RNA–Protein interactions for RNA: ENST00000545584.1

CHD4-213, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 4

Gene CHD4, Length 553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-213ENST00000545584 NCOA1Q15788 1441 aa31.03■■■□□ 2.56
CHD4-213ENST00000545584 MYO3AQ8NEV4 1616 aa31.02■■■□□ 2.56
CHD4-213ENST00000545584 CAMSAP1Q5T5Y3 1602 aa31.01■■■□□ 2.55
CHD4-213ENST00000545584 PTPN23Q9H3S7 1636 aa30.98■■■□□ 2.55
CHD4-213ENST00000545584 ZNF142P52746 1687 aaPredicted RBP30.98■■■□□ 2.55
CHD4-213ENST00000545584 CEP170BQ9Y4F5 1589 aaPredicted RBP30.98■■■□□ 2.55
CHD4-213ENST00000545584 PZPP20742 1482 aa30.95■■■□□ 2.55
CHD4-213ENST00000545584 FGD6Q6ZV73 1430 aa30.95■■■□□ 2.54
CHD4-213ENST00000545584 TNRQ92752 1358 aa30.93■■■□□ 2.54
CHD4-213ENST00000545584 FBXO31Q5XUX0 539 aaPredicted RBP30.93■■■□□ 2.54
CHD4-213ENST00000545584 EIF2AK4Q9P2K8 1649 aaKnown RBP30.93■■■□□ 2.54
CHD4-213ENST00000545584 ABCC5O15440 1437 aa30.92■■■□□ 2.54
CHD4-213ENST00000545584 RNF17Q9BXT8 1623 aaKnown RBP30.92■■■□□ 2.54
CHD4-213ENST00000545584 SHANK2Q9UPX8 1470 aa30.92■■■□□ 2.54
CHD4-213ENST00000545584 DUOX2Q9NRD8 1548 aa30.92■■■□□ 2.54
CHD4-213ENST00000545584 A2ML1A8K2U0 1454 aa30.91■■■□□ 2.54
CHD4-213ENST00000545584 PLA2R1Q13018 1463 aa30.91■■■□□ 2.54
CHD4-213ENST00000545584 PKD2Q13563 968 aa30.91■■■□□ 2.54
CHD4-213ENST00000545584 NCKAP5LQ9HCH0 1330 aa30.91■■■□□ 2.54
CHD4-213ENST00000545584 TCOF1Q13428 1488 aaKnown RBP30.89■■■□□ 2.54
CHD4-213ENST00000545584 KIF15Q9NS87 1388 aa30.89■■■□□ 2.54
CHD4-213ENST00000545584 CROCC2H7BZ55 1655 aa30.88■■■□□ 2.53
CHD4-213ENST00000545584 DAPK1P53355 1430 aa30.88■■■□□ 2.53
CHD4-213ENST00000545584 RRP7BPQ9NSQ0 103 aa30.86■■■□□ 2.53
CHD4-213ENST00000545584 DNMT1P26358 1616 aaKnown RBP30.86■■■□□ 2.53
CHD4-213ENST00000545584 ZC3H13Q5T200 1668 aaKnown RBP30.85■■■□□ 2.53
CHD4-213ENST00000545584 ABCC3O15438 1527 aa30.84■■■□□ 2.53
CHD4-213ENST00000545584 ERBINQ96RT1 1412 aa30.81■■■□□ 2.52
CHD4-213ENST00000545584 NLRP1Q9C000 1473 aa30.8■■■□□ 2.52
CHD4-213ENST00000545584 ANKRD30AQ9BXX3 1397 aa30.79■■■□□ 2.52
CHD4-213ENST00000545584 CHIC2Q9UKJ5 165 aa30.79■■■□□ 2.52
CHD4-213ENST00000545584 MROH1Q8NDA8 1641 aa30.79■■■□□ 2.52
CHD4-213ENST00000545584 FAM50AQ14320 339 aaKnown RBP30.77■■■□□ 2.52
CHD4-213ENST00000545584 THEMISQ8N1K5 641 aaPredicted RBP30.76■■■□□ 2.51
CHD4-213ENST00000545584 LTBP4Q8N2S1 1624 aa30.76■■■□□ 2.51
CHD4-213ENST00000545584 CEP152O94986 1710 aa30.73■■■□□ 2.51
CHD4-213ENST00000545584 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.73■■■□□ 2.514e-12■■□□□ 12.2
CHD4-213ENST00000545584 SPATA31D1Q6ZQQ2 1576 aa30.72■■■□□ 2.51
CHD4-213ENST00000545584 PRDM15P57071 1507 aaPredicted RBP30.72■■■□□ 2.51
CHD4-213ENST00000545584 UGGT1Q9NYU2 1555 aa30.71■■■□□ 2.51
CHD4-213ENST00000545584 ERVK-7P63135 1459 aa30.71■■■□□ 2.51
CHD4-213ENST00000545584 KANK1Q14678 1352 aa30.71■■■□□ 2.51
CHD4-213ENST00000545584 ANKLE2Q86XL3 938 aa30.7■■■□□ 2.51
CHD4-213ENST00000545584 ZNF335Q9H4Z2 1342 aaPredicted RBP30.7■■■□□ 2.5
CHD4-213ENST00000545584 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP30.68■■■□□ 2.5
CHD4-213ENST00000545584 IQSEC2Q5JU85 1478 aa30.68■■■□□ 2.5
CHD4-213ENST00000545584 POLR1AO95602 1720 aaPredicted RBP30.67■■■□□ 2.5
CHD4-213ENST00000545584 DEPDC5O75140 1603 aa30.65■■■□□ 2.5
CHD4-213ENST00000545584 CFAP65Q6ZU64 1925 aaKnown RBP30.65■■■□□ 2.5
CHD4-213ENST00000545584 ARHGAP31Q2M1Z3 1444 aa30.64■■■□□ 2.5
CHD4-213ENST00000545584 ADGRL2O95490 1459 aa30.64■■■□□ 2.5
CHD4-213ENST00000545584 NEURL4Q96JN8 1562 aa30.61■■■□□ 2.49
CHD4-213ENST00000545584 NPHP4O75161 1426 aaPredicted RBP30.56■■■□□ 2.48
CHD4-213ENST00000545584 ANKRD50Q9ULJ7 1429 aa30.55■■■□□ 2.48
CHD4-213ENST00000545584 LMTK2Q8IWU2 1503 aa30.54■■■□□ 2.48
CHD4-213ENST00000545584 MED14O60244 1454 aa30.54■■■□□ 2.48
CHD4-213ENST00000545584 VWDEQ8N2E2 1590 aa30.52■■■□□ 2.48
CHD4-213ENST00000545584 UBR1Q8IWV7 1749 aa30.5■■■□□ 2.47
CHD4-213ENST00000545584 PPARGC1BQ86YN6 1023 aaKnown RBP30.49■■■□□ 2.47
CHD4-213ENST00000545584 STAG3Q9UJ98 1225 aa30.49■■■□□ 2.47
CHD4-213ENST00000545584 UBAP1LF5GYI3 381 aa30.48■■■□□ 2.47
CHD4-213ENST00000545584 CPS1P31327 1500 aa30.47■■■□□ 2.47
CHD4-213ENST00000545584 IQGAP1P46940 1657 aa30.47■■■□□ 2.47
CHD4-213ENST00000545584 EFCAB6Q5THR3 1501 aa30.44■■■□□ 2.46
CHD4-213ENST00000545584 SCAF11Q99590 1463 aaKnown RBP30.44■■■□□ 2.46
CHD4-213ENST00000545584 ROCK1Q13464 1354 aa30.43■■■□□ 2.46
CHD4-213ENST00000545584 TXNDC2Q86VQ3 553 aa30.43■■■□□ 2.46
CHD4-213ENST00000545584 EID1Q9Y6B2 187 aa30.43■■■□□ 2.46
CHD4-213ENST00000545584 PIK3C2BO00750 1634 aa30.41■■■□□ 2.46
CHD4-213ENST00000545584 ITGAEP38570 1179 aa30.41■■■□□ 2.46
CHD4-213ENST00000545584 SLIT1O75093 1534 aa30.41■■■□□ 2.46
CHD4-213ENST00000545584 ARHGAP23Q9P227 1491 aa30.4■■■□□ 2.46
CHD4-213ENST00000545584 IDI1Q13907 227 aa30.4■■■□□ 2.46
CHD4-213ENST00000545584 NOS1P29475 1434 aa30.39■■■□□ 2.45
CHD4-213ENST00000545584 LTKP29376 864 aa30.38■■■□□ 2.45
CHD4-213ENST00000545584 RPRD2Q5VT52 1461 aaKnown RBP30.38■■■□□ 2.45
CHD4-213ENST00000545584 SLC52A1Q9NWF4 448 aa30.36■■■□□ 2.45
CHD4-213ENST00000545584 TMEM2Q9UHN6 1383 aa30.36■■■□□ 2.45
CHD4-213ENST00000545584 SYNMO15061 1565 aa30.35■■■□□ 2.45
CHD4-213ENST00000545584 KDM5AP29375 1690 aaKnown RBP30.35■■■□□ 2.45
CHD4-213ENST00000545584 TET3O43151 1660 aa30.33■■■□□ 2.45
CHD4-213ENST00000545584 UNC13BO14795 1591 aa30.33■■■□□ 2.45
CHD4-213ENST00000545584 TOM1O60784 492 aa30.33■■■□□ 2.45
CHD4-213ENST00000545584 GCC2Q8IWJ2 1684 aa30.28■■■□□ 2.44
CHD4-213ENST00000545584 ADGRB3O60242 1522 aa30.27■■■□□ 2.44
CHD4-213ENST00000545584 SCAF1Q9H7N4 1312 aaKnown RBP30.27■■■□□ 2.44
CHD4-213ENST00000545584 PIP4K2BP78356 416 aa30.24■■■□□ 2.43
CHD4-213ENST00000545584 NUP155O75694 1391 aa30.24■■■□□ 2.43
CHD4-213ENST00000545584 STRCP1A6NGW2 1772 aa30.22■■■□□ 2.43
CHD4-213ENST00000545584 IQGAP3Q86VI3 1631 aa30.22■■■□□ 2.43
CHD4-213ENST00000545584 LRRC7Q96NW7 1537 aa30.22■■■□□ 2.43
CHD4-213ENST00000545584 RRBP1Q9P2E9 1410 aaKnown RBP30.22■■■□□ 2.43
CHD4-213ENST00000545584 DISP3Q9P2K9 1392 aa30.19■■■□□ 2.42
CHD4-213ENST00000545584 HDGFP51858 240 aaKnown RBP30.19■■■□□ 2.42
CHD4-213ENST00000545584 E9PCH4 1651 aa30.18■■■□□ 2.42
CHD4-213ENST00000545584 BCANQ96GW7 911 aa30.18■■■□□ 2.42
CHD4-213ENST00000545584 CHGAP10645 457 aaKnown RBP30.16■■■□□ 2.42
CHD4-213ENST00000545584 SLC26A8Q96RN1 970 aa30.14■■■□□ 2.42
CHD4-213ENST00000545584 PPP1R15AO75807 674 aaPredicted RBP30.13■■■□□ 2.41
CHD4-213ENST00000545584 RIMS2Q9UQ26 1411 aa30.11■■■□□ 2.41
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms