RNA–Protein interactions for RNA: ENST00000545083.1

CHD4-212, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 3

Gene CHD4, Length 511 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-212ENST00000545083 TNRQ92752 1358 aa15.42■□□□□ 0.06
CHD4-212ENST00000545083 ADGBQ8N7X0 1667 aa15.41■□□□□ 0.06
CHD4-212ENST00000545083 VWDEQ8N2E2 1590 aa15.41■□□□□ 0.06
CHD4-212ENST00000545083 MBD5Q9P267 1494 aa15.41■□□□□ 0.06
CHD4-212ENST00000545083 POLR1AO95602 1720 aaPredicted RBP15.41■□□□□ 0.06
CHD4-212ENST00000545083 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.4■□□□□ 0.06
CHD4-212ENST00000545083 DHX29Q7Z478 1369 aaKnown RBP15.39■□□□□ 0.05
CHD4-212ENST00000545083 CHIC1Q5VXU3 224 aa15.39■□□□□ 0.05
CHD4-212ENST00000545083 PHF23Q9BUL5 403 aaPredicted RBP15.39■□□□□ 0.05
CHD4-212ENST00000545083 PZPP20742 1482 aa15.39■□□□□ 0.05
CHD4-212ENST00000545083 ANKLE2Q86XL3 938 aa15.37■□□□□ 0.05
CHD4-212ENST00000545083 TIAM1Q13009 1591 aa15.36■□□□□ 0.05
CHD4-212ENST00000545083 RTEL1-TNFRSF6BF6WH68 1400 aa15.36■□□□□ 0.05
CHD4-212ENST00000545083 NPHP4O75161 1426 aaPredicted RBP15.36■□□□□ 0.05
CHD4-212ENST00000545083 KIF3BO15066 747 aa15.36■□□□□ 0.05
CHD4-212ENST00000545083 SENP3Q9H4L4 574 aaPredicted RBP15.36■□□□□ 0.05
CHD4-212ENST00000545083 MTUS2Q5JR59 1369 aa15.36■□□□□ 0.05
CHD4-212ENST00000545083 MED14O60244 1454 aa15.35■□□□□ 0.05
CHD4-212ENST00000545083 KDM5DQ9BY66 1539 aa15.35■□□□□ 0.05
CHD4-212ENST00000545083 MIA2Q96PC5 1412 aa15.34■□□□□ 0.05
CHD4-212ENST00000545083 THEMISQ8N1K5 641 aaPredicted RBP15.34■□□□□ 0.05
CHD4-212ENST00000545083 LRRC7Q96NW7 1537 aa15.33■□□□□ 0.04
CHD4-212ENST00000545083 UGGT1Q9NYU2 1555 aa15.32■□□□□ 0.04
CHD4-212ENST00000545083 DEPDC5O75140 1603 aa15.32■□□□□ 0.04
CHD4-212ENST00000545083 WASHC2CQ9Y4E1 1318 aa15.32■□□□□ 0.04
CHD4-212ENST00000545083 NLRP1Q9C000 1473 aa15.32■□□□□ 0.04
CHD4-212ENST00000545083 STRCP1A6NGW2 1772 aa15.31■□□□□ 0.04
CHD4-212ENST00000545083 RGS17Q9UGC6 210 aaPredicted RBP15.31■□□□□ 0.04
CHD4-212ENST00000545083 FAM135AQ9P2D6 1515 aa15.31■□□□□ 0.04
CHD4-212ENST00000545083 IQGAP1P46940 1657 aa15.28■□□□□ 0.04
CHD4-212ENST00000545083 CCDC141Q6ZP82 1450 aa15.28■□□□□ 0.04
CHD4-212ENST00000545083 EHBP1L1Q8N3D4 1523 aa15.27■□□□□ 0.04
CHD4-212ENST00000545083 CEP162Q5TB80 1403 aa15.26■□□□□ 0.03
CHD4-212ENST00000545083 RNF17Q9BXT8 1623 aaKnown RBP15.26■□□□□ 0.03
CHD4-212ENST00000545083 CAMSAP2Q08AD1 1489 aa15.26■□□□□ 0.03
CHD4-212ENST00000545083 SYNMO15061 1565 aa15.24■□□□□ 0.03
CHD4-212ENST00000545083 ABCC3O15438 1527 aa15.22■□□□□ 0.03
CHD4-212ENST00000545083 ZC3H13Q5T200 1668 aaKnown RBP15.22■□□□□ 0.03
CHD4-212ENST00000545083 ERVK-7P63135 1459 aa15.21■□□□□ 0.03
CHD4-212ENST00000545083 NCOA2Q15596 1464 aa15.2■□□□□ 0.02
CHD4-212ENST00000545083 RSPH4AQ5TD94 716 aa15.2■□□□□ 0.02
CHD4-212ENST00000545083 LTKP29376 864 aa15.19■□□□□ 0.02
CHD4-212ENST00000545083 POTEAQ6S8J7 498 aa15.19■□□□□ 0.02
CHD4-212ENST00000545083 SCAF11Q99590 1463 aaKnown RBP15.19■□□□□ 0.02
CHD4-212ENST00000545083 ARHGEF5Q12774 1597 aa15.18■□□□□ 0.02
CHD4-212ENST00000545083 XIRP1Q702N8 1843 aaKnown RBP15.17■□□□□ 0.02
CHD4-212ENST00000545083 UBR1Q8IWV7 1749 aa15.17■□□□□ 0.02
CHD4-212ENST00000545083 MROH1Q8NDA8 1641 aa15.17■□□□□ 0.02
CHD4-212ENST00000545083 ARHGAP23Q9P227 1491 aa15.16■□□□□ 0.02
CHD4-212ENST00000545083 TSPY4P0CV99 314 aa15.16■□□□□ 0.02
CHD4-212ENST00000545083 TSPY10P0CW01 314 aa15.16■□□□□ 0.02
CHD4-212ENST00000545083 TXNDC2Q86VQ3 553 aa15.15■□□□□ 0.02
CHD4-212ENST00000545083 FAM135BQ49AJ0 1406 aa15.15■□□□□ 0.02
CHD4-212ENST00000545083 SLIT1O75093 1534 aa15.14■□□□□ 0.01
CHD4-212ENST00000545083 CEP152O94986 1710 aa15.12■□□□□ 0.01
CHD4-212ENST00000545083 MAST1Q9Y2H9 1570 aa15.11■□□□□ 0.01
CHD4-212ENST00000545083 CFAP65Q6ZU64 1925 aaKnown RBP15.11■□□□□ 0.01
CHD4-212ENST00000545083 TMEM94Q12767 1356 aa15.11■□□□□ 0.01
CHD4-212ENST00000545083 EIF2AK4Q9P2K8 1649 aaKnown RBP15.1■□□□□ 0.01
CHD4-212ENST00000545083 RBM33Q96EV2 1170 aaKnown RBP15.09■□□□□ 0.01
CHD4-212ENST00000545083 MAP3K1Q13233 1512 aa15.08■□□□□ 0.01
CHD4-212ENST00000545083 TMEM2Q9UHN6 1383 aa15.08■□□□□ 0
CHD4-212ENST00000545083 EID1Q9Y6B2 187 aa15.07■□□□□ 0
CHD4-212ENST00000545083 ARHGAP31Q2M1Z3 1444 aa15.07■□□□□ 0
CHD4-212ENST00000545083 ROBO1Q9Y6N7 1651 aa15.06■□□□□ 0
CHD4-212ENST00000545083 SETD1AO15047 1707 aaKnown RBP15.06■□□□□ 0
CHD4-212ENST00000545083 PIK3C2BO00750 1634 aa15.06■□□□□ 0
CHD4-212ENST00000545083 KCNA6P17658 529 aa15.05■□□□□ -0
CHD4-212ENST00000545083 PRDM15P57071 1507 aaPredicted RBP15.04■□□□□ -0
CHD4-212ENST00000545083 DUOX2Q9NRD8 1548 aa15.04■□□□□ -0
CHD4-212ENST00000545083 LRRC9Q6ZRR7 1453 aa15.03■□□□□ -0
CHD4-212ENST00000545083 PROSER2Q86WR7 435 aaPredicted RBP15.03■□□□□ -0
CHD4-212ENST00000545083 SLC26A8Q96RN1 970 aa15.03■□□□□ -0
CHD4-212ENST00000545083 TET3O43151 1660 aa15.03■□□□□ -0
CHD4-212ENST00000545083 KIF15Q9NS87 1388 aa15.01□□□□□ -0.01
CHD4-212ENST00000545083 IDI1Q13907 227 aa15.01□□□□□ -0.01
CHD4-212ENST00000545083 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15□□□□□ -0.019e-8■□□□□ 8.3
CHD4-212ENST00000545083 STAG3Q9UJ98 1225 aa15□□□□□ -0.01
CHD4-212ENST00000545083 EFCAB6Q5THR3 1501 aa15□□□□□ -0.01
CHD4-212ENST00000545083 KANK4Q5T7N3 995 aaPredicted RBP14.99□□□□□ -0.01
CHD4-212ENST00000545083 MYOM3Q5VTT5 1437 aa14.99□□□□□ -0.01
CHD4-212ENST00000545083 JCADQ9P266 1359 aa14.98□□□□□ -0.01
CHD4-212ENST00000545083 NWD1Q149M9 1564 aa14.98□□□□□ -0.01
CHD4-212ENST00000545083 NKTRP30414 1462 aaKnown RBP14.98□□□□□ -0.01
CHD4-212ENST00000545083 RRP7BPQ9NSQ0 103 aa14.98□□□□□ -0.01
CHD4-212ENST00000545083 ERBINQ96RT1 1412 aa14.98□□□□□ -0.01
CHD4-212ENST00000545083 SLAIN2Q9P270 581 aa14.97□□□□□ -0.01
CHD4-212ENST00000545083 PHLPP1O60346 1717 aa14.97□□□□□ -0.01
CHD4-212ENST00000545083 LRP6O75581 1613 aa14.96□□□□□ -0.01
CHD4-212ENST00000545083 ABCC5O15440 1437 aa14.96□□□□□ -0.01
CHD4-212ENST00000545083 UPF1Q92900 1129 aaKnown RBP eCLIP14.96□□□□□ -0.01
CHD4-212ENST00000545083 MSH6P52701 1360 aa14.96□□□□□ -0.02
CHD4-212ENST00000545083 KDM5AP29375 1690 aaKnown RBP14.95□□□□□ -0.02
CHD4-212ENST00000545083 LMTK2Q8IWU2 1503 aa14.94□□□□□ -0.02
CHD4-212ENST00000545083 COL16A1Q07092 1604 aaPredicted RBP14.94□□□□□ -0.02
CHD4-212ENST00000545083 NOS1P29475 1434 aa14.93□□□□□ -0.02
CHD4-212ENST00000545083 VPS8Q8N3P4 1428 aa14.93□□□□□ -0.02
CHD4-212ENST00000545083 ADGRB3O60242 1522 aa14.93□□□□□ -0.02
CHD4-212ENST00000545083 KANK1Q14678 1352 aa14.93□□□□□ -0.02
CHD4-212ENST00000545083 TRIM52Q96A61 297 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms