RNA–Protein interactions for RNA: ENST00000541342.2

SPIDR-227, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SPIDR, Length 3,311 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-227ENST00000541342 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.03■■□□□ 1.443e-6■■■□□ 15.2
SPIDR-227ENST00000541342 FKBP8Q14318 412 aa24.02■■□□□ 1.44
SPIDR-227ENST00000541342 CD109Q6YHK3 1445 aa24.02■■□□□ 1.44
SPIDR-227ENST00000541342 CYB5RLQ6IPT4 315 aa23.98■■□□□ 1.43
SPIDR-227ENST00000541342 CFAP74Q9C0B2 1584 aa23.97■■□□□ 1.43
SPIDR-227ENST00000541342 ANP32CO43423 234 aa23.97■■□□□ 1.43
SPIDR-227ENST00000541342 HSPA5P11021 654 aaKnown RBP23.96■■□□□ 1.43
SPIDR-227ENST00000541342 PLA2R1Q13018 1463 aa23.96■■□□□ 1.43
SPIDR-227ENST00000541342 KIDINS220Q9ULH0 1771 aa23.95■■□□□ 1.42
SPIDR-227ENST00000541342 DEPDC5O75140 1603 aa23.95■■□□□ 1.42
SPIDR-227ENST00000541342 ZNF518AQ6AHZ1 1483 aa23.92■■□□□ 1.42
SPIDR-227ENST00000541342 EIF4G2P78344 907 aaKnown RBP eCLIP23.91■■□□□ 1.423e-6■■■□□ 18.8
SPIDR-227ENST00000541342 KDM5CP41229 1560 aa23.89■■□□□ 1.41
SPIDR-227ENST00000541342 CCDC144AA2RUR9 1427 aa23.89■■□□□ 1.41
SPIDR-227ENST00000541342 POGZQ7Z3K3 1410 aa23.89■■□□□ 1.41
SPIDR-227ENST00000541342 UHRF1BP1Q6BDS2 1440 aa23.88■■□□□ 1.41
SPIDR-227ENST00000541342 E9PCH4 1651 aa23.88■■□□□ 1.41
SPIDR-227ENST00000541342 EIF2AK4Q9P2K8 1649 aaKnown RBP23.88■■□□□ 1.41
SPIDR-227ENST00000541342 MAP3K4Q9Y6R4 1608 aa23.87■■□□□ 1.41
SPIDR-227ENST00000541342 MYT1LQ9UL68 1186 aa23.87■■□□□ 1.41
SPIDR-227ENST00000541342 DHX29Q7Z478 1369 aaKnown RBP23.87■■□□□ 1.41
SPIDR-227ENST00000541342 SPATA31E1Q6ZUB1 1445 aa23.86■■□□□ 1.41
SPIDR-227ENST00000541342 ATP10AO60312 1499 aa23.86■■□□□ 1.41
SPIDR-227ENST00000541342 MROH1Q8NDA8 1641 aa23.85■■□□□ 1.41
SPIDR-227ENST00000541342 VWDEQ8N2E2 1590 aa23.85■■□□□ 1.41
SPIDR-227ENST00000541342 ZNF326Q5BKZ1 582 aaKnown RBP23.84■■□□□ 1.41
SPIDR-227ENST00000541342 NEO1Q92859 1461 aa23.84■■□□□ 1.41
SPIDR-227ENST00000541342 WASHC2AQ641Q2 1341 aa23.83■■□□□ 1.41
SPIDR-227ENST00000541342 PRDM15P57071 1507 aaPredicted RBP23.82■■□□□ 1.4
SPIDR-227ENST00000541342 KIF3BO15066 747 aa23.81■■□□□ 1.4
SPIDR-227ENST00000541342 GLI2P10070 1586 aa23.81■■□□□ 1.4
SPIDR-227ENST00000541342 HECW2Q9P2P5 1572 aa23.81■■□□□ 1.4
SPIDR-227ENST00000541342 TET3O43151 1660 aa23.81■■□□□ 1.4
SPIDR-227ENST00000541342 MLH3Q9UHC1 1453 aa23.81■■□□□ 1.4
SPIDR-227ENST00000541342 DCAF11Q8TEB1 546 aa23.81■■□□□ 1.4
SPIDR-227ENST00000541342 RALGAPBQ86X10 1494 aa23.8■■□□□ 1.4
SPIDR-227ENST00000541342 C11orf95C9JLR9 678 aaPredicted RBP23.79■■□□□ 1.4
SPIDR-227ENST00000541342 ANP32EQ9BTT0 268 aa23.79■■□□□ 1.4
SPIDR-227ENST00000541342 KDM2AQ9Y2K7 1162 aa23.79■■□□□ 1.4
SPIDR-227ENST00000541342 FRMPD1Q5SYB0 1578 aa23.78■■□□□ 1.4
SPIDR-227ENST00000541342 NEFLP07196 543 aa23.78■■□□□ 1.4
SPIDR-227ENST00000541342 A2MP01023 1474 aa23.78■■□□□ 1.4
SPIDR-227ENST00000541342 SPHKAPQ2M3C7 1700 aa23.77■■□□□ 1.4
SPIDR-227ENST00000541342 ABCA6Q8N139 1617 aa23.77■■□□□ 1.4
SPIDR-227ENST00000541342 POLR1AO95602 1720 aaPredicted RBP23.76■■□□□ 1.39
SPIDR-227ENST00000541342 DIP2BQ9P265 1576 aa23.76■■□□□ 1.39
SPIDR-227ENST00000541342 RICTORQ6R327 1708 aa23.75■■□□□ 1.39
SPIDR-227ENST00000541342 RAPGEF3O95398 923 aa23.75■■□□□ 1.39
SPIDR-227ENST00000541342 TRPM2O94759 1503 aa23.75■■□□□ 1.39
SPIDR-227ENST00000541342 KANK1Q14678 1352 aa23.75■■□□□ 1.39
SPIDR-227ENST00000541342 RGL3Q3MIN7 710 aa23.74■■□□□ 1.39
SPIDR-227ENST00000541342 RNF17Q9BXT8 1623 aaKnown RBP23.74■■□□□ 1.39
SPIDR-227ENST00000541342 USP47Q96K76 1375 aa23.74■■□□□ 1.39
SPIDR-227ENST00000541342 PTPRTO14522 1441 aa23.73■■□□□ 1.39
SPIDR-227ENST00000541342 PRAG1Q86YV5 1406 aa23.72■■□□□ 1.39
SPIDR-227ENST00000541342 CCDC7Q96M83 1385 aa23.72■■□□□ 1.39
SPIDR-227ENST00000541342 TRPM1Q7Z4N2 1603 aa23.72■■□□□ 1.39
SPIDR-227ENST00000541342 BCORL1Q5H9F3 1711 aa23.71■■□□□ 1.39
SPIDR-227ENST00000541342 CLTCL1P53675 1640 aa23.7■■□□□ 1.38
SPIDR-227ENST00000541342 CEP152O94986 1710 aa23.7■■□□□ 1.38
SPIDR-227ENST00000541342 RBM19Q9Y4C8 960 aaKnown RBP23.7■■□□□ 1.38
SPIDR-227ENST00000541342 PPRC1Q5VV67 1664 aaKnown RBP23.68■■□□□ 1.38
SPIDR-227ENST00000541342 FAM69CQ0P6D2 419 aa23.68■■□□□ 1.38
SPIDR-227ENST00000541342 EFCAB6Q5THR3 1501 aa23.68■■□□□ 1.38
SPIDR-227ENST00000541342 DIP2CQ9Y2E4 1556 aa23.67■■□□□ 1.38
SPIDR-227ENST00000541342 CARD11Q9BXL7 1154 aa23.67■■□□□ 1.38
SPIDR-227ENST00000541342 KIF7Q2M1P5 1343 aa23.66■■□□□ 1.38
SPIDR-227ENST00000541342 LMTK2Q8IWU2 1503 aa23.66■■□□□ 1.38
SPIDR-227ENST00000541342 TSPOAP1O95153 1857 aa23.66■■□□□ 1.38
SPIDR-227ENST00000541342 HNRNPUQ00839 825 aaKnown RBP eCLIP23.65■■□□□ 1.38
SPIDR-227ENST00000541342 CNTLNQ9NXG0 1405 aa23.64■■□□□ 1.37
SPIDR-227ENST00000541342 ROCK2O75116 1388 aaKnown RBP23.63■■□□□ 1.37
SPIDR-227ENST00000541342 CCDC184Q52MB2 194 aa23.61■■□□□ 1.37
SPIDR-227ENST00000541342 UGGT1Q9NYU2 1555 aa23.6■■□□□ 1.37
SPIDR-227ENST00000541342 YEATS2Q9ULM3 1422 aa23.6■■□□□ 1.37
SPIDR-227ENST00000541342 NBPF1Q3BBV0 1214 aa23.59■■□□□ 1.37
SPIDR-227ENST00000541342 GGT6Q6P531 493 aa23.58■■□□□ 1.37
SPIDR-227ENST00000541342 GPRASP1Q5JY77 1395 aa23.57■■□□□ 1.36
SPIDR-227ENST00000541342 LAMC1P11047 1609 aa23.57■■□□□ 1.36
SPIDR-227ENST00000541342 MADDQ8WXG6 1647 aa23.57■■□□□ 1.36
SPIDR-227ENST00000541342 KIF13AQ9H1H9 1805 aa23.56■■□□□ 1.36
SPIDR-227ENST00000541342 ST20-MTHFSA0A0A6YYL1 179 aa23.56■■□□□ 1.36
SPIDR-227ENST00000541342 ABCC3O15438 1527 aa23.55■■□□□ 1.36
SPIDR-227ENST00000541342 ZMYM4Q5VZL5 1548 aa23.55■■□□□ 1.36
SPIDR-227ENST00000541342 NEURL4Q96JN8 1562 aa23.54■■□□□ 1.36
SPIDR-227ENST00000541342 IRX6P78412 446 aaPredicted RBP23.54■■□□□ 1.36
SPIDR-227ENST00000541342 NPATQ14207 1427 aa23.54■■□□□ 1.36
SPIDR-227ENST00000541342 CFAP65Q6ZU64 1925 aaKnown RBP23.54■■□□□ 1.36
SPIDR-227ENST00000541342 KIF1BO60333 1816 aa23.53■■□□□ 1.36
SPIDR-227ENST00000541342 CAMSAP1Q5T5Y3 1602 aa23.52■■□□□ 1.36
SPIDR-227ENST00000541342 MROH2AA6NES4 1674 aa23.51■■□□□ 1.35
SPIDR-227ENST00000541342 ARID4BQ4LE39 1312 aaPredicted RBP23.49■■□□□ 1.35
SPIDR-227ENST00000541342 PRKRIP1Q9H875 184 aaPredicted RBP23.49■■□□□ 1.35
SPIDR-227ENST00000541342 WASHC2CQ9Y4E1 1318 aa23.49■■□□□ 1.35
SPIDR-227ENST00000541342 SIGLEC1Q9BZZ2 1709 aa23.48■■□□□ 1.35
SPIDR-227ENST00000541342 IFT172Q9UG01 1749 aa23.47■■□□□ 1.35
SPIDR-227ENST00000541342 MSH5O43196 834 aa23.46■■□□□ 1.35
SPIDR-227ENST00000541342 POLR3GLQ9BT43 218 aa23.46■■□□□ 1.35
SPIDR-227ENST00000541342 ZC3H13Q5T200 1668 aaKnown RBP23.44■■□□□ 1.34
SPIDR-227ENST00000541342 ADGRB3O60242 1522 aa23.44■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms