RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 CEP152O94986 1710 aa9.25□□□□□ -0.93
USP28-206ENST00000538224 SPHKAPQ2M3C7 1700 aa9.25□□□□□ -0.93
USP28-206ENST00000538224 CCDC144AA2RUR9 1427 aa9.25□□□□□ -0.93
USP28-206ENST00000538224 TET3O43151 1660 aa9.25□□□□□ -0.93
USP28-206ENST00000538224 ATP7AQ04656 1500 aa9.25□□□□□ -0.93
USP28-206ENST00000538224 WASHC2AQ641Q2 1341 aa9.24□□□□□ -0.93
USP28-206ENST00000538224 HIRIP3Q9BW71 556 aaPredicted RBP9.23□□□□□ -0.93
USP28-206ENST00000538224 ROCK2O75116 1388 aaKnown RBP9.23□□□□□ -0.93
USP28-206ENST00000538224 USP47Q96K76 1375 aa9.23□□□□□ -0.93
USP28-206ENST00000538224 FANCAO15360 1455 aa9.22□□□□□ -0.93
USP28-206ENST00000538224 NEURL4Q96JN8 1562 aa9.22□□□□□ -0.93
USP28-206ENST00000538224 RNF17Q9BXT8 1623 aaKnown RBP9.22□□□□□ -0.93
USP28-206ENST00000538224 E9PCH4 1651 aa9.22□□□□□ -0.93
USP28-206ENST00000538224 BCORL1Q5H9F3 1711 aa9.22□□□□□ -0.93
USP28-206ENST00000538224 TRPM2O94759 1503 aa9.21□□□□□ -0.93
USP28-206ENST00000538224 PRDM15P57071 1507 aaPredicted RBP9.21□□□□□ -0.93
USP28-206ENST00000538224 NBPF8Q3BBV2 869 aa9.21□□□□□ -0.94
USP28-206ENST00000538224 KCNH8Q96L42 1107 aa9.2□□□□□ -0.94
USP28-206ENST00000538224 ASXL2Q76L83 1435 aa9.2□□□□□ -0.94
USP28-206ENST00000538224 TRAPPC8Q9Y2L5 1435 aa9.2□□□□□ -0.94
USP28-206ENST00000538224 ADGRL1O94910 1474 aa9.2□□□□□ -0.94
USP28-206ENST00000538224 VWDEQ8N2E2 1590 aa9.2□□□□□ -0.94
USP28-206ENST00000538224 SPAG9O60271 1321 aaKnown RBP9.19□□□□□ -0.94
USP28-206ENST00000538224 PRAG1Q86YV5 1406 aa9.19□□□□□ -0.94
USP28-206ENST00000538224 KIAA1210Q9ULL0 1709 aa9.19□□□□□ -0.94
USP28-206ENST00000538224 KANK1Q14678 1352 aa9.18□□□□□ -0.94
USP28-206ENST00000538224 ZNF518AQ6AHZ1 1483 aa9.18□□□□□ -0.94
USP28-206ENST00000538224 KIF1BO60333 1816 aa9.17□□□□□ -0.94
USP28-206ENST00000538224 KIDINS220Q9ULH0 1771 aa9.17□□□□□ -0.94
USP28-206ENST00000538224 A2MP01023 1474 aa9.17□□□□□ -0.94
USP28-206ENST00000538224 GPRASP1Q5JY77 1395 aa9.17□□□□□ -0.94
USP28-206ENST00000538224 KIF7Q2M1P5 1343 aa9.17□□□□□ -0.94
USP28-206ENST00000538224 MADDQ8WXG6 1647 aa9.16□□□□□ -0.94
USP28-206ENST00000538224 HECW2Q9P2P5 1572 aa9.16□□□□□ -0.94
USP28-206ENST00000538224 PLA2R1Q13018 1463 aa9.16□□□□□ -0.94
USP28-206ENST00000538224 KTN1Q86UP2 1357 aaKnown RBP9.16□□□□□ -0.94
USP28-206ENST00000538224 STAC3Q96MF2 364 aa9.16□□□□□ -0.94
USP28-206ENST00000538224 IQGAP1P46940 1657 aa9.16□□□□□ -0.94
USP28-206ENST00000538224 MROH1Q8NDA8 1641 aa9.16□□□□□ -0.94
USP28-206ENST00000538224 NPM1P06748 294 aaKnown RBP eCLIP9.15□□□□□ -0.94
USP28-206ENST00000538224 OSCARQ8IYS5 282 aa9.15□□□□□ -0.94
USP28-206ENST00000538224 CARD11Q9BXL7 1154 aa9.15□□□□□ -0.94
USP28-206ENST00000538224 CLTCL1P53675 1640 aa9.15□□□□□ -0.94
USP28-206ENST00000538224 EFCAB6Q5THR3 1501 aa9.15□□□□□ -0.95
USP28-206ENST00000538224 LMTK2Q8IWU2 1503 aa9.15□□□□□ -0.95
USP28-206ENST00000538224 IFT172Q9UG01 1749 aa9.14□□□□□ -0.95
USP28-206ENST00000538224 ZNF326Q5BKZ1 582 aaKnown RBP9.14□□□□□ -0.95
USP28-206ENST00000538224 NEO1Q92859 1461 aa9.14□□□□□ -0.95
USP28-206ENST00000538224 PTPRTO14522 1441 aa9.14□□□□□ -0.95
USP28-206ENST00000538224 SCAPERQ9BY12 1400 aa9.14□□□□□ -0.95
USP28-206ENST00000538224 DCAF11Q8TEB1 546 aa9.13□□□□□ -0.95
USP28-206ENST00000538224 PRKRIP1Q9H875 184 aaPredicted RBP9.13□□□□□ -0.95
USP28-206ENST00000538224 ZC3H13Q5T200 1668 aaKnown RBP9.13□□□□□ -0.95
USP28-206ENST00000538224 POGZQ7Z3K3 1410 aa9.13□□□□□ -0.95
USP28-206ENST00000538224 DHX29Q7Z478 1369 aaKnown RBP9.12□□□□□ -0.95
USP28-206ENST00000538224 NEFLP07196 543 aa9.12□□□□□ -0.95
USP28-206ENST00000538224 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.12□□□□□ -0.95
USP28-206ENST00000538224 MLH3Q9UHC1 1453 aa9.12□□□□□ -0.95
USP28-206ENST00000538224 COL17A1Q9UMD9 1497 aaPredicted RBP9.12□□□□□ -0.95
USP28-206ENST00000538224 PPRC1Q5VV67 1664 aaKnown RBP9.11□□□□□ -0.95
USP28-206ENST00000538224 MAP3K4Q9Y6R4 1608 aa9.11□□□□□ -0.95
USP28-206ENST00000538224 CD109Q6YHK3 1445 aa9.11□□□□□ -0.95
USP28-206ENST00000538224 MYOM2P54296 1465 aa9.1□□□□□ -0.95
USP28-206ENST00000538224 C11orf95C9JLR9 678 aaPredicted RBP9.1□□□□□ -0.95
USP28-206ENST00000538224 SUPT16HQ9Y5B9 1047 aaKnown RBP9.1□□□□□ -0.95
USP28-206ENST00000538224 GLI2P10070 1586 aa9.1□□□□□ -0.95
USP28-206ENST00000538224 ABCA6Q8N139 1617 aa9.09□□□□□ -0.95
USP28-206ENST00000538224 RICTORQ6R327 1708 aa9.09□□□□□ -0.95
USP28-206ENST00000538224 AFAP1Q8N556 730 aa9.08□□□□□ -0.96
USP28-206ENST00000538224 KDM2AQ9Y2K7 1162 aa9.08□□□□□ -0.96
USP28-206ENST00000538224 CAMSAP1Q5T5Y3 1602 aa9.08□□□□□ -0.96
USP28-206ENST00000538224 SYNMO15061 1565 aa9.07□□□□□ -0.96
USP28-206ENST00000538224 MROH2AA6NES4 1674 aa9.07□□□□□ -0.96
USP28-206ENST00000538224 HNRNPUQ00839 825 aaKnown RBP eCLIP9.07□□□□□ -0.96
USP28-206ENST00000538224 MRS2Q9HD23 443 aa9.07□□□□□ -0.96
USP28-206ENST00000538224 EIF3AQ14152 1382 aaKnown RBP9.07□□□□□ -0.96
USP28-206ENST00000538224 FRMPD1Q5SYB0 1578 aa9.07□□□□□ -0.96
USP28-206ENST00000538224 KDM5AP29375 1690 aaKnown RBP9.07□□□□□ -0.96
USP28-206ENST00000538224 ADGRB3O60242 1522 aa9.06□□□□□ -0.96
USP28-206ENST00000538224 MYO3AQ8NEV4 1616 aa9.06□□□□□ -0.96
USP28-206ENST00000538224 ST20-MTHFSA0A0A6YYL1 179 aa9.06□□□□□ -0.96
USP28-206ENST00000538224 SENP3Q9H4L4 574 aaPredicted RBP9.06□□□□□ -0.96
USP28-206ENST00000538224 DIP2CQ9Y2E4 1556 aa9.06□□□□□ -0.96
USP28-206ENST00000538224 PPLO60437 1756 aa9.06□□□□□ -0.96
USP28-206ENST00000538224 ZBED9Q6R2W3 1325 aa9.05□□□□□ -0.96
USP28-206ENST00000538224 WASHC2CQ9Y4E1 1318 aa9.05□□□□□ -0.96
USP28-206ENST00000538224 ZMYM4Q5VZL5 1548 aa9.05□□□□□ -0.96
USP28-206ENST00000538224 SETBP1Q9Y6X0 1596 aa9.05□□□□□ -0.96
USP28-206ENST00000538224 SCAF11Q99590 1463 aaKnown RBP9.05□□□□□ -0.96
USP28-206ENST00000538224 SLC24A1O60721 1099 aa9.05□□□□□ -0.96
USP28-206ENST00000538224 RALBP1Q15311 655 aa9.05□□□□□ -0.96
USP28-206ENST00000538224 MYT1LQ9UL68 1186 aa9.05□□□□□ -0.96
USP28-206ENST00000538224 BRD4O60885 1362 aaPredicted RBP9.04□□□□□ -0.96
USP28-206ENST00000538224 KIF3BO15066 747 aa9.04□□□□□ -0.96
USP28-206ENST00000538224 RGL3Q3MIN7 710 aa9.04□□□□□ -0.96
USP28-206ENST00000538224 PIK3C2BO00750 1634 aa9.03□□□□□ -0.96
USP28-206ENST00000538224 TMF1P82094 1093 aa9.03□□□□□ -0.96
USP28-206ENST00000538224 CDCA8Q53HL2 280 aa9.03□□□□□ -0.96
USP28-206ENST00000538224 ERICH6BQ5W0A0 696 aa9.03□□□□□ -0.96
USP28-206ENST00000538224 POLR3GLQ9BT43 218 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms