RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 SPATA31D1Q6ZQQ2 1576 aa24.63■■□□□ 1.53
RTN3-211ENST00000542238 FAM135AQ9P2D6 1515 aa24.61■■□□□ 1.53
RTN3-211ENST00000542238 UBAP1LF5GYI3 381 aa24.61■■□□□ 1.53
RTN3-211ENST00000542238 ILDR2Q71H61 639 aa24.61■■□□□ 1.53
RTN3-211ENST00000542238 KDM5DQ9BY66 1539 aa24.61■■□□□ 1.53
RTN3-211ENST00000542238 WASHC2CQ9Y4E1 1318 aa24.6■■□□□ 1.53
RTN3-211ENST00000542238 TNRQ92752 1358 aa24.59■■□□□ 1.53
RTN3-211ENST00000542238 TSPY4P0CV99 314 aa24.58■■□□□ 1.53
RTN3-211ENST00000542238 TSPY10P0CW01 314 aa24.58■■□□□ 1.53
RTN3-211ENST00000542238 POLR1AO95602 1720 aaPredicted RBP24.58■■□□□ 1.52
RTN3-211ENST00000542238 PZPP20742 1482 aa24.58■■□□□ 1.52
RTN3-211ENST00000542238 FBXO31Q5XUX0 539 aaPredicted RBP24.57■■□□□ 1.52
RTN3-211ENST00000542238 ARHGEF5Q12774 1597 aa24.57■■□□□ 1.52
RTN3-211ENST00000542238 SOCS7O14512 581 aa24.55■■□□□ 1.52
RTN3-211ENST00000542238 THEMISQ8N1K5 641 aaPredicted RBP24.5■■□□□ 1.51
RTN3-211ENST00000542238 ANKLE2Q86XL3 938 aa24.49■■□□□ 1.51
RTN3-211ENST00000542238 MIA2Q96PC5 1412 aa24.49■■□□□ 1.51
RTN3-211ENST00000542238 LRRC9Q6ZRR7 1453 aa24.49■■□□□ 1.51
RTN3-211ENST00000542238 NLRP1Q9C000 1473 aa24.49■■□□□ 1.51
RTN3-211ENST00000542238 NEURL4Q96JN8 1562 aa24.48■■□□□ 1.51
RTN3-211ENST00000542238 CPS1P31327 1500 aa24.47■■□□□ 1.51
RTN3-211ENST00000542238 VPS8Q8N3P4 1428 aa24.47■■□□□ 1.51
RTN3-211ENST00000542238 UGGT1Q9NYU2 1555 aa24.46■■□□□ 1.51
RTN3-211ENST00000542238 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.46■■□□□ 1.51
RTN3-211ENST00000542238 SHANK2Q9UPX8 1470 aa24.45■■□□□ 1.5
RTN3-211ENST00000542238 RNF17Q9BXT8 1623 aaKnown RBP24.44■■□□□ 1.5
RTN3-211ENST00000542238 MAST1Q9Y2H9 1570 aa24.44■■□□□ 1.5
RTN3-211ENST00000542238 ZC3H13Q5T200 1668 aaKnown RBP24.43■■□□□ 1.5
RTN3-211ENST00000542238 SCAF1Q9H7N4 1312 aaKnown RBP24.42■■□□□ 1.5
RTN3-211ENST00000542238 TOM1O60784 492 aa24.42■■□□□ 1.5
RTN3-211ENST00000542238 DEPDC5O75140 1603 aa24.41■■□□□ 1.5
RTN3-211ENST00000542238 EIF2AK4Q9P2K8 1649 aaKnown RBP24.41■■□□□ 1.5
RTN3-211ENST00000542238 ABCC3O15438 1527 aa24.4■■□□□ 1.5
RTN3-211ENST00000542238 NPHP4O75161 1426 aaPredicted RBP24.39■■□□□ 1.5
RTN3-211ENST00000542238 PIP4K2BP78356 416 aa24.39■■□□□ 1.49
RTN3-211ENST00000542238 MAP3K1Q13233 1512 aa24.39■■□□□ 1.49
RTN3-211ENST00000542238 MED14O60244 1454 aa24.38■■□□□ 1.49
RTN3-211ENST00000542238 LOC105371045A0A1W2PR82 267 aa24.37■■□□□ 1.49
RTN3-211ENST00000542238 VWDEQ8N2E2 1590 aa24.37■■□□□ 1.49
RTN3-211ENST00000542238 MYOM3Q5VTT5 1437 aa24.36■■□□□ 1.49
RTN3-211ENST00000542238 KANK4Q5T7N3 995 aaPredicted RBP24.36■■□□□ 1.49
RTN3-211ENST00000542238 IQGAP1P46940 1657 aa24.36■■□□□ 1.49
RTN3-211ENST00000542238 CFAP65Q6ZU64 1925 aaKnown RBP24.35■■□□□ 1.49
RTN3-211ENST00000542238 ERVK-7P63135 1459 aa24.33■■□□□ 1.49
RTN3-211ENST00000542238 CEP152O94986 1710 aa24.33■■□□□ 1.49
RTN3-211ENST00000542238 HSPA1LP34931 641 aa24.33■■□□□ 1.49
RTN3-211ENST00000542238 DUOX2Q9NRD8 1548 aa24.32■■□□□ 1.48
RTN3-211ENST00000542238 MROH1Q8NDA8 1641 aa24.32■■□□□ 1.48
RTN3-211ENST00000542238 UBR1Q8IWV7 1749 aa24.27■■□□□ 1.48
RTN3-211ENST00000542238 APLP2Q06481 763 aa24.26■■□□□ 1.47
RTN3-211ENST00000542238 KIF15Q9NS87 1388 aa24.25■■□□□ 1.47
RTN3-211ENST00000542238 CROCC2H7BZ55 1655 aa24.24■■□□□ 1.47
RTN3-211ENST00000542238 MED1Q15648 1581 aaPredicted RBP24.24■■□□□ 1.47
RTN3-211ENST00000542238 STRCP1A6NGW2 1772 aa24.24■■□□□ 1.47
RTN3-211ENST00000542238 ERBINQ96RT1 1412 aa24.23■■□□□ 1.47
RTN3-211ENST00000542238 SYNMO15061 1565 aa24.23■■□□□ 1.47
RTN3-211ENST00000542238 PTPN23Q9H3S7 1636 aa24.22■■□□□ 1.47
RTN3-211ENST00000542238 PRDM15P57071 1507 aaPredicted RBP24.22■■□□□ 1.47
RTN3-211ENST00000542238 RRP7BPQ9NSQ0 103 aa24.22■■□□□ 1.47
RTN3-211ENST00000542238 LRRC7Q96NW7 1537 aa24.21■■□□□ 1.47
RTN3-211ENST00000542238 SCAF11Q99590 1463 aaKnown RBP24.21■■□□□ 1.47
RTN3-211ENST00000542238 ARHGAP31Q2M1Z3 1444 aa24.21■■□□□ 1.47
RTN3-211ENST00000542238 ABCC5O15440 1437 aa24.2■■□□□ 1.46
RTN3-211ENST00000542238 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.19■■□□□ 1.46
RTN3-211ENST00000542238 ALKQ9UM73 1620 aa24.19■■□□□ 1.46
RTN3-211ENST00000542238 KANK1Q14678 1352 aa24.18■■□□□ 1.46
RTN3-211ENST00000542238 TXNDC2Q86VQ3 553 aa24.18■■□□□ 1.46
RTN3-211ENST00000542238 SLIT1O75093 1534 aa24.17■■□□□ 1.46
RTN3-211ENST00000542238 EID1Q9Y6B2 187 aa24.17■■□□□ 1.46
RTN3-211ENST00000542238 ARHGAP23Q9P227 1491 aa24.16■■□□□ 1.46
RTN3-211ENST00000542238 DAPK1P53355 1430 aa24.16■■□□□ 1.46
RTN3-211ENST00000542238 LTKP29376 864 aa24.15■■□□□ 1.46
RTN3-211ENST00000542238 STAG3Q9UJ98 1225 aa24.14■■□□□ 1.45
RTN3-211ENST00000542238 PHF23Q9BUL5 403 aaPredicted RBP24.13■■□□□ 1.45
RTN3-211ENST00000542238 PIK3C2BO00750 1634 aa24.13■■□□□ 1.45
RTN3-211ENST00000542238 FGD6Q6ZV73 1430 aa24.11■■□□□ 1.45
RTN3-211ENST00000542238 SENP3Q9H4L4 574 aaPredicted RBP24.11■■□□□ 1.45
RTN3-211ENST00000542238 ANKRD30AQ9BXX3 1397 aa24.11■■□□□ 1.45
RTN3-211ENST00000542238 TMEM2Q9UHN6 1383 aa24.09■■□□□ 1.45
RTN3-211ENST00000542238 CHIC2Q9UKJ5 165 aa24.09■■□□□ 1.45
RTN3-211ENST00000542238 KDM5AP29375 1690 aaKnown RBP24.08■■□□□ 1.45
RTN3-211ENST00000542238 LMTK2Q8IWU2 1503 aa24.06■■□□□ 1.44
RTN3-211ENST00000542238 XIRP1Q702N8 1843 aaKnown RBP24.06■■□□□ 1.44
RTN3-211ENST00000542238 EFCAB6Q5THR3 1501 aa24.05■■□□□ 1.44
RTN3-211ENST00000542238 IDI1Q13907 227 aa24.04■■□□□ 1.44
RTN3-211ENST00000542238 KCNA6P17658 529 aa23.97■■□□□ 1.43
RTN3-211ENST00000542238 NOS1P29475 1434 aa23.97■■□□□ 1.43
RTN3-211ENST00000542238 ADGRB3O60242 1522 aa23.96■■□□□ 1.43
RTN3-211ENST00000542238 ADGRL2O95490 1459 aa23.96■■□□□ 1.43
RTN3-211ENST00000542238 SLC26A8Q96RN1 970 aa23.96■■□□□ 1.43
RTN3-211ENST00000542238 SLC52A1Q9NWF4 448 aa23.96■■□□□ 1.43
RTN3-211ENST00000542238 TMEM94Q12767 1356 aa23.95■■□□□ 1.42
RTN3-211ENST00000542238 FAM50AQ14320 339 aaKnown RBP23.95■■□□□ 1.42
RTN3-211ENST00000542238 TET3O43151 1660 aa23.95■■□□□ 1.42
RTN3-211ENST00000542238 PROSER2Q86WR7 435 aaPredicted RBP23.94■■□□□ 1.42
RTN3-211ENST00000542238 BCANQ96GW7 911 aa23.94■■□□□ 1.42
RTN3-211ENST00000542238 FAM135BQ49AJ0 1406 aa23.93■■□□□ 1.42
RTN3-211ENST00000542238 RPRD2Q5VT52 1461 aaKnown RBP23.92■■□□□ 1.42
RTN3-211ENST00000542238 ANKRD50Q9ULJ7 1429 aa23.91■■□□□ 1.42
RTN3-211ENST00000542238 NKTRP30414 1462 aaKnown RBP23.88■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms