RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 TIMELESSQ9UNS1 1208 aa25.83■■□□□ 1.73
CLIP1-215ENST00000541108 FAM135AQ9P2D6 1515 aa25.83■■□□□ 1.72
CLIP1-215ENST00000541108 DEPDC5O75140 1603 aa25.82■■□□□ 1.72
CLIP1-215ENST00000541108 IQGAP3Q86VI3 1631 aa25.81■■□□□ 1.72
CLIP1-215ENST00000541108 DIP2CQ9Y2E4 1556 aa25.81■■□□□ 1.72
CLIP1-215ENST00000541108 COL17A1Q9UMD9 1497 aaPredicted RBP25.81■■□□□ 1.72
CLIP1-215ENST00000541108 KIF3BO15066 747 aa25.8■■□□□ 1.72
CLIP1-215ENST00000541108 PKD2Q13563 968 aa25.8■■□□□ 1.72
CLIP1-215ENST00000541108 SIN3AQ96ST3 1273 aa25.8■■□□□ 1.72
CLIP1-215ENST00000541108 ANKRD30BQ9BXX2 1392 aa25.79■■□□□ 1.72
CLIP1-215ENST00000541108 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.78■■□□□ 1.721e-6■□□□□ 10.5
CLIP1-215ENST00000541108 BCORL1Q5H9F3 1711 aa25.78■■□□□ 1.72
CLIP1-215ENST00000541108 YEATS2Q9ULM3 1422 aa25.76■■□□□ 1.72
CLIP1-215ENST00000541108 FOXD1Q16676 465 aa25.75■■□□□ 1.71
CLIP1-215ENST00000541108 KANK1Q14678 1352 aa25.75■■□□□ 1.71
CLIP1-215ENST00000541108 NEUROD1Q13562 356 aa25.74■■□□□ 1.71
CLIP1-215ENST00000541108 PRDM15P57071 1507 aaPredicted RBP25.74■■□□□ 1.71
CLIP1-215ENST00000541108 ATP10AO60312 1499 aa25.73■■□□□ 1.71
CLIP1-215ENST00000541108 RNF17Q9BXT8 1623 aaKnown RBP25.73■■□□□ 1.71
CLIP1-215ENST00000541108 VWDEQ8N2E2 1590 aa25.73■■□□□ 1.71
CLIP1-215ENST00000541108 REREQ9P2R6 1566 aa25.71■■□□□ 1.71
CLIP1-215ENST00000541108 MROH1Q8NDA8 1641 aa25.7■■□□□ 1.7
CLIP1-215ENST00000541108 RPRD2Q5VT52 1461 aaKnown RBP25.66■■□□□ 1.7
CLIP1-215ENST00000541108 TONSLQ96HA7 1378 aa25.64■■□□□ 1.7
CLIP1-215ENST00000541108 ARHGEF40Q8TER5 1519 aa25.64■■□□□ 1.7
CLIP1-215ENST00000541108 TET3O43151 1660 aa25.64■■□□□ 1.69
CLIP1-215ENST00000541108 AGLP35573 1532 aa25.63■■□□□ 1.69
CLIP1-215ENST00000541108 LMTK2Q8IWU2 1503 aa25.63■■□□□ 1.69
CLIP1-215ENST00000541108 GGT6Q6P531 493 aa25.61■■□□□ 1.69
CLIP1-215ENST00000541108 E9PCH4 1651 aa25.58■■□□□ 1.69
CLIP1-215ENST00000541108 PPP6R1Q9UPN7 881 aa25.57■■□□□ 1.68
CLIP1-215ENST00000541108 PPP1R15AO75807 674 aaPredicted RBP25.56■■□□□ 1.68
CLIP1-215ENST00000541108 WASHC2CQ9Y4E1 1318 aa25.56■■□□□ 1.68
CLIP1-215ENST00000541108 PLA2R1Q13018 1463 aa25.55■■□□□ 1.68
CLIP1-215ENST00000541108 EFCAB6Q5THR3 1501 aa25.55■■□□□ 1.68
CLIP1-215ENST00000541108 ZC3H13Q5T200 1668 aaKnown RBP25.53■■□□□ 1.68
CLIP1-215ENST00000541108 CCDC144AA2RUR9 1427 aa25.53■■□□□ 1.68
CLIP1-215ENST00000541108 PTPRTO14522 1441 aa25.53■■□□□ 1.68
CLIP1-215ENST00000541108 ABCC3O15438 1527 aa25.53■■□□□ 1.68
CLIP1-215ENST00000541108 CEP152O94986 1710 aa25.52■■□□□ 1.68
CLIP1-215ENST00000541108 L3MBTL2Q969R5 705 aa25.48■■□□□ 1.67
CLIP1-215ENST00000541108 SPHKAPQ2M3C7 1700 aa25.48■■□□□ 1.67
CLIP1-215ENST00000541108 TRPM2O94759 1503 aa25.48■■□□□ 1.67
CLIP1-215ENST00000541108 ARHGAP31Q2M1Z3 1444 aa25.47■■□□□ 1.67
CLIP1-215ENST00000541108 SIGLEC1Q9BZZ2 1709 aa25.46■■□□□ 1.67
CLIP1-215ENST00000541108 CAMSAP1Q5T5Y3 1602 aa25.45■■□□□ 1.66
CLIP1-215ENST00000541108 NPATQ14207 1427 aa25.44■■□□□ 1.66
CLIP1-215ENST00000541108 CNTLNQ9NXG0 1405 aa25.38■■□□□ 1.65
CLIP1-215ENST00000541108 ARID4BQ4LE39 1312 aaPredicted RBP25.37■■□□□ 1.65
CLIP1-215ENST00000541108 NOS1P29475 1434 aa25.36■■□□□ 1.65
CLIP1-215ENST00000541108 NEURL4Q96JN8 1562 aa25.35■■□□□ 1.65
CLIP1-215ENST00000541108 CLTCL1P53675 1640 aa25.34■■□□□ 1.65
CLIP1-215ENST00000541108 SPATA31E1Q6ZUB1 1445 aa25.34■■□□□ 1.65
CLIP1-215ENST00000541108 MLECQ14165 292 aa25.33■■□□□ 1.65
CLIP1-215ENST00000541108 ESF1Q9H501 851 aaKnown RBP25.32■■□□□ 1.64
CLIP1-215ENST00000541108 CLTCQ00610 1675 aaKnown RBP25.31■■□□□ 1.64
CLIP1-215ENST00000541108 CFAP65Q6ZU64 1925 aaKnown RBP25.3■■□□□ 1.64
CLIP1-215ENST00000541108 UHRF1BP1Q6BDS2 1440 aa25.29■■□□□ 1.64
CLIP1-215ENST00000541108 ZNF316A6NFI3 1004 aaPredicted RBP25.29■■□□□ 1.64
CLIP1-215ENST00000541108 STAC3Q96MF2 364 aa25.29■■□□□ 1.64
CLIP1-215ENST00000541108 DCAF11Q8TEB1 546 aa25.29■■□□□ 1.64
CLIP1-215ENST00000541108 RGL3Q3MIN7 710 aa25.28■■□□□ 1.64
CLIP1-215ENST00000541108 SLC52A1Q9NWF4 448 aa25.27■■□□□ 1.64
CLIP1-215ENST00000541108 KIF1BO60333 1816 aa25.27■■□□□ 1.64
CLIP1-215ENST00000541108 PREX1Q8TCU6 1659 aa25.26■■□□□ 1.63
CLIP1-215ENST00000541108 NBPF8Q3BBV2 869 aa25.26■■□□□ 1.63
CLIP1-215ENST00000541108 UGGT1Q9NYU2 1555 aa25.25■■□□□ 1.63
CLIP1-215ENST00000541108 PIK3C2BO00750 1634 aa25.25■■□□□ 1.63
CLIP1-215ENST00000541108 ZMYM3Q14202 1370 aa25.24■■□□□ 1.63
CLIP1-215ENST00000541108 SYNMO15061 1565 aa25.24■■□□□ 1.63
CLIP1-215ENST00000541108 ERVK-7P63135 1459 aa25.22■■□□□ 1.63
CLIP1-215ENST00000541108 KDM2AQ9Y2K7 1162 aa25.21■■□□□ 1.63
CLIP1-215ENST00000541108 MROH2AA6NES4 1674 aa25.21■■□□□ 1.63
CLIP1-215ENST00000541108 SPATA31D1Q6ZQQ2 1576 aa25.2■■□□□ 1.63
CLIP1-215ENST00000541108 FBXO31Q5XUX0 539 aaPredicted RBP25.19■■□□□ 1.62
CLIP1-215ENST00000541108 ADGRB3O60242 1522 aa25.18■■□□□ 1.62
CLIP1-215ENST00000541108 IDI1Q13907 227 aa25.17■■□□□ 1.62
CLIP1-215ENST00000541108 PRAG1Q86YV5 1406 aa25.17■■□□□ 1.62
CLIP1-215ENST00000541108 ZNF326Q5BKZ1 582 aaKnown RBP25.16■■□□□ 1.62
CLIP1-215ENST00000541108 RPGRIP1LQ68CZ1 1315 aa25.15■■□□□ 1.62
CLIP1-215ENST00000541108 RALGAPBQ86X10 1494 aa25.13■■□□□ 1.61
CLIP1-215ENST00000541108 FER1L4A9Z1Z3 1794 aa25.11■■□□□ 1.61
CLIP1-215ENST00000541108 CHGAP10645 457 aaKnown RBP25.11■■□□□ 1.61
CLIP1-215ENST00000541108 MYOM2P54296 1465 aa25.1■■□□□ 1.61
CLIP1-215ENST00000541108 EIF4G2P78344 907 aaKnown RBP eCLIP25.1■■□□□ 1.61
CLIP1-215ENST00000541108 IFT172Q9UG01 1749 aa25.09■■□□□ 1.61
CLIP1-215ENST00000541108 TRPM1Q7Z4N2 1603 aa25.08■■□□□ 1.61
CLIP1-215ENST00000541108 TMEM131LA2VDJ0 1609 aa25.07■■□□□ 1.6
CLIP1-215ENST00000541108 MADDQ8WXG6 1647 aa25.06■■□□□ 1.6
CLIP1-215ENST00000541108 TNRQ92752 1358 aa25.04■■□□□ 1.6
CLIP1-215ENST00000541108 PPLO60437 1756 aa25.04■■□□□ 1.6
CLIP1-215ENST00000541108 C3P01024 1663 aa25.04■■□□□ 1.6
CLIP1-215ENST00000541108 NRXN1Q9ULB1 1477 aa25.04■■□□□ 1.6
CLIP1-215ENST00000541108 ROCK2O75116 1388 aaKnown RBP25.04■■□□□ 1.6
CLIP1-215ENST00000541108 GPRASP1Q5JY77 1395 aa25.04■■□□□ 1.6
CLIP1-215ENST00000541108 CARD11Q9BXL7 1154 aa25.02■■□□□ 1.6
CLIP1-215ENST00000541108 ADAMTSL3P82987 1691 aa25.01■■□□□ 1.59
CLIP1-215ENST00000541108 VGFO15240 615 aaPredicted RBP25.01■■□□□ 1.59
CLIP1-215ENST00000541108 HSPA5P11021 654 aaKnown RBP25.01■■□□□ 1.59
CLIP1-215ENST00000541108 STAG3Q9UJ98 1225 aa25.01■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms