RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 CHMP7Q8WUX9 453 aaPredicted RBP14.82□□□□□ -0.04
SYNE1-237ENST00000539504 HNRNPMP52272 730 aaKnown RBP eCLIP14.82□□□□□ -0.04
SYNE1-237ENST00000539504 DDRGK1Q96HY6 314 aa14.82□□□□□ -0.04
SYNE1-237ENST00000539504 ANO8Q9HCE9 1232 aaPredicted RBP14.82□□□□□ -0.04
SYNE1-237ENST00000539504 GPATCH8Q9UKJ3 1502 aaKnown RBP14.82□□□□□ -0.04
SYNE1-237ENST00000539504 TARBP1Q13395 1621 aaKnown RBP14.82□□□□□ -0.04
SYNE1-237ENST00000539504 KIF14Q15058 1648 aa14.82□□□□□ -0.04
SYNE1-237ENST00000539504 USP35Q9P2H5 1018 aa14.81□□□□□ -0.04
SYNE1-237ENST00000539504 ADAMTS12P58397 1594 aa14.81□□□□□ -0.04
SYNE1-237ENST00000539504 SLC4A3P48751 1232 aa14.81□□□□□ -0.04
SYNE1-237ENST00000539504 NBPF1Q3BBV0 1214 aa14.81□□□□□ -0.04
SYNE1-237ENST00000539504 KIAA0586Q9BVV6 1533 aa14.8□□□□□ -0.04
SYNE1-237ENST00000539504 UHRF1BP1Q6BDS2 1440 aa14.8□□□□□ -0.04
SYNE1-237ENST00000539504 DISP1Q96F81 1524 aa14.79□□□□□ -0.04
SYNE1-237ENST00000539504 PANK3Q9H999 370 aa14.79□□□□□ -0.04
SYNE1-237ENST00000539504 PLB1Q6P1J6 1458 aa14.79□□□□□ -0.04
SYNE1-237ENST00000539504 PBRM1Q86U86 1689 aa14.78□□□□□ -0.04
SYNE1-237ENST00000539504 RAPGEF6Q8TEU7 1601 aa14.77□□□□□ -0.04
SYNE1-237ENST00000539504 C9orf84Q5VXU9 1444 aa14.77□□□□□ -0.04
SYNE1-237ENST00000539504 KIAA0556O60303 1618 aa14.77□□□□□ -0.05
SYNE1-237ENST00000539504 ZNF608Q9ULD9 1512 aaPredicted RBP14.77□□□□□ -0.05
SYNE1-237ENST00000539504 C20orf194Q5TEA3 1177 aa14.76□□□□□ -0.05
SYNE1-237ENST00000539504 PARD3Q8TEW0 1356 aa14.75□□□□□ -0.05
SYNE1-237ENST00000539504 WDR43Q15061 677 aaKnown RBP eCLIP14.75□□□□□ -0.05
SYNE1-237ENST00000539504 ADGRL2O95490 1459 aa14.75□□□□□ -0.05
SYNE1-237ENST00000539504 RGS3P49796 1198 aa14.74□□□□□ -0.05
SYNE1-237ENST00000539504 PER1O15534 1290 aaPredicted RBP14.74□□□□□ -0.05
SYNE1-237ENST00000539504 TMF1P82094 1093 aa14.73□□□□□ -0.05
SYNE1-237ENST00000539504 CCDC144AA2RUR9 1427 aa14.73□□□□□ -0.05
SYNE1-237ENST00000539504 JPH4Q96JJ6 628 aa14.73□□□□□ -0.05
SYNE1-237ENST00000539504 ADAMTS8Q9UP79 889 aa14.73□□□□□ -0.05
SYNE1-237ENST00000539504 NFKBIBQ15653 356 aa14.72□□□□□ -0.05
SYNE1-237ENST00000539504 ARHGEF12Q9NZN5 1544 aa14.71□□□□□ -0.05
SYNE1-237ENST00000539504 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.71□□□□□ -0.05
SYNE1-237ENST00000539504 GSE1Q14687 1217 aa14.71□□□□□ -0.06
SYNE1-237ENST00000539504 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.7□□□□□ -0.06
SYNE1-237ENST00000539504 KNSTRNQ9Y448 316 aa14.7□□□□□ -0.06
SYNE1-237ENST00000539504 CARMIL2Q6F5E8 1435 aa14.7□□□□□ -0.06
SYNE1-237ENST00000539504 BRPF3Q9ULD4 1205 aa14.7□□□□□ -0.06
SYNE1-237ENST00000539504 MRC2Q9UBG0 1479 aa14.69□□□□□ -0.06
SYNE1-237ENST00000539504 ADGBQ8N7X0 1667 aa14.69□□□□□ -0.06
SYNE1-237ENST00000539504 ITSN2Q9NZM3 1697 aa14.69□□□□□ -0.06
SYNE1-237ENST00000539504 CENPQQ7L2Z9 268 aaPredicted RBP14.69□□□□□ -0.06
SYNE1-237ENST00000539504 DISP3Q9P2K9 1392 aa14.69□□□□□ -0.06
SYNE1-237ENST00000539504 GRIN2AQ12879 1464 aa14.69□□□□□ -0.06
SYNE1-237ENST00000539504 FAM161AQ3B820 660 aa14.68□□□□□ -0.06
SYNE1-237ENST00000539504 WASHC2CQ9Y4E1 1318 aa14.67□□□□□ -0.06
SYNE1-237ENST00000539504 PRAG1Q86YV5 1406 aa14.66□□□□□ -0.06
SYNE1-237ENST00000539504 IFT140Q96RY7 1462 aa14.66□□□□□ -0.06
SYNE1-237ENST00000539504 GOLGA2Q08379 1002 aa14.66□□□□□ -0.06
SYNE1-237ENST00000539504 TESK2Q96S53 571 aa14.66□□□□□ -0.06
SYNE1-237ENST00000539504 PRKCSHP14314 528 aaPredicted RBP14.65□□□□□ -0.06
SYNE1-237ENST00000539504 FRAT1Q92837 279 aaPredicted RBP14.65□□□□□ -0.06
SYNE1-237ENST00000539504 CCDC146Q8IYE0 955 aa14.64□□□□□ -0.07
SYNE1-237ENST00000539504 ERBINQ96RT1 1412 aa14.64□□□□□ -0.07
SYNE1-237ENST00000539504 PPP2R1AP30153 589 aa14.63□□□□□ -0.07
SYNE1-237ENST00000539504 MAGI1Q96QZ7 1491 aaPredicted RBP14.63□□□□□ -0.07
SYNE1-237ENST00000539504 DUSP27Q5VZP5 1158 aa14.62□□□□□ -0.07
SYNE1-237ENST00000539504 BLMP54132 1417 aaPredicted RBP14.62□□□□□ -0.07
SYNE1-237ENST00000539504 KDM2BQ8NHM5 1336 aa14.62□□□□□ -0.07
SYNE1-237ENST00000539504 CANXP27824 592 aaKnown RBP14.61□□□□□ -0.07
SYNE1-237ENST00000539504 FRAT2O75474 233 aaPredicted RBP14.61□□□□□ -0.07
SYNE1-237ENST00000539504 SHANK2Q9UPX8 1470 aa14.61□□□□□ -0.07
SYNE1-237ENST00000539504 EIF5BO60841 1220 aaKnown RBP14.6□□□□□ -0.07
SYNE1-237ENST00000539504 PLEKHH1Q9ULM0 1364 aa14.6□□□□□ -0.07
SYNE1-237ENST00000539504 COL17A1Q9UMD9 1497 aaPredicted RBP14.6□□□□□ -0.07
SYNE1-237ENST00000539504 CEP170Q5SW79 1584 aa14.6□□□□□ -0.07
SYNE1-237ENST00000539504 C8orf34Q49A92 452 aa14.6□□□□□ -0.07
SYNE1-237ENST00000539504 FAM135AQ9P2D6 1515 aa14.59□□□□□ -0.07
SYNE1-237ENST00000539504 CROCC2H7BZ55 1655 aa14.59□□□□□ -0.07
SYNE1-237ENST00000539504 ATP10BO94823 1461 aa14.58□□□□□ -0.07
SYNE1-237ENST00000539504 PTPRGP23470 1445 aa14.58□□□□□ -0.08
SYNE1-237ENST00000539504 APAF1O14727 1248 aa14.58□□□□□ -0.08
SYNE1-237ENST00000539504 RSPH4AQ5TD94 716 aa14.58□□□□□ -0.08
SYNE1-237ENST00000539504 PLEKHH2Q8IVE3 1493 aa14.58□□□□□ -0.08
SYNE1-237ENST00000539504 KDM5DQ9BY66 1539 aa14.57□□□□□ -0.08
SYNE1-237ENST00000539504 A2MP01023 1474 aa14.57□□□□□ -0.08
SYNE1-237ENST00000539504 BCAR3O75815 825 aa14.57□□□□□ -0.08
SYNE1-237ENST00000539504 ZMYM4Q5VZL5 1548 aa14.57□□□□□ -0.08
SYNE1-237ENST00000539504 GPRASP1Q5JY77 1395 aa14.56□□□□□ -0.08
SYNE1-237ENST00000539504 ABCC10Q5T3U5 1492 aa14.56□□□□□ -0.08
SYNE1-237ENST00000539504 CDCA8Q53HL2 280 aa14.56□□□□□ -0.08
SYNE1-237ENST00000539504 CCDC141Q6ZP82 1450 aa14.56□□□□□ -0.08
SYNE1-237ENST00000539504 E9PCH4 1651 aa14.56□□□□□ -0.08
SYNE1-237ENST00000539504 SLFN5Q08AF3 891 aa14.55□□□□□ -0.08
SYNE1-237ENST00000539504 INSRP06213 1382 aa14.54□□□□□ -0.08
SYNE1-237ENST00000539504 ADCY10Q96PN6 1610 aa14.53□□□□□ -0.08
SYNE1-237ENST00000539504 AMER1Q5JTC6 1135 aaPredicted RBP14.53□□□□□ -0.08
SYNE1-237ENST00000539504 CDC42BPAQ5VT25 1732 aa14.53□□□□□ -0.08
SYNE1-237ENST00000539504 SLKQ9H2G2 1235 aaPredicted RBP14.53□□□□□ -0.08
SYNE1-237ENST00000539504 NEUROD2Q15784 382 aa14.52□□□□□ -0.08
SYNE1-237ENST00000539504 SPINK5Q9NQ38 1064 aaPredicted RBP14.52□□□□□ -0.08
SYNE1-237ENST00000539504 PLA2R1Q13018 1463 aa14.52□□□□□ -0.08
SYNE1-237ENST00000539504 TRPM1Q7Z4N2 1603 aa14.52□□□□□ -0.09
SYNE1-237ENST00000539504 SYNJ2O15056 1496 aa14.52□□□□□ -0.09
SYNE1-237ENST00000539504 ARXQ96QS3 562 aa14.51□□□□□ -0.09
SYNE1-237ENST00000539504 COG6Q9Y2V7 657 aa14.51□□□□□ -0.09
SYNE1-237ENST00000539504 EIF4G3O43432 1585 aaKnown RBP14.5□□□□□ -0.09
SYNE1-237ENST00000539504 BECN1Q14457 450 aa14.5□□□□□ -0.09
SYNE1-237ENST00000539504 E9PSI1 815 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms