RNA–Protein interactions for RNA: ENST00000540904.1

SNHG1-215, Transcript of small nucleolar RNA host gene 1, human

TSL 5

Gene SNHG1, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-215	ENST00000540904	CROCC2	H7BZ55	1655 aa		14.13	□□□□□ -0.15
SNHG1-215	ENST00000540904	ZMYM3	Q14202	1370 aa		14.12	□□□□□ -0.15
SNHG1-215	ENST00000540904	ITGAE	P38570	1179 aa		14.12	□□□□□ -0.15
SNHG1-215	ENST00000540904	DUOX2	Q9NRD8	1548 aa		14.11	□□□□□ -0.15
SNHG1-215	ENST00000540904	WASHC2C	Q9Y4E1	1318 aa		14.11	□□□□□ -0.15
SNHG1-215	ENST00000540904	NCOA1	Q15788	1441 aa		14.1	□□□□□ -0.15
SNHG1-215	ENST00000540904	PTPRK	Q15262	1439 aa		14.09	□□□□□ -0.15
SNHG1-215	ENST00000540904	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	14.09	□□□□□ -0.15
SNHG1-215	ENST00000540904	ERBIN	Q96RT1	1412 aa		14.07	□□□□□ -0.16
SNHG1-215	ENST00000540904	ADGRL2	O95490	1459 aa		14.07	□□□□□ -0.16
SNHG1-215	ENST00000540904	LMTK3	Q96Q04	1460 aa		14.07	□□□□□ -0.16
SNHG1-215	ENST00000540904	C3	P01024	1663 aa		14.07	□□□□□ -0.16
SNHG1-215	ENST00000540904	CLTC	Q00610	1675 aa	Known RBP	14.07	□□□□□ -0.16
SNHG1-215	ENST00000540904	RRBP1	Q9P2E9	1410 aa	Known RBP	14.07	□□□□□ -0.16
SNHG1-215	ENST00000540904	KDM5D	Q9BY66	1539 aa		14.06	□□□□□ -0.16
SNHG1-215	ENST00000540904	HSPA2	P54652	639 aa		14.06	□□□□□ -0.16
SNHG1-215	ENST00000540904	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	14.06	□□□□□ -0.16
SNHG1-215	ENST00000540904	EIF2AK4	Q9P2K8	1649 aa	Known RBP	14.05	□□□□□ -0.16
SNHG1-215	ENST00000540904	MROH2A	A6NES4	1674 aa		14.04	□□□□□ -0.16
SNHG1-215	ENST00000540904	NPAT	Q14207	1427 aa		14.04	□□□□□ -0.16
SNHG1-215	ENST00000540904	UHRF1BP1	Q6BDS2	1440 aa		14.04	□□□□□ -0.16
SNHG1-215	ENST00000540904	RNF17	Q9BXT8	1623 aa	Known RBP	14.04	□□□□□ -0.16
SNHG1-215	ENST00000540904	FBXO31	Q5XUX0	539 aa	Predicted RBP	14.03	□□□□□ -0.16
SNHG1-215	ENST00000540904	ROCK1	Q13464	1354 aa		14.03	□□□□□ -0.16
SNHG1-215	ENST00000540904	ANKRD50	Q9ULJ7	1429 aa		14.03	□□□□□ -0.16
SNHG1-215	ENST00000540904	FAM135A	Q9P2D6	1515 aa		14.03	□□□□□ -0.16
SNHG1-215	ENST00000540904	MROH1	Q8NDA8	1641 aa		14.01	□□□□□ -0.17
SNHG1-215	ENST00000540904	ABCC3	O15438	1527 aa		14.01	□□□□□ -0.17
SNHG1-215	ENST00000540904	KANK1	Q14678	1352 aa		14.01	□□□□□ -0.17
SNHG1-215	ENST00000540904	PRDM15	P57071	1507 aa	Predicted RBP	14	□□□□□ -0.17
SNHG1-215	ENST00000540904	PZP	P20742	1482 aa		13.99	□□□□□ -0.17
SNHG1-215	ENST00000540904	PREX1	Q8TCU6	1659 aa		13.99	□□□□□ -0.17
SNHG1-215	ENST00000540904	TNR	Q92752	1358 aa		13.97	□□□□□ -0.17
SNHG1-215	ENST00000540904	SETD1B	Q9UPS6	1966 aa	Known RBP	13.96	□□□□□ -0.17
SNHG1-215	ENST00000540904	ZC3H13	Q5T200	1668 aa	Known RBP	13.96	□□□□□ -0.17
SNHG1-215	ENST00000540904	DEPDC5	O75140	1603 aa		13.96	□□□□□ -0.17
SNHG1-215	ENST00000540904	CEP152	O94986	1710 aa		13.94	□□□□□ -0.18
SNHG1-215	ENST00000540904	CAMSAP1	Q5T5Y3	1602 aa		13.93	□□□□□ -0.18
SNHG1-215	ENST00000540904	MYO3A	Q8NEV4	1616 aa		13.93	□□□□□ -0.18
SNHG1-215	ENST00000540904	ERVK-7	P63135	1459 aa		13.93	□□□□□ -0.18
SNHG1-215	ENST00000540904	VWDE	Q8N2E2	1590 aa		13.92	□□□□□ -0.18
SNHG1-215	ENST00000540904	ARHGAP31	Q2M1Z3	1444 aa		13.92	□□□□□ -0.18
SNHG1-215	ENST00000540904	LMTK2	Q8IWU2	1503 aa		13.92	□□□□□ -0.18
SNHG1-215	ENST00000540904	NAIP	Q13075	1403 aa		13.91	□□□□□ -0.18
SNHG1-215	ENST00000540904	A2ML1	A8K2U0	1454 aa		13.91	□□□□□ -0.18
SNHG1-215	ENST00000540904	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	13.91	□□□□□ -0.18
SNHG1-215	ENST00000540904	NUP155	O75694	1391 aa		13.9	□□□□□ -0.18
SNHG1-215	ENST00000540904	SPATA31D1	Q6ZQQ2	1576 aa		13.9	□□□□□ -0.18
SNHG1-215	ENST00000540904	NLRP1	Q9C000	1473 aa		13.89	□□□□□ -0.19
SNHG1-215	ENST00000540904	HFM1	A2PYH4	1435 aa		13.89	□□□□□ -0.19
SNHG1-215	ENST00000540904	UNC13B	O14795	1591 aa		13.88	□□□□□ -0.19
SNHG1-215	ENST00000540904	EFCAB6	Q5THR3	1501 aa		13.88	□□□□□ -0.19
SNHG1-215	ENST00000540904	NCKAP5L	Q9HCH0	1330 aa		13.88	□□□□□ -0.19
SNHG1-215	ENST00000540904	THEMIS	Q8N1K5	641 aa	Predicted RBP	13.87	□□□□□ -0.19
SNHG1-215	ENST00000540904	DMRT2	Q9Y5R5	561 aa		13.87	□□□□□ -0.19
SNHG1-215	ENST00000540904	ZNF142	P52746	1687 aa	Predicted RBP	13.87	□□□□□ -0.19
SNHG1-215	ENST00000540904	UGGT1	Q9NYU2	1555 aa		13.85	□□□□□ -0.19
SNHG1-215	ENST00000540904	TRIM52	Q96A61	297 aa		13.85	□□□□□ -0.19
SNHG1-215	ENST00000540904	RPRD2	Q5VT52	1461 aa	Known RBP	13.85	□□□□□ -0.19
SNHG1-215	ENST00000540904	PKD2	Q13563	968 aa		13.84	□□□□□ -0.19
SNHG1-215	ENST00000540904	PLA2R1	Q13018	1463 aa		13.84	□□□□□ -0.19
SNHG1-215	ENST00000540904	STRC	Q7RTU9	1775 aa		13.83	□□□□□ -0.19
SNHG1-215	ENST00000540904	IQGAP3	Q86VI3	1631 aa		13.83	□□□□□ -0.2
SNHG1-215	ENST00000540904	NOS1	P29475	1434 aa		13.83	□□□□□ -0.2
SNHG1-215	ENST00000540904	TET3	O43151	1660 aa		13.83	□□□□□ -0.2
SNHG1-215	ENST00000540904	GCC2	Q8IWJ2	1684 aa		13.83	□□□□□ -0.2
SNHG1-215	ENST00000540904	IDI1	Q13907	227 aa		13.83	□□□□□ -0.2
SNHG1-215	ENST00000540904	STAG3	Q9UJ98	1225 aa		13.83	□□□□□ -0.2
SNHG1-215	ENST00000540904	CFAP65	Q6ZU64	1925 aa	Known RBP	13.83	□□□□□ -0.2
SNHG1-215	ENST00000540904	ANKLE2	Q86XL3	938 aa		13.82	□□□□□ -0.2
SNHG1-215	ENST00000540904	PTPRT	O14522	1441 aa		13.81	□□□□□ -0.2
SNHG1-215	ENST00000540904	SLC52A1	Q9NWF4	448 aa		13.81	□□□□□ -0.2
SNHG1-215	ENST00000540904	SYNM	O15061	1565 aa		13.8	□□□□□ -0.2
SNHG1-215	ENST00000540904	SLC4A1AP	Q9BWU0	796 aa	Known RBP	13.78	□□□□□ -0.2
SNHG1-215	ENST00000540904		E9PCH4	1651 aa		13.78	□□□□□ -0.2
SNHG1-215	ENST00000540904	PIK3C2B	O00750	1634 aa		13.77	□□□□□ -0.21
SNHG1-215	ENST00000540904	SETD5	Q9C0A6	1442 aa		13.77	□□□□□ -0.21
SNHG1-215	ENST00000540904	CHGA	P10645	457 aa	Known RBP	13.76	□□□□□ -0.21
SNHG1-215	ENST00000540904	MAPK8IP2	Q13387	824 aa	Predicted RBP	13.76	□□□□□ -0.21
SNHG1-215	ENST00000540904	TXNDC2	Q86VQ3	553 aa		13.76	□□□□□ -0.21
SNHG1-215	ENST00000540904	EID1	Q9Y6B2	187 aa		13.76	□□□□□ -0.21
SNHG1-215	ENST00000540904	UBR1	Q8IWV7	1749 aa		13.76	□□□□□ -0.21
SNHG1-215	ENST00000540904	TMEM2	Q9UHN6	1383 aa		13.75	□□□□□ -0.21
SNHG1-215	ENST00000540904	LTK	P29376	864 aa		13.75	□□□□□ -0.21
SNHG1-215	ENST00000540904	NEURL4	Q96JN8	1562 aa		13.74	□□□□□ -0.21
SNHG1-215	ENST00000540904	ADGRB3	O60242	1522 aa		13.74	□□□□□ -0.21
SNHG1-215	ENST00000540904	SCAF11	Q99590	1463 aa	Known RBP	13.74	□□□□□ -0.21
SNHG1-215	ENST00000540904	NPHP4	O75161	1426 aa	Predicted RBP	13.73	□□□□□ -0.21
SNHG1-215	ENST00000540904	RAB3GAP2	Q9H2M9	1393 aa		13.73	□□□□□ -0.21
SNHG1-215	ENST00000540904	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	13.73	□□□□□ -0.21
SNHG1-215	ENST00000540904	SLIT1	O75093	1534 aa		13.73	□□□□□ -0.21
SNHG1-215	ENST00000540904	ARHGAP23	Q9P227	1491 aa		13.73	□□□□□ -0.21
SNHG1-215	ENST00000540904	MPHOSPH9	Q99550	1183 aa		13.72	□□□□□ -0.21
SNHG1-215	ENST00000540904	MED14	O60244	1454 aa		13.72	□□□□□ -0.21
SNHG1-215	ENST00000540904	ACIN1	Q9UKV3	1341 aa	Known RBP	13.71	□□□□□ -0.21
SNHG1-215	ENST00000540904	POLR1A	O95602	1720 aa	Predicted RBP	13.71	□□□□□ -0.21
SNHG1-215	ENST00000540904	CERK	Q8TCT0	537 aa		13.71	□□□□□ -0.21
SNHG1-215	ENST00000540904	KDM5A	P29375	1690 aa	Known RBP	13.69	□□□□□ -0.22
SNHG1-215	ENST00000540904	PPP1R15A	O75807	674 aa	Predicted RBP	13.69	□□□□□ -0.22
SNHG1-215	ENST00000540904	HDGF	P51858	240 aa	Known RBP	13.69	□□□□□ -0.22

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