUX0 539 aaPredicted RBP24.91■■□□□ 1.58
CHMP1A-206ENST00000549139 SHANK2Q9UPX8 1470 aa24.9■■□□□ 1.58
CHMP1A-206ENST00000549139 MED1Q15648 1581 aaPredicted RBP24.9■■□□□ 1.58
CHMP1A-206ENST00000549139 VPS8Q8N3P4 1428 aa24.9■■□□□ 1.58
CHMP1A-206ENST00000549139 TNRQ92752 1358 aa24.9■■□□□ 1.58
CHMP1A-206ENST00000549139 PZPP20742 1482 aa24.89■■□□□ 1.57
CHMP1A-206ENST00000549139 TOM1O60784 492 aa24.87■■□□□ 1.57
CHMP1A-206ENST00000549139 FAM135AQ9P2D6 1515 aa24.86■■□□□ 1.57
CHMP1A-206ENST00000549139 PIP4K2BP78356 416 aa24.86■■□□□ 1.57
CHMP1A-206ENST00000549139 KDM5DQ9BY66 1539 aa24.86■■□□□ 1.57
CHMP1A-206ENST00000549139 VWDEQ8N2E2 1590 aa24.85■■□□□ 1.57
CHMP1A-206ENST00000549139 SCAF1Q9H7N4 1312 aaKnown RBP24.85■■□□□ 1.57
CHMP1A-206ENST00000549139 ALKQ9UM73 1620 aa24.84■■□□□ 1.57
CHMP1A-206ENST00000549139 KIF3BO15066 747 aa24.84■■□□□ 1.57
CHMP1A-206ENST00000549139 EHBP1L1Q8N3D4 1523 aa24.84■■□□□ 1.57
CHMP1A-206ENST00000549139 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.82■■□□□ 1.56
CHMP1A-206ENST00000549139 ANKLE2Q86XL3 938 aa24.82■■□□□ 1.56
CHMP1A-206ENST00000549139 MED14O60244 1454 aa24.82■■□□□ 1.56
CHMP1A-206ENST00000549139 MIA2Q96PC5 1412 aa24.81■■□□□ 1.56
CHMP1A-206ENST00000549139 CCDC141Q6ZP82 1450 aa24.81■■□□□ 1.56
CHMP1A-206ENST00000549139 NLRP1Q9C000 1473 aa24.79■■□□□ 1.56
CHMP1A-206ENST00000549139 THEMISQ8N1K5 641 aaPredicted RBP24.79■■□□□ 1.56
CHMP1A-206ENST00000549139 WASHC2CQ9Y4E1 1318 aa24.79■■□□□ 1.56
CHMP1A-206ENST00000549139 DEPDC5O75140 1603 aa24.79■■□□□ 1.56
CHMP1A-206ENST00000549139 NPHP4O75161 1426 aaPredicted RBP24.78■■□□□ 1.56
CHMP1A-206ENST00000549139 UGGT1Q9NYU2 1555 aa24.77■■□□□ 1.56
CHMP1A-206ENST00000549139 RSPH4AQ5TD94 716 aa24.75■■□□□ 1.55
CHMP1A-206ENST00000549139 CAMSAP2Q08AD1 1489 aa24.75■■□□□ 1.55
CHMP1A-206ENST00000549139 MAP3K1Q13233 1512 aa24.74■■□□□ 1.55
CHMP1A-206ENST00000549139 STRCP1A6NGW2 1772 aa24.72■■□□□ 1.55
CHMP1A-206ENST00000549139 NCOA2Q15596 1464 aa24.71■■□□□ 1.55
CHMP1A-206ENST00000549139 IQGAP1P46940 1657 aa24.7■■□□□ 1.54
CHMP1A-206ENST00000549139 ARHGEF5Q12774 1597 aa24.69■■□□□ 1.54
CHMP1A-206ENST00000549139 LRRC7Q96NW7 1537 aa24.68■■□□□ 1.54
CHMP1A-206ENST00000549139 RNF17Q9BXT8 1623 aaKnown RBP24.66■■□□□ 1.54
CHMP1A-206ENST00000549139 ABCC3O15438 1527 aa24.66■■□□□ 1.54
CHMP1A-206ENST00000549139 LRRC9Q6ZRR7 1453 aa24.65■■□□□ 1.54
CHMP1A-206ENST00000549139 APLP2Q06481 763 aa24.64■■□□□ 1.54
CHMP1A-206ENST00000549139 PHF23Q9BUL5 403 aaPredicted RBP24.64■■□□□ 1.54
CHMP1A-206ENST00000549139 TSPY4P0CV99 314 aa24.62■■□□□ 1.53
CHMP1A-206ENST00000549139 TSPY10P0CW01 314 aa24.62■■□□□ 1.53
CHMP1A-206ENST00000549139 ERVK-7P63135 1459 aa24.62■■□□□ 1.53
CHMP1A-206ENST00000549139 SYNMO15061 1565 aa24.62■■□□□ 1.53
CHMP1A-206ENST00000549139 ZC3H13Q5T200 1668 aaKnown RBP24.61■■□□□ 1.53
CHMP1A-206ENST00000549139 KANK4Q5T7N3 995 aaPredicted RBP24.6■■□□□ 1.53
CHMP1A-206ENST00000549139 MAST1Q9Y2H9 1570 aa24.59■■□□□ 1.53
CHMP1A-206ENST00000549139 MROH1Q8NDA8 1641 aa24.58■■□□□ 1.53
CHMP1A-206ENST00000549139 UBR1Q8IWV7 1749 aa24.56■■□□□ 1.52
CHMP1A-206ENST00000549139 EIF2AK4Q9P2K8 1649 aaKnown RBP24.56■■□□□ 1.52
CHMP1A-206ENST00000549139 CFAP65Q6ZU64 1925 aaKnown RBP24.55■■□□□ 1.52
CHMP1A-206ENST00000549139 SENP3Q9H4L4 574 aaPredicted RBP24.54■■□□□ 1.52
CHMP1A-206ENST00000549139 RGS17Q9UGC6 210 aaPredicted RBP24.54■■□□□ 1.52
CHMP1A-206ENST00000549139 SCAF11Q99590 1463 aaKnown RBP24.53■■□□□ 1.52
CHMP1A-206ENST00000549139 ARHGAP23Q9P227 1491 aa24.53■■□□□ 1.52
CHMP1A-206ENST00000549139 LTKP29376 864 aa24.52■■□□□ 1.52
CHMP1A-206ENST00000549139 CEP152O94986 1710 aa24.51■■□□□ 1.51
CHMP1A-206ENST00000549139 XIRP1Q702N8 1843 aaKnown RBP24.51■■□□□ 1.51
CHMP1A-206ENST00000549139 SLIT1O75093 1534 aa24.51■■□□□ 1.51
CHMP1A-206ENST00000549139 ARHGAP31Q2M1Z3 1444 aa24.46■■□□□ 1.51
CHMP1A-206ENST00000549139 TXNDC2Q86VQ3 553 aa24.45■■□□□ 1.5
CHMP1A-206ENST00000549139 DUOX2Q9NRD8 1548 aa24.44■■□□□ 1.5
CHMP1A-206ENST00000549139 FAM135BQ49AJ0 1406 aa24.42■■□□□ 1.5
CHMP1A-206ENST00000549139 PRDM15P57071 1507 aaPredicted RBP24.41■■□□□ 1.5
CHMP1A-206ENST00000549139 MYOM3Q5VTT5 1437 aa24.4■■□□□ 1.5
CHMP1A-206ENST00000549139 PIK3C2BO00750 1634 aa24.38■■□□□ 1.49
CHMP1A-206ENST00000549139 TMEM2Q9UHN6 1383 aa24.38■■□□□ 1.49
CHMP1A-206ENST00000549139 EID1Q9Y6B2 187 aa24.37■■□□□ 1.49
CHMP1A-206ENST00000549139 ERBINQ96RT1 1412 aa24.35■■□□□ 1.49
CHMP1A-206ENST00000549139 TMEM94Q12767 1356 aa24.34■■□□□ 1.49
CHMP1A-206ENST00000549139 KIF15Q9NS87 1388 aa24.34■■□□□ 1.49
CHMP1A-206ENST00000549139 POTEAQ6S8J7 498 aa24.34■■□□□ 1.49
CHMP1A-206ENST00000549139 KDM5AP29375 1690 aaKnown RBP24.32■■□□□ 1.48
CHMP1A-206ENST00000549139 TET3O43151 1660 aa24.31■■□□□ 1.48
CHMP1A-206ENST00000549139 ABCC5O15440 1437 aa24.31■■□□□ 1.48
CHMP1A-206ENST00000549139 KCNA6P17658 529 aa24.31■■□□□ 1.48
CHMP1A-206ENST00000549139 CROCC2H7BZ55 1655 aa24.29■■□□□ 1.48
CHMP1A-206ENST00000549139 ROBO1Q9Y6N7 1651 aa24.29■■□□□ 1.48
CHMP1A-206ENST00000549139 EFCAB6Q5THR3 1501 aa24.29■■□□□ 1.48
CHMP1A-206ENST00000549139 IDI1Q13907 227 aa24.28■■□□□ 1.48
CHMP1A-206ENST00000549139 RRP7BPQ9NSQ0 103 aa24.28■■□□□ 1.48
CHMP1A-206ENST00000549139 PTPN23Q9H3S7 1636 aa24.28■■□□□ 1.48
CHMP1A-206ENST00000549139 LMTK2Q8IWU2 1503 aa24.26■■□□□ 1.47
CHMP1A-206ENST00000549139 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.26■■□□□ 1.477e-11■■□□□ 13.6
CHMP1A-206ENST00000549139 FGD6Q6ZV73 1430 aa24.26■■□□□ 1.47
CHMP1A-206ENST00000549139 STAG3Q9UJ98 1225 aa24.25■■□□□ 1.47
CHMP1A-206ENST00000549139 PROSER2Q86WR7 435 aaPredicted RBP24.24■■□□□ 1.47
CHMP1A-206ENST00000549139 RBM33Q96EV2 1170 aaKnown RBP24.24■■□□□ 1.47
CHMP1A-206ENST00000549139 SLC26A8Q96RN1 970 aa24.24■■□□□ 1.47
CHMP1A-206ENST00000549139 NWD1Q149M9 1564 aa24.23■■□□□ 1.47
CHMP1A-206ENST00000549139 NKTRP30414 1462 aaKnown RBP24.22■■□□□ 1.47
CHMP1A-206ENST00000549139 NOS1P29475 1434 aa24.22■■□□□ 1.47
CHMP1A-206ENST00000549139 KANK1Q14678 1352 aa24.22■■□□□ 1.47
CHMP1A-206ENST00000549139 DAPK1P53355 1430 aa24.21■■□□□ 1.47
CHMP1A-206ENST00000549139 ADGRB3O60242 1522 aa24.18■■□□□ 1.46
CHMP1A-206ENST00000549139 PPARGC1BQ86YN6 1023 aaKnown RBP24.16■■□□□ 1.46
CHMP1A-206ENST00000549139 SLAIN2Q9P270 581 aa24.15■■□□□ 1.46
CHMP1A-206ENST00000549139 MSH6P52701 1360 aa24.15■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms