RNA–Protein interactions for RNA: ENST00000548420.1

PTCH1-217, Transcript of patched 1, humanhuman

TSL 5

Gene PTCH1, Length 553 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-217ENST00000548420 XIRP1Q702N8 1843 aaKnown RBP23.39■■□□□ 1.33
PTCH1-217ENST00000548420 ATP7AQ04656 1500 aa23.37■■□□□ 1.33
PTCH1-217ENST00000548420 FAM135BQ49AJ0 1406 aa23.36■■□□□ 1.33
PTCH1-217ENST00000548420 HNRNPMP52272 730 aaKnown RBP eCLIP23.35■■□□□ 1.33
PTCH1-217ENST00000548420 THEMISQ8N1K5 641 aaPredicted RBP23.35■■□□□ 1.33
PTCH1-217ENST00000548420 CDC42BPAQ5VT25 1732 aa23.35■■□□□ 1.33
PTCH1-217ENST00000548420 SYCP2Q9BX26 1530 aa23.34■■□□□ 1.33
PTCH1-217ENST00000548420 INO80Q9ULG1 1556 aaPredicted RBP23.33■■□□□ 1.33
PTCH1-217ENST00000548420 ZNF777Q9ULD5 760 aaPredicted RBP23.31■■□□□ 1.32
PTCH1-217ENST00000548420 UGGT1Q9NYU2 1555 aa23.31■■□□□ 1.32
PTCH1-217ENST00000548420 FMN1Q68DA7 1419 aa23.29■■□□□ 1.32
PTCH1-217ENST00000548420 ZC3H13Q5T200 1668 aaKnown RBP23.28■■□□□ 1.32
PTCH1-217ENST00000548420 TRIM52Q96A61 297 aa23.28■■□□□ 1.32
PTCH1-217ENST00000548420 PZPP20742 1482 aa23.28■■□□□ 1.32
PTCH1-217ENST00000548420 MIA2Q96PC5 1412 aa23.26■■□□□ 1.31
PTCH1-217ENST00000548420 FAM135AQ9P2D6 1515 aa23.26■■□□□ 1.31
PTCH1-217ENST00000548420 ROBO1Q9Y6N7 1651 aa23.24■■□□□ 1.31
PTCH1-217ENST00000548420 NLRP1Q9C000 1473 aa23.24■■□□□ 1.31
PTCH1-217ENST00000548420 CHIC1Q5VXU3 224 aa23.21■■□□□ 1.31
PTCH1-217ENST00000548420 ARHGAP35Q9NRY4 1499 aa23.21■■□□□ 1.31
PTCH1-217ENST00000548420 ADGBQ8N7X0 1667 aa23.2■■□□□ 1.3
PTCH1-217ENST00000548420 GPATCH8Q9UKJ3 1502 aaKnown RBP23.18■■□□□ 1.3
PTCH1-217ENST00000548420 KIAA1107Q9UPP5 1409 aa23.16■■□□□ 1.3
PTCH1-217ENST00000548420 LRP6O75581 1613 aa23.16■■□□□ 1.3
PTCH1-217ENST00000548420 EEA1Q15075 1411 aa23.14■■□□□ 1.29
PTCH1-217ENST00000548420 KDM5DQ9BY66 1539 aa23.13■■□□□ 1.29
PTCH1-217ENST00000548420 JCADQ9P266 1359 aa23.13■■□□□ 1.29
PTCH1-217ENST00000548420 LTKP29376 864 aa23.11■■□□□ 1.29
PTCH1-217ENST00000548420 TMEM94Q12767 1356 aa23.11■■□□□ 1.29
PTCH1-217ENST00000548420 DHX29Q7Z478 1369 aaKnown RBP23.11■■□□□ 1.29
PTCH1-217ENST00000548420 KIF3BO15066 747 aa23.1■■□□□ 1.29
PTCH1-217ENST00000548420 ZNF772Q68DY9 489 aaPredicted RBP23.1■■□□□ 1.29
PTCH1-217ENST00000548420 PHLPP1O60346 1717 aa23.1■■□□□ 1.29
PTCH1-217ENST00000548420 RBM33Q96EV2 1170 aaKnown RBP23.09■■□□□ 1.29
PTCH1-217ENST00000548420 WASHC2CQ9Y4E1 1318 aa23.08■■□□□ 1.29
PTCH1-217ENST00000548420 MAP3K1Q13233 1512 aa23.08■■□□□ 1.29
PTCH1-217ENST00000548420 SCAF11Q99590 1463 aaKnown RBP23.07■■□□□ 1.28
PTCH1-217ENST00000548420 RXRBP28702 533 aa23.07■■□□□ 1.28
PTCH1-217ENST00000548420 PLEKHH2Q8IVE3 1493 aa23.05■■□□□ 1.28
PTCH1-217ENST00000548420 CDK12Q9NYV4 1490 aaPredicted RBP23.04■■□□□ 1.28
PTCH1-217ENST00000548420 CFDP1Q9UEE9 299 aaPredicted RBP23.03■■□□□ 1.28
PTCH1-217ENST00000548420 COL16A1Q07092 1604 aaPredicted RBP23.03■■□□□ 1.28
PTCH1-217ENST00000548420 NCOA2Q15596 1464 aa23.03■■□□□ 1.28
PTCH1-217ENST00000548420 ZNF644Q9H582 1327 aaPredicted RBP23.03■■□□□ 1.28
PTCH1-217ENST00000548420 UBR1Q8IWV7 1749 aa23.02■■□□□ 1.28
PTCH1-217ENST00000548420 SETBP1Q9Y6X0 1596 aa23.01■■□□□ 1.27
PTCH1-217ENST00000548420 CCDC18Q5T9S5 1454 aa23■■□□□ 1.27
PTCH1-217ENST00000548420 ARHGAP23Q9P227 1491 aa23■■□□□ 1.27
PTCH1-217ENST00000548420 MBD5Q9P267 1494 aa23■■□□□ 1.27
PTCH1-217ENST00000548420 TXNDC2Q86VQ3 553 aa23■■□□□ 1.27
PTCH1-217ENST00000548420 EHMT2Q96KQ7 1210 aa23■■□□□ 1.27
PTCH1-217ENST00000548420 LRRC9Q6ZRR7 1453 aa22.99■■□□□ 1.27
PTCH1-217ENST00000548420 MEX3CQ5U5Q3 659 aaKnown RBP22.99■■□□□ 1.27
PTCH1-217ENST00000548420 RTEL1-TNFRSF6BF6WH68 1400 aa22.99■■□□□ 1.27
PTCH1-217ENST00000548420 SPATA31A6Q5VVP1 1343 aa22.98■■□□□ 1.27
PTCH1-217ENST00000548420 SLAIN2Q9P270 581 aa22.97■■□□□ 1.27
PTCH1-217ENST00000548420 CASKIN1Q8WXD9 1431 aa22.97■■□□□ 1.27
PTCH1-217ENST00000548420 SLIT1O75093 1534 aa22.96■■□□□ 1.27
PTCH1-217ENST00000548420 ERVK-7P63135 1459 aa22.95■■□□□ 1.26
PTCH1-217ENST00000548420 PROSER2Q86WR7 435 aaPredicted RBP22.95■■□□□ 1.26
PTCH1-217ENST00000548420 RGS12O14924 1447 aa22.94■■□□□ 1.26
PTCH1-217ENST00000548420 KCNA6P17658 529 aa22.94■■□□□ 1.26
PTCH1-217ENST00000548420 UBTFP17480 764 aaKnown RBP22.92■■□□□ 1.26
PTCH1-217ENST00000548420 CFAP65Q6ZU64 1925 aaKnown RBP22.92■■□□□ 1.26
PTCH1-217ENST00000548420 FGD6Q6ZV73 1430 aa22.91■■□□□ 1.26
PTCH1-217ENST00000548420 PRDM15P57071 1507 aaPredicted RBP22.9■■□□□ 1.26
PTCH1-217ENST00000548420 ZRANB1Q9UGI0 708 aa22.89■■□□□ 1.25
PTCH1-217ENST00000548420 CCNB3Q8WWL7 1395 aa22.89■■□□□ 1.25
PTCH1-217ENST00000548420 ABCC3O15438 1527 aa22.88■■□□□ 1.25
PTCH1-217ENST00000548420 TIAM1Q13009 1591 aa22.88■■□□□ 1.25
PTCH1-217ENST00000548420 SHPRHQ149N8 1683 aa22.87■■□□□ 1.25
PTCH1-217ENST00000548420 AFF2P51816 1311 aa22.86■■□□□ 1.25
PTCH1-217ENST00000548420 MSH6P52701 1360 aa22.85■■□□□ 1.25
PTCH1-217ENST00000548420 NUTM2BA6NNL0 878 aaPredicted RBP22.84■■□□□ 1.25
PTCH1-217ENST00000548420 NUTM2EB1AL46 878 aaPredicted RBP22.84■■□□□ 1.25
PTCH1-217ENST00000548420 NUTM2DQ5VT03 806 aaPredicted RBP22.84■■□□□ 1.25
PTCH1-217ENST00000548420 NUTM2AQ8IVF1 878 aaPredicted RBP22.84■■□□□ 1.25
PTCH1-217ENST00000548420 SLC26A8Q96RN1 970 aa22.84■■□□□ 1.25
PTCH1-217ENST00000548420 EID1Q9Y6B2 187 aa22.83■■□□□ 1.25
PTCH1-217ENST00000548420 TET3O43151 1660 aa22.83■■□□□ 1.24
PTCH1-217ENST00000548420 NWD1Q149M9 1564 aa22.8■■□□□ 1.24
PTCH1-217ENST00000548420 TMEM2Q9UHN6 1383 aa22.79■■□□□ 1.24
PTCH1-217ENST00000548420 NKTRP30414 1462 aaKnown RBP22.79■■□□□ 1.24
PTCH1-217ENST00000548420 AHDC1Q5TGY3 1603 aaPredicted RBP22.79■■□□□ 1.24
PTCH1-217ENST00000548420 RBM6P78332 1123 aaKnown RBP22.78■■□□□ 1.24
PTCH1-217ENST00000548420 DIP2AQ14689 1571 aa22.78■■□□□ 1.24
PTCH1-217ENST00000548420 QTRT2Q9H974 415 aaKnown RBP22.78■■□□□ 1.24
PTCH1-217ENST00000548420 KDM5AP29375 1690 aaKnown RBP22.76■■□□□ 1.23
PTCH1-217ENST00000548420 FYCO1Q9BQS8 1478 aa22.75■■□□□ 1.23
PTCH1-217ENST00000548420 PIK3C2BO00750 1634 aa22.75■■□□□ 1.23
PTCH1-217ENST00000548420 MROH1Q8NDA8 1641 aa22.75■■□□□ 1.23
PTCH1-217ENST00000548420 CEP152O94986 1710 aa22.74■■□□□ 1.23
PTCH1-217ENST00000548420 CAMSAP2Q08AD1 1489 aa22.73■■□□□ 1.23
PTCH1-217ENST00000548420 CCDC141Q6ZP82 1450 aa22.73■■□□□ 1.23
PTCH1-217ENST00000548420 ATAD2Q6PL18 1390 aa22.73■■□□□ 1.23
PTCH1-217ENST00000548420 EP400Q96L91 3159 aa22.7■■□□□ 1.22
PTCH1-217ENST00000548420 FOXD1Q16676 465 aa22.68■■□□□ 1.22
PTCH1-217ENST00000548420 MAST1Q9Y2H9 1570 aa22.67■■□□□ 1.22
PTCH1-217ENST00000548420 C8orf37Q96NL8 207 aa22.66■■□□□ 1.22
PTCH1-217ENST00000548420 CHD2O14647 1828 aaKnown RBP22.64■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms