RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 TRIM52Q96A61 297 aa11.16□□□□□ -0.62
PDLIM5-221ENST00000542407 RBM19Q9Y4C8 960 aaKnown RBP11.16□□□□□ -0.62
PDLIM5-221ENST00000542407 ANKRD30BQ9BXX2 1392 aa11.16□□□□□ -0.62
PDLIM5-221ENST00000542407 PLEKHH2Q8IVE3 1493 aa11.16□□□□□ -0.62
PDLIM5-221ENST00000542407 PLXNC1O60486 1568 aa11.16□□□□□ -0.62
PDLIM5-221ENST00000542407 ABCA9Q8IUA7 1624 aa11.16□□□□□ -0.62
PDLIM5-221ENST00000542407 TONSLQ96HA7 1378 aa11.14□□□□□ -0.63
PDLIM5-221ENST00000542407 KIF15Q9NS87 1388 aa11.14□□□□□ -0.63
PDLIM5-221ENST00000542407 RSPH4AQ5TD94 716 aa11.13□□□□□ -0.63
PDLIM5-221ENST00000542407 KCNH8Q96L42 1107 aa11.13□□□□□ -0.63
PDLIM5-221ENST00000542407 RPRD2Q5VT52 1461 aaKnown RBP11.12□□□□□ -0.63
PDLIM5-221ENST00000542407 ASXL2Q76L83 1435 aa11.12□□□□□ -0.63
PDLIM5-221ENST00000542407 FOXD1Q16676 465 aa11.12□□□□□ -0.63
PDLIM5-221ENST00000542407 TEX14Q8IWB6 1497 aa11.11□□□□□ -0.63
PDLIM5-221ENST00000542407 TAF7LQ5H9L4 462 aa11.11□□□□□ -0.63
PDLIM5-221ENST00000542407 UNC13BO14795 1591 aa11.11□□□□□ -0.63
PDLIM5-221ENST00000542407 TSPY4P0CV99 314 aa11.11□□□□□ -0.63
PDLIM5-221ENST00000542407 TSPY10P0CW01 314 aa11.11□□□□□ -0.63
PDLIM5-221ENST00000542407 KDM2AQ9Y2K7 1162 aa11.1□□□□□ -0.63
PDLIM5-221ENST00000542407 TRAPPC8Q9Y2L5 1435 aa11.09□□□□□ -0.63
PDLIM5-221ENST00000542407 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.09□□□□□ -0.63
PDLIM5-221ENST00000542407 A0A0U1RQG5 324 aaPredicted RBP11.08□□□□□ -0.64
PDLIM5-221ENST00000542407 FOXD4L1Q9NU39 408 aa11.08□□□□□ -0.64
PDLIM5-221ENST00000542407 EFCAB2Q5VUJ9 269 aa11.08□□□□□ -0.64
PDLIM5-221ENST00000542407 MAGI2Q86UL8 1455 aa11.08□□□□□ -0.64
PDLIM5-221ENST00000542407 ZFYVE16Q7Z3T8 1539 aa11.08□□□□□ -0.64
PDLIM5-221ENST00000542407 DUOX2Q9NRD8 1548 aa11.08□□□□□ -0.64
PDLIM5-221ENST00000542407 FAM135AQ9P2D6 1515 aa11.07□□□□□ -0.64
PDLIM5-221ENST00000542407 FANCAO15360 1455 aa11.06□□□□□ -0.64
PDLIM5-221ENST00000542407 MSH5O43196 834 aa11.06□□□□□ -0.64
PDLIM5-221ENST00000542407 INO80Q9ULG1 1556 aaPredicted RBP11.06□□□□□ -0.64
PDLIM5-221ENST00000542407 NUP155O75694 1391 aa11.06□□□□□ -0.64
PDLIM5-221ENST00000542407 IQGAP3Q86VI3 1631 aa11.06□□□□□ -0.64
PDLIM5-221ENST00000542407 ERBINQ96RT1 1412 aa11.06□□□□□ -0.64
PDLIM5-221ENST00000542407 RTEL1-TNFRSF6BF6WH68 1400 aa11.05□□□□□ -0.64
PDLIM5-221ENST00000542407 PKD2Q13563 968 aa11.04□□□□□ -0.64
PDLIM5-221ENST00000542407 L3MBTL2Q969R5 705 aa11.04□□□□□ -0.64
PDLIM5-221ENST00000542407 AAMPQ13685 434 aa11.04□□□□□ -0.64
PDLIM5-221ENST00000542407 MYT1LQ9UL68 1186 aa11.04□□□□□ -0.64
PDLIM5-221ENST00000542407 NPM2Q86SE8 214 aaKnown RBP11.02□□□□□ -0.65
PDLIM5-221ENST00000542407 ADGRL1O94910 1474 aa11.02□□□□□ -0.65
PDLIM5-221ENST00000542407 ATP7AQ04656 1500 aa11.01□□□□□ -0.65
PDLIM5-221ENST00000542407 DEPDC5O75140 1603 aa11.01□□□□□ -0.65
PDLIM5-221ENST00000542407 CHMP4AQ9BY43 222 aa11.01□□□□□ -0.65
PDLIM5-221ENST00000542407 RIMBP3CA6NJZ7 1639 aa11.01□□□□□ -0.65
PDLIM5-221ENST00000542407 RIMBP3BA6NNM3 1639 aa11.01□□□□□ -0.65
PDLIM5-221ENST00000542407 RIMBP3Q9UFD9 1639 aa11.01□□□□□ -0.65
PDLIM5-221ENST00000542407 CFAP74Q9C0B2 1584 aa11□□□□□ -0.65
PDLIM5-221ENST00000542407 DHX37Q8IY37 1157 aaKnown RBP11□□□□□ -0.65
PDLIM5-221ENST00000542407 AFAP1Q8N556 730 aa10.99□□□□□ -0.65
PDLIM5-221ENST00000542407 PLA2R1Q13018 1463 aa10.99□□□□□ -0.65
PDLIM5-221ENST00000542407 SCAPERQ9BY12 1400 aa10.99□□□□□ -0.65
PDLIM5-221ENST00000542407 NBPF8Q3BBV2 869 aa10.99□□□□□ -0.65
PDLIM5-221ENST00000542407 DEKP35659 375 aaKnown RBP10.98□□□□□ -0.65
PDLIM5-221ENST00000542407 SPAG9O60271 1321 aaKnown RBP10.98□□□□□ -0.65
PDLIM5-221ENST00000542407 KDM5CP41229 1560 aa10.98□□□□□ -0.65
PDLIM5-221ENST00000542407 KIDINS220Q9ULH0 1771 aa10.98□□□□□ -0.65
PDLIM5-221ENST00000542407 VWDEQ8N2E2 1590 aa10.98□□□□□ -0.65
PDLIM5-221ENST00000542407 ZMYND15Q9H091 742 aa10.98□□□□□ -0.65
PDLIM5-221ENST00000542407 EIF2AK4Q9P2K8 1649 aaKnown RBP10.98□□□□□ -0.65
PDLIM5-221ENST00000542407 NPM1P06748 294 aaKnown RBP eCLIP10.97□□□□□ -0.65
PDLIM5-221ENST00000542407 CD109Q6YHK3 1445 aa10.97□□□□□ -0.65
PDLIM5-221ENST00000542407 ATP10AO60312 1499 aa10.97□□□□□ -0.65
PDLIM5-221ENST00000542407 HIRIP3Q9BW71 556 aaPredicted RBP10.97□□□□□ -0.65
PDLIM5-221ENST00000542407 UHRF1BP1Q6BDS2 1440 aa10.97□□□□□ -0.65
PDLIM5-221ENST00000542407 MROH1Q8NDA8 1641 aa10.97□□□□□ -0.65
PDLIM5-221ENST00000542407 MAP3K4Q9Y6R4 1608 aa10.97□□□□□ -0.65
PDLIM5-221ENST00000542407 RBM10P98175 930 aaKnown RBP10.96□□□□□ -0.65
PDLIM5-221ENST00000542407 SPATA31E1Q6ZUB1 1445 aa10.96□□□□□ -0.66
PDLIM5-221ENST00000542407 ZNF518AQ6AHZ1 1483 aa10.95□□□□□ -0.66
PDLIM5-221ENST00000542407 POGZQ7Z3K3 1410 aa10.95□□□□□ -0.66
PDLIM5-221ENST00000542407 E9PCH4 1651 aa10.95□□□□□ -0.66
PDLIM5-221ENST00000542407 PRDM15P57071 1507 aaPredicted RBP10.95□□□□□ -0.66
PDLIM5-221ENST00000542407 GLI2P10070 1586 aa10.95□□□□□ -0.66
PDLIM5-221ENST00000542407 HSPA5P11021 654 aaKnown RBP10.94□□□□□ -0.66
PDLIM5-221ENST00000542407 GLIPR1L2Q4G1C9 344 aa10.94□□□□□ -0.66
PDLIM5-221ENST00000542407 NEO1Q92859 1461 aa10.93□□□□□ -0.66
PDLIM5-221ENST00000542407 FRMPD1Q5SYB0 1578 aa10.93□□□□□ -0.66
PDLIM5-221ENST00000542407 TET3O43151 1660 aa10.93□□□□□ -0.66
PDLIM5-221ENST00000542407 DHX29Q7Z478 1369 aaKnown RBP10.92□□□□□ -0.66
PDLIM5-221ENST00000542407 BRD2P25440 801 aaKnown RBP10.92□□□□□ -0.66
PDLIM5-221ENST00000542407 RALGAPBQ86X10 1494 aa10.92□□□□□ -0.66
PDLIM5-221ENST00000542407 C14orf37Q86TY3 774 aa10.92□□□□□ -0.66
PDLIM5-221ENST00000542407 HECW2Q9P2P5 1572 aa10.92□□□□□ -0.66
PDLIM5-221ENST00000542407 MLH3Q9UHC1 1453 aa10.92□□□□□ -0.66
PDLIM5-221ENST00000542407 DDX10Q13206 875 aaKnown RBP10.92□□□□□ -0.66
PDLIM5-221ENST00000542407 RNF17Q9BXT8 1623 aaKnown RBP10.92□□□□□ -0.66
PDLIM5-221ENST00000542407 POLR1AO95602 1720 aaPredicted RBP10.91□□□□□ -0.66
PDLIM5-221ENST00000542407 BCORL1Q5H9F3 1711 aa10.91□□□□□ -0.66
PDLIM5-221ENST00000542407 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.91□□□□□ -0.662e-6■□□□□ 11
PDLIM5-221ENST00000542407 CCDC144AA2RUR9 1427 aa10.91□□□□□ -0.66
PDLIM5-221ENST00000542407 ABCA6Q8N139 1617 aa10.91□□□□□ -0.66
PDLIM5-221ENST00000542407 TRPM2O94759 1503 aa10.9□□□□□ -0.66
PDLIM5-221ENST00000542407 EIF4G2P78344 907 aaKnown RBP eCLIP10.9□□□□□ -0.66
PDLIM5-221ENST00000542407 RSPH6AQ9H0K4 717 aa10.9□□□□□ -0.66
PDLIM5-221ENST00000542407 PTPRTO14522 1441 aa10.9□□□□□ -0.66
PDLIM5-221ENST00000542407 DIP2BQ9P265 1576 aa10.9□□□□□ -0.66
PDLIM5-221ENST00000542407 RICTORQ6R327 1708 aa10.9□□□□□ -0.67
PDLIM5-221ENST00000542407 WASHC2AQ641Q2 1341 aa10.9□□□□□ -0.67
PDLIM5-221ENST00000542407 SAMD1Q6SPF0 538 aaPredicted RBP10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms