RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 FAM135AQ9P2D6 1515 aa20.87■□□□□ 0.93
USP28-212ENST00000544750 CEP162Q5TB80 1403 aa20.86■□□□□ 0.93
USP28-212ENST00000544750 CPS1P31327 1500 aa20.85■□□□□ 0.93
USP28-212ENST00000544750 PZPP20742 1482 aa20.85■□□□□ 0.93
USP28-212ENST00000544750 KDM5DQ9BY66 1539 aa20.83■□□□□ 0.93
USP28-212ENST00000544750 TNRQ92752 1358 aa20.83■□□□□ 0.92
USP28-212ENST00000544750 FBXO31Q5XUX0 539 aaPredicted RBP20.82■□□□□ 0.92
USP28-212ENST00000544750 SHANK2Q9UPX8 1470 aa20.81■□□□□ 0.92
USP28-212ENST00000544750 VWDEQ8N2E2 1590 aa20.81■□□□□ 0.92
USP28-212ENST00000544750 MED1Q15648 1581 aaPredicted RBP20.8■□□□□ 0.92
USP28-212ENST00000544750 CCDC141Q6ZP82 1450 aa20.8■□□□□ 0.92
USP28-212ENST00000544750 DEPDC5O75140 1603 aa20.79■□□□□ 0.92
USP28-212ENST00000544750 ALKQ9UM73 1620 aa20.79■□□□□ 0.92
USP28-212ENST00000544750 KIF3BO15066 747 aa20.78■□□□□ 0.92
USP28-212ENST00000544750 HSPA1LP34931 641 aa20.78■□□□□ 0.92
USP28-212ENST00000544750 MED14O60244 1454 aa20.77■□□□□ 0.92
USP28-212ENST00000544750 CAMSAP2Q08AD1 1489 aa20.77■□□□□ 0.92
USP28-212ENST00000544750 NLRP1Q9C000 1473 aa20.76■□□□□ 0.91
USP28-212ENST00000544750 STRCP1A6NGW2 1772 aa20.76■□□□□ 0.91
USP28-212ENST00000544750 MIA2Q96PC5 1412 aa20.76■□□□□ 0.91
USP28-212ENST00000544750 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.75■□□□□ 0.91
USP28-212ENST00000544750 ARHGEF5Q12774 1597 aa20.75■□□□□ 0.91
USP28-212ENST00000544750 UGGT1Q9NYU2 1555 aa20.75■□□□□ 0.91
USP28-212ENST00000544750 NCOA2Q15596 1464 aa20.75■□□□□ 0.91
USP28-212ENST00000544750 TOM1O60784 492 aa20.74■□□□□ 0.91
USP28-212ENST00000544750 RSPH4AQ5TD94 716 aa20.73■□□□□ 0.91
USP28-212ENST00000544750 ANKLE2Q86XL3 938 aa20.73■□□□□ 0.91
USP28-212ENST00000544750 RNF17Q9BXT8 1623 aaKnown RBP20.73■□□□□ 0.91
USP28-212ENST00000544750 IQGAP1P46940 1657 aa20.73■□□□□ 0.91
USP28-212ENST00000544750 WASHC2CQ9Y4E1 1318 aa20.73■□□□□ 0.91
USP28-212ENST00000544750 PIP4K2BP78356 416 aa20.72■□□□□ 0.91
USP28-212ENST00000544750 NPHP4O75161 1426 aaPredicted RBP20.71■□□□□ 0.91
USP28-212ENST00000544750 THEMISQ8N1K5 641 aaPredicted RBP20.71■□□□□ 0.91
USP28-212ENST00000544750 SCAF1Q9H7N4 1312 aaKnown RBP20.7■□□□□ 0.9
USP28-212ENST00000544750 ZC3H13Q5T200 1668 aaKnown RBP20.7■□□□□ 0.9
USP28-212ENST00000544750 MAST1Q9Y2H9 1570 aa20.68■□□□□ 0.9
USP28-212ENST00000544750 CFAP65Q6ZU64 1925 aaKnown RBP20.67■□□□□ 0.9
USP28-212ENST00000544750 ABCC3O15438 1527 aa20.67■□□□□ 0.9
USP28-212ENST00000544750 MROH1Q8NDA8 1641 aa20.66■□□□□ 0.9
USP28-212ENST00000544750 EIF2AK4Q9P2K8 1649 aaKnown RBP20.66■□□□□ 0.9
USP28-212ENST00000544750 SYNMO15061 1565 aa20.65■□□□□ 0.9
USP28-212ENST00000544750 UBR1Q8IWV7 1749 aa20.64■□□□□ 0.9
USP28-212ENST00000544750 LRRC7Q96NW7 1537 aa20.64■□□□□ 0.9
USP28-212ENST00000544750 CEP152O94986 1710 aa20.63■□□□□ 0.89
USP28-212ENST00000544750 ERVK-7P63135 1459 aa20.62■□□□□ 0.89
USP28-212ENST00000544750 TSPY4P0CV99 314 aa20.61■□□□□ 0.89
USP28-212ENST00000544750 TSPY10P0CW01 314 aa20.61■□□□□ 0.89
USP28-212ENST00000544750 XIRP1Q702N8 1843 aaKnown RBP20.61■□□□□ 0.89
USP28-212ENST00000544750 LRRC9Q6ZRR7 1453 aa20.56■□□□□ 0.88
USP28-212ENST00000544750 ARHGAP23Q9P227 1491 aa20.56■□□□□ 0.88
USP28-212ENST00000544750 SLIT1O75093 1534 aa20.54■□□□□ 0.88
USP28-212ENST00000544750 SCAF11Q99590 1463 aaKnown RBP20.53■□□□□ 0.88
USP28-212ENST00000544750 PHF23Q9BUL5 403 aaPredicted RBP20.51■□□□□ 0.87
USP28-212ENST00000544750 DUOX2Q9NRD8 1548 aa20.51■□□□□ 0.87
USP28-212ENST00000544750 PRDM15P57071 1507 aaPredicted RBP20.5■□□□□ 0.87
USP28-212ENST00000544750 LTKP29376 864 aa20.5■□□□□ 0.87
USP28-212ENST00000544750 ARHGAP31Q2M1Z3 1444 aa20.5■□□□□ 0.87
USP28-212ENST00000544750 VPS8Q8N3P4 1428 aa20.48■□□□□ 0.87
USP28-212ENST00000544750 CROCC2H7BZ55 1655 aa20.48■□□□□ 0.87
USP28-212ENST00000544750 MAP3K1Q13233 1512 aa20.48■□□□□ 0.87
USP28-212ENST00000544750 MYOM3Q5VTT5 1437 aa20.47■□□□□ 0.87
USP28-212ENST00000544750 PIK3C2BO00750 1634 aa20.47■□□□□ 0.87
USP28-212ENST00000544750 KDM5AP29375 1690 aaKnown RBP20.46■□□□□ 0.87
USP28-212ENST00000544750 RGS17Q9UGC6 210 aaPredicted RBP20.46■□□□□ 0.87
USP28-212ENST00000544750 KANK4Q5T7N3 995 aaPredicted RBP20.45■□□□□ 0.86
USP28-212ENST00000544750 TXNDC2Q86VQ3 553 aa20.44■□□□□ 0.86
USP28-212ENST00000544750 SENP3Q9H4L4 574 aaPredicted RBP20.44■□□□□ 0.86
USP28-212ENST00000544750 ERBINQ96RT1 1412 aa20.42■□□□□ 0.86
USP28-212ENST00000544750 FAM135BQ49AJ0 1406 aa20.41■□□□□ 0.86
USP28-212ENST00000544750 KIF15Q9NS87 1388 aa20.4■□□□□ 0.86
USP28-212ENST00000544750 TMEM2Q9UHN6 1383 aa20.4■□□□□ 0.86
USP28-212ENST00000544750 ABCC5O15440 1437 aa20.39■□□□□ 0.85
USP28-212ENST00000544750 TET3O43151 1660 aa20.38■□□□□ 0.85
USP28-212ENST00000544750 EID1Q9Y6B2 187 aa20.37■□□□□ 0.85
USP28-212ENST00000544750 PTPN23Q9H3S7 1636 aa20.37■□□□□ 0.85
USP28-212ENST00000544750 LMTK2Q8IWU2 1503 aa20.37■□□□□ 0.85
USP28-212ENST00000544750 ROBO1Q9Y6N7 1651 aa20.36■□□□□ 0.85
USP28-212ENST00000544750 EFCAB6Q5THR3 1501 aa20.36■□□□□ 0.85
USP28-212ENST00000544750 NWD1Q149M9 1564 aa20.34■□□□□ 0.85
USP28-212ENST00000544750 TMEM94Q12767 1356 aa20.34■□□□□ 0.85
USP28-212ENST00000544750 RRP7BPQ9NSQ0 103 aa20.33■□□□□ 0.85
USP28-212ENST00000544750 IDI1Q13907 227 aa20.32■□□□□ 0.84
USP28-212ENST00000544750 DAPK1P53355 1430 aa20.32■□□□□ 0.84
USP28-212ENST00000544750 KCNA6P17658 529 aa20.31■□□□□ 0.84
USP28-212ENST00000544750 NOS1P29475 1434 aa20.3■□□□□ 0.84
USP28-212ENST00000544750 ADGRB3O60242 1522 aa20.29■□□□□ 0.84
USP28-212ENST00000544750 POTEAQ6S8J7 498 aa20.29■□□□□ 0.84
USP28-212ENST00000544750 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.29■□□□□ 0.84
USP28-212ENST00000544750 MYO5BQ9ULV0 1848 aa20.29■□□□□ 0.84
USP28-212ENST00000544750 CHD2O14647 1828 aaKnown RBP20.28■□□□□ 0.84
USP28-212ENST00000544750 LOC105371045A0A1W2PR82 267 aa20.28■□□□□ 0.84
USP28-212ENST00000544750 KANK1Q14678 1352 aa20.28■□□□□ 0.84
USP28-212ENST00000544750 NKTRP30414 1462 aaKnown RBP20.28■□□□□ 0.84
USP28-212ENST00000544750 STAG3Q9UJ98 1225 aa20.26■□□□□ 0.83
USP28-212ENST00000544750 PROSER2Q86WR7 435 aaPredicted RBP20.25■□□□□ 0.83
USP28-212ENST00000544750 SLC26A8Q96RN1 970 aa20.25■□□□□ 0.83
USP28-212ENST00000544750 FGD6Q6ZV73 1430 aa20.25■□□□□ 0.83
USP28-212ENST00000544750 PHLPP1O60346 1717 aa20.24■□□□□ 0.83
USP28-212ENST00000544750 RBM33Q96EV2 1170 aaKnown RBP20.23■□□□□ 0.83
USP28-212ENST00000544750 ANKRD30AQ9BXX3 1397 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms