RNA–Protein interactions for RNA: ENST00000544513.1

SEMA4D-224, Transcript of semaphorin 4D, humanhuman

TSL 5

Gene SEMA4D, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-224ENST00000544513 KIF3BO15066 747 aa22.11■■□□□ 1.13
SEMA4D-224ENST00000544513 A2ML1A8K2U0 1454 aa22.09■■□□□ 1.13
SEMA4D-224ENST00000544513 MAP3K1Q13233 1512 aa22.08■■□□□ 1.13
SEMA4D-224ENST00000544513 KDM5DQ9BY66 1539 aa22.06■■□□□ 1.12
SEMA4D-224ENST00000544513 PZPP20742 1482 aa22.06■■□□□ 1.12
SEMA4D-224ENST00000544513 TSPY4P0CV99 314 aa22.05■■□□□ 1.12
SEMA4D-224ENST00000544513 TSPY10P0CW01 314 aa22.05■■□□□ 1.12
SEMA4D-224ENST00000544513 FBXO31Q5XUX0 539 aaPredicted RBP22.05■■□□□ 1.12
SEMA4D-224ENST00000544513 DNMT1P26358 1616 aaKnown RBP22.05■■□□□ 1.12
SEMA4D-224ENST00000544513 KANK4Q5T7N3 995 aaPredicted RBP22.04■■□□□ 1.12
SEMA4D-224ENST00000544513 ZNF335Q9H4Z2 1342 aaPredicted RBP22.04■■□□□ 1.12
SEMA4D-224ENST00000544513 TNRQ92752 1358 aa22.03■■□□□ 1.12
SEMA4D-224ENST00000544513 WASHC2CQ9Y4E1 1318 aa22.03■■□□□ 1.12
SEMA4D-224ENST00000544513 MAST1Q9Y2H9 1570 aa22.02■■□□□ 1.12
SEMA4D-224ENST00000544513 MIA2Q96PC5 1412 aa22■■□□□ 1.11
SEMA4D-224ENST00000544513 MYOM3Q5VTT5 1437 aa21.99■■□□□ 1.11
SEMA4D-224ENST00000544513 RNF17Q9BXT8 1623 aaKnown RBP21.98■■□□□ 1.11
SEMA4D-224ENST00000544513 NLRP1Q9C000 1473 aa21.95■■□□□ 1.1
SEMA4D-224ENST00000544513 NEURL4Q96JN8 1562 aa21.95■■□□□ 1.1
SEMA4D-224ENST00000544513 ABCC3O15438 1527 aa21.94■■□□□ 1.1
SEMA4D-224ENST00000544513 EIF2AK4Q9P2K8 1649 aaKnown RBP21.93■■□□□ 1.1
SEMA4D-224ENST00000544513 POLR1AO95602 1720 aaPredicted RBP21.92■■□□□ 1.1
SEMA4D-224ENST00000544513 MROH1Q8NDA8 1641 aa21.91■■□□□ 1.1
SEMA4D-224ENST00000544513 THEMISQ8N1K5 641 aaPredicted RBP21.91■■□□□ 1.1
SEMA4D-224ENST00000544513 ZC3H13Q5T200 1668 aaKnown RBP21.9■■□□□ 1.1
SEMA4D-224ENST00000544513 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.89■■□□□ 1.1
SEMA4D-224ENST00000544513 DISP3Q9P2K9 1392 aa21.89■■□□□ 1.1
SEMA4D-224ENST00000544513 UBAP1LF5GYI3 381 aa21.89■■□□□ 1.09
SEMA4D-224ENST00000544513 ANKLE2Q86XL3 938 aa21.89■■□□□ 1.09
SEMA4D-224ENST00000544513 SPATA31D1Q6ZQQ2 1576 aa21.89■■□□□ 1.09
SEMA4D-224ENST00000544513 UGGT1Q9NYU2 1555 aa21.88■■□□□ 1.09
SEMA4D-224ENST00000544513 DUOX2Q9NRD8 1548 aa21.88■■□□□ 1.09
SEMA4D-224ENST00000544513 MED14O60244 1454 aa21.87■■□□□ 1.09
SEMA4D-224ENST00000544513 ERVK-7P63135 1459 aa21.86■■□□□ 1.09
SEMA4D-224ENST00000544513 SHANK2Q9UPX8 1470 aa21.86■■□□□ 1.09
SEMA4D-224ENST00000544513 DEPDC5O75140 1603 aa21.86■■□□□ 1.09
SEMA4D-224ENST00000544513 ABCC5O15440 1437 aa21.86■■□□□ 1.09
SEMA4D-224ENST00000544513 CPS1P31327 1500 aa21.85■■□□□ 1.09
SEMA4D-224ENST00000544513 ILDR2Q71H61 639 aa21.83■■□□□ 1.09
SEMA4D-224ENST00000544513 KIF15Q9NS87 1388 aa21.83■■□□□ 1.08
SEMA4D-224ENST00000544513 VWDEQ8N2E2 1590 aa21.82■■□□□ 1.08
SEMA4D-224ENST00000544513 NPHP4O75161 1426 aaPredicted RBP21.82■■□□□ 1.08
SEMA4D-224ENST00000544513 PTPN23Q9H3S7 1636 aa21.82■■□□□ 1.08
SEMA4D-224ENST00000544513 CROCC2H7BZ55 1655 aa21.81■■□□□ 1.08
SEMA4D-224ENST00000544513 ERBINQ96RT1 1412 aa21.8■■□□□ 1.08
SEMA4D-224ENST00000544513 PRDM15P57071 1507 aaPredicted RBP21.8■■□□□ 1.08
SEMA4D-224ENST00000544513 CEP152O94986 1710 aa21.8■■□□□ 1.08
SEMA4D-224ENST00000544513 ARHGAP31Q2M1Z3 1444 aa21.8■■□□□ 1.08
SEMA4D-224ENST00000544513 FGD6Q6ZV73 1430 aa21.8■■□□□ 1.08
SEMA4D-224ENST00000544513 APLP2Q06481 763 aa21.79■■□□□ 1.08
SEMA4D-224ENST00000544513 DAPK1P53355 1430 aa21.79■■□□□ 1.08
SEMA4D-224ENST00000544513 RRP7BPQ9NSQ0 103 aa21.78■■□□□ 1.08
SEMA4D-224ENST00000544513 IQGAP1P46940 1657 aa21.76■■□□□ 1.07
SEMA4D-224ENST00000544513 UBR1Q8IWV7 1749 aa21.75■■□□□ 1.07
SEMA4D-224ENST00000544513 CFAP65Q6ZU64 1925 aaKnown RBP21.74■■□□□ 1.07
SEMA4D-224ENST00000544513 ARHGAP23Q9P227 1491 aa21.72■■□□□ 1.07
SEMA4D-224ENST00000544513 TOM1O60784 492 aa21.72■■□□□ 1.07
SEMA4D-224ENST00000544513 SOCS7O14512 581 aa21.71■■□□□ 1.07
SEMA4D-224ENST00000544513 SLIT1O75093 1534 aa21.7■■□□□ 1.07
SEMA4D-224ENST00000544513 ANKRD30AQ9BXX3 1397 aa21.7■■□□□ 1.06
SEMA4D-224ENST00000544513 SCAF11Q99590 1463 aaKnown RBP21.7■■□□□ 1.06
SEMA4D-224ENST00000544513 ALKQ9UM73 1620 aa21.69■■□□□ 1.06
SEMA4D-224ENST00000544513 STRCP1A6NGW2 1772 aa21.69■■□□□ 1.06
SEMA4D-224ENST00000544513 LMTK2Q8IWU2 1503 aa21.69■■□□□ 1.06
SEMA4D-224ENST00000544513 LTKP29376 864 aa21.68■■□□□ 1.06
SEMA4D-224ENST00000544513 HSPA1LP34931 641 aa21.68■■□□□ 1.06
SEMA4D-224ENST00000544513 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.68■■□□□ 1.06
SEMA4D-224ENST00000544513 LRRC7Q96NW7 1537 aa21.67■■□□□ 1.06
SEMA4D-224ENST00000544513 KANK1Q14678 1352 aa21.67■■□□□ 1.06
SEMA4D-224ENST00000544513 PIP4K2BP78356 416 aa21.67■■□□□ 1.06
SEMA4D-224ENST00000544513 CHIC2Q9UKJ5 165 aa21.66■■□□□ 1.06
SEMA4D-224ENST00000544513 ADGRL2O95490 1459 aa21.65■■□□□ 1.06
SEMA4D-224ENST00000544513 TXNDC2Q86VQ3 553 aa21.65■■□□□ 1.06
SEMA4D-224ENST00000544513 SCAF1Q9H7N4 1312 aaKnown RBP21.64■■□□□ 1.05
SEMA4D-224ENST00000544513 PIK3C2BO00750 1634 aa21.63■■□□□ 1.05
SEMA4D-224ENST00000544513 TMEM2Q9UHN6 1383 aa21.62■■□□□ 1.05
SEMA4D-224ENST00000544513 SYNMO15061 1565 aa21.62■■□□□ 1.05
SEMA4D-224ENST00000544513 KDM5AP29375 1690 aaKnown RBP21.62■■□□□ 1.05
SEMA4D-224ENST00000544513 IDI1Q13907 227 aa21.61■■□□□ 1.05
SEMA4D-224ENST00000544513 EID1Q9Y6B2 187 aa21.6■■□□□ 1.05
SEMA4D-224ENST00000544513 NOS1P29475 1434 aa21.6■■□□□ 1.05
SEMA4D-224ENST00000544513 EFCAB6Q5THR3 1501 aa21.6■■□□□ 1.05
SEMA4D-224ENST00000544513 FAM50AQ14320 339 aaKnown RBP21.55■■□□□ 1.04
SEMA4D-224ENST00000544513 ANKRD50Q9ULJ7 1429 aa21.55■■□□□ 1.04
SEMA4D-224ENST00000544513 MED1Q15648 1581 aaPredicted RBP21.54■■□□□ 1.04
SEMA4D-224ENST00000544513 STAG3Q9UJ98 1225 aa21.54■■□□□ 1.04
SEMA4D-224ENST00000544513 SLC52A1Q9NWF4 448 aa21.53■■□□□ 1.04
SEMA4D-224ENST00000544513 TET3O43151 1660 aa21.53■■□□□ 1.04
SEMA4D-224ENST00000544513 RPRD2Q5VT52 1461 aaKnown RBP21.52■■□□□ 1.04
SEMA4D-224ENST00000544513 ADGRB3O60242 1522 aa21.51■■□□□ 1.03
SEMA4D-224ENST00000544513 XIRP1Q702N8 1843 aaKnown RBP21.51■■□□□ 1.03
SEMA4D-224ENST00000544513 KCNA6P17658 529 aa21.47■■□□□ 1.03
SEMA4D-224ENST00000544513 SLC26A8Q96RN1 970 aa21.45■■□□□ 1.02
SEMA4D-224ENST00000544513 ROCK1Q13464 1354 aa21.45■■□□□ 1.02
SEMA4D-224ENST00000544513 ZFYVE9O95405 1425 aa21.45■■□□□ 1.02
SEMA4D-224ENST00000544513 TMEM94Q12767 1356 aa21.44■■□□□ 1.02
SEMA4D-224ENST00000544513 UNC13BO14795 1591 aa21.44■■□□□ 1.02
SEMA4D-224ENST00000544513 FAM135BQ49AJ0 1406 aa21.42■■□□□ 1.02
SEMA4D-224ENST00000544513 GCC2Q8IWJ2 1684 aa21.4■■□□□ 1.02
SEMA4D-224ENST00000544513 TMEM131LA2VDJ0 1609 aa21.4■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms